Incidental Mutation 'R4560:Il21'
ID 343026
Institutional Source Beutler Lab
Gene Symbol Il21
Ensembl Gene ENSMUSG00000027718
Gene Name interleukin 21
Synonyms
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R4560 (G1)
Quality Score 225
Status Not validated
Chromosome 3
Chromosomal Location 37276908-37286785 bp(-) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) C to A at 37279633 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamic Acid to Stop codon at position 128 (E128*)
Ref Sequence ENSEMBL: ENSMUSP00000124668 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000029273] [ENSMUST00000161015]
AlphaFold Q9ES17
Predicted Effect probably null
Transcript: ENSMUST00000029273
AA Change: E128*
SMART Domains Protein: ENSMUSP00000029273
Gene: ENSMUSG00000027718
AA Change: E128*

DomainStartEndE-ValueType
Pfam:IL15 4 142 7.2e-11 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000161015
AA Change: E128*
SMART Domains Protein: ENSMUSP00000124668
Gene: ENSMUSG00000027718
AA Change: E128*

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
low complexity region 26 38 N/A INTRINSIC
PDB:3TGX|P 39 140 8e-36 PDB
Predicted Effect noncoding transcript
Transcript: ENSMUST00000196943
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.2%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the common-gamma chain family of cytokines with immunoregulatory activity. The encoded protein plays a role in both the innate and adaptive immune responses by inducing the differentiation, proliferation and activity of multiple target cells including macrophages, natural killer cells, B cells and cytotoxic T cells. Dysregulation of this gene plays a role in multiple immune-mediated diseases including lupus, psoriasis and chronic inflammatory diseases. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Dec 2011]
PHENOTYPE: Mice homozygous for disruptions in this gene develop normally and have a normal life span. One allele exhibits enhanced IgE isotype switch and IgE production after antigen immunization. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 48 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adcy4 A C 14: 56,016,407 (GRCm39) probably null Het
Atp8b1 A T 18: 64,689,950 (GRCm39) L594* probably null Het
Atp8b1 C T 18: 64,701,318 (GRCm39) V347I probably benign Het
Axin1 A G 17: 26,392,745 (GRCm39) D342G probably damaging Het
Bace2 G A 16: 97,223,180 (GRCm39) R368Q probably damaging Het
Capn10 T C 1: 92,867,084 (GRCm39) Y105H probably damaging Het
Ccdc89 T G 7: 90,076,336 (GRCm39) L182R probably damaging Het
Cdk5rap2 A G 4: 70,233,568 (GRCm39) F537S probably benign Het
Cidec A T 6: 113,405,399 (GRCm39) M118K probably damaging Het
Cog8 A T 8: 107,778,843 (GRCm39) probably null Het
Ctif A T 18: 75,652,952 (GRCm39) L435Q probably damaging Het
Dhx9 A G 1: 153,342,903 (GRCm39) V533A probably damaging Het
Drc1 T A 5: 30,520,441 (GRCm39) M594K probably benign Het
Dthd1 C T 5: 62,984,435 (GRCm39) T380I probably damaging Het
Fat2 A G 11: 55,156,777 (GRCm39) S3475P possibly damaging Het
G6pd2 G A 5: 61,967,686 (GRCm39) R487H possibly damaging Het
Hcrtr2 A G 9: 76,161,970 (GRCm39) V140A probably damaging Het
Ikbke C T 1: 131,199,857 (GRCm39) C243Y probably damaging Het
Kdm7a C T 6: 39,129,757 (GRCm39) R473Q probably damaging Het
Me3 G T 7: 89,498,938 (GRCm39) R506L probably benign Het
Mtf2 T A 5: 108,234,855 (GRCm39) probably null Het
Nbas A G 12: 13,633,528 (GRCm39) N2311S probably benign Het
Nomo1 G T 7: 45,690,904 (GRCm39) V97L probably damaging Het
Pcdhb11 G A 18: 37,556,787 (GRCm39) V706I possibly damaging Het
Pkhd1 G A 1: 20,282,082 (GRCm39) R2920C probably damaging Het
Prox2 T C 12: 85,141,817 (GRCm39) T129A probably benign Het
Rgs18 T G 1: 144,631,720 (GRCm39) I131L probably benign Het
Rnf19b G T 4: 128,965,616 (GRCm39) C57F probably damaging Het
Rpl11 T C 4: 135,778,522 (GRCm39) Y122C probably damaging Het
Sarnp A G 10: 128,682,412 (GRCm39) K5R probably damaging Het
Scg2 A T 1: 79,412,898 (GRCm39) H568Q probably damaging Het
Septin10 T C 10: 59,019,417 (GRCm39) Y150C probably damaging Het
Slco1b2 A G 6: 141,616,893 (GRCm39) T409A probably benign Het
Smco2 T A 6: 146,772,674 (GRCm39) V292D possibly damaging Het
Smok3c A G 5: 138,062,746 (GRCm39) M78V probably benign Het
Spag16 C A 1: 69,883,455 (GRCm39) F61L probably benign Het
Spata22 G A 11: 73,236,585 (GRCm39) R297H probably damaging Het
Spata31d1e A G 13: 59,889,571 (GRCm39) S750P probably damaging Het
Syt3 C A 7: 44,045,368 (GRCm39) P536Q probably benign Het
Tmem117 A T 15: 94,992,677 (GRCm39) M446L probably benign Het
Trim9 A C 12: 70,393,892 (GRCm39) Y17* probably null Het
Tsga10 A G 1: 37,846,163 (GRCm39) M321T probably benign Het
Ttc13 A G 8: 125,402,016 (GRCm39) L657P probably damaging Het
Ubxn1 C T 19: 8,851,588 (GRCm39) T207I probably benign Het
Vmn2r117 A T 17: 23,678,851 (GRCm39) V791D probably damaging Het
Vps54 C G 11: 21,262,260 (GRCm39) C785W possibly damaging Het
Zfp616 A G 11: 73,973,860 (GRCm39) D43G probably benign Het
Zfp952 A G 17: 33,222,928 (GRCm39) H469R probably benign Het
Other mutations in Il21
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0433:Il21 UTSW 3 37,286,684 (GRCm39) missense possibly damaging 0.46
R0579:Il21 UTSW 3 37,281,923 (GRCm39) missense possibly damaging 0.65
R1641:Il21 UTSW 3 37,286,681 (GRCm39) missense probably benign 0.00
R1741:Il21 UTSW 3 37,281,811 (GRCm39) missense probably benign 0.00
R1754:Il21 UTSW 3 37,279,674 (GRCm39) missense possibly damaging 0.93
R1933:Il21 UTSW 3 37,286,635 (GRCm39) missense probably benign
R4975:Il21 UTSW 3 37,286,653 (GRCm39) missense probably damaging 0.99
R4977:Il21 UTSW 3 37,286,653 (GRCm39) missense probably damaging 0.99
R4979:Il21 UTSW 3 37,286,653 (GRCm39) missense probably damaging 0.99
R5254:Il21 UTSW 3 37,281,884 (GRCm39) missense possibly damaging 0.94
R5267:Il21 UTSW 3 37,281,946 (GRCm39) missense probably benign
R5641:Il21 UTSW 3 37,281,917 (GRCm39) nonsense probably null
R7058:Il21 UTSW 3 37,286,629 (GRCm39) missense probably damaging 1.00
R7259:Il21 UTSW 3 37,281,803 (GRCm39) critical splice donor site probably null
R9039:Il21 UTSW 3 37,286,602 (GRCm39) missense probably benign
R9249:Il21 UTSW 3 37,279,677 (GRCm39) critical splice acceptor site probably null
R9603:Il21 UTSW 3 37,281,949 (GRCm39) missense possibly damaging 0.94
Predicted Primers PCR Primer
(F):5'- TCCTCAGGAATCTTCGGGTC -3'
(R):5'- CGTGGTTTCCAGAACAATTTTACAG -3'

Sequencing Primer
(F):5'- CTCAGGAATCTTCGGGTCCTATG -3'
(R):5'- CAGAATTTTCCTAATGCTTGTTACTG -3'
Posted On 2015-09-24