Incidental Mutation 'R4563:Calm5'
ID 343206
Institutional Source Beutler Lab
Gene Symbol Calm5
Ensembl Gene ENSMUSG00000099269
Gene Name calmodulin 5
Synonyms Scarf2
MMRRC Submission 041788-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.131) question?
Stock # R4563 (G1)
Quality Score 225
Status Validated
Chromosome 13
Chromosomal Location 3904173-3904761 bp(+) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) C to A at 3904402 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Stop codon at position 32 (S32*)
Ref Sequence ENSEMBL: ENSMUSP00000139342 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000183198] [ENSMUST00000184271]
AlphaFold Q6W3E0
Predicted Effect probably null
Transcript: ENSMUST00000183198
AA Change: S9*
SMART Domains Protein: ENSMUSP00000139172
Gene: ENSMUSG00000099269
AA Change: S9*

DomainStartEndE-ValueType
EFh 12 40 1.9e-7 SMART
EFh 45 73 6.7e-10 SMART
EFh 81 109 1.5e-2 SMART
Predicted Effect probably null
Transcript: ENSMUST00000184271
AA Change: S32*
SMART Domains Protein: ENSMUSP00000139342
Gene: ENSMUSG00000099269
AA Change: S32*

DomainStartEndE-ValueType
EFh 35 63 3.7e-5 SMART
EFh 68 96 1.35e-7 SMART
EFh 104 132 3.12e0 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000202762
AA Change: H77N
Meta Mutation Damage Score 0.9638 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.1%
  • 20x: 94.8%
Validation Efficiency 100% (40/40)
Allele List at MGI
Other mutations in this stock
Total: 36 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam17 A G 12: 21,382,089 (GRCm39) C591R probably damaging Het
Bace2 G A 16: 97,223,180 (GRCm39) R368Q probably damaging Het
Ccdc198 T A 14: 49,471,955 (GRCm39) M152L probably benign Het
Cln3 G T 7: 126,171,730 (GRCm39) S346R probably damaging Het
G6pd2 G A 5: 61,967,686 (GRCm39) R487H possibly damaging Het
Glipr2 A T 4: 43,977,600 (GRCm39) N77Y probably damaging Het
Huwe1 A T X: 150,646,955 (GRCm39) I682F probably damaging Het
Kbtbd2 A G 6: 56,766,264 (GRCm39) V37A probably benign Het
Kdm7a C T 6: 39,129,757 (GRCm39) R473Q probably damaging Het
Lrrc71 T A 3: 87,652,715 (GRCm39) probably benign Het
Mcm3 G T 1: 20,879,869 (GRCm39) R543S probably benign Het
Mgat4a T C 1: 37,505,660 (GRCm39) D43G probably damaging Het
Mphosph8 T C 14: 56,928,457 (GRCm39) Y703H probably benign Het
Ncf2 T C 1: 152,683,976 (GRCm39) probably benign Het
Nek6 T G 2: 38,475,305 (GRCm39) V282G probably damaging Het
Nhlrc1 T C 13: 47,167,666 (GRCm39) D197G possibly damaging Het
Nup93 G T 8: 95,034,520 (GRCm39) V612F probably damaging Het
Or5be3 C T 2: 86,864,028 (GRCm39) C179Y probably damaging Het
Or9i14 A G 19: 13,792,646 (GRCm39) F103L probably benign Het
Pafah1b2 T C 9: 45,887,404 (GRCm39) K36E probably damaging Het
Paqr9 A G 9: 95,442,997 (GRCm39) E329G probably benign Het
Pclo A G 5: 14,571,383 (GRCm39) Q256R probably damaging Het
Pctp A T 11: 89,879,578 (GRCm39) D94E probably benign Het
Pde8a T A 7: 80,958,568 (GRCm39) Y315* probably null Het
Pex14 A T 4: 149,126,225 (GRCm39) V41D probably damaging Het
Ptgir A G 7: 16,640,794 (GRCm39) M29V possibly damaging Het
Rasal2 T C 1: 157,003,561 (GRCm39) K366R probably damaging Het
Rprd1a A C 18: 24,640,160 (GRCm39) probably null Het
Senp8 A C 9: 59,657,546 (GRCm39) M1R probably null Het
Slc49a4 T C 16: 35,518,312 (GRCm39) Y467C probably damaging Het
Slco1b2 A G 6: 141,616,893 (GRCm39) T409A probably benign Het
Strc T C 2: 121,196,286 (GRCm39) T1581A probably benign Het
Tmem117 T C 15: 94,536,035 (GRCm39) I23T possibly damaging Het
Ttc13 A G 8: 125,402,016 (GRCm39) L657P probably damaging Het
Ube4b A G 4: 149,443,622 (GRCm39) probably benign Het
Vmn1r125 A G 7: 21,006,308 (GRCm39) T69A probably damaging Het
Other mutations in Calm5
AlleleSourceChrCoordTypePredicted EffectPPH Score
R3732:Calm5 UTSW 13 3,904,337 (GRCm39) missense probably damaging 1.00
R3940:Calm5 UTSW 13 3,904,485 (GRCm39) missense possibly damaging 0.87
R4793:Calm5 UTSW 13 3,904,401 (GRCm39) missense probably benign 0.06
R5585:Calm5 UTSW 13 3,904,372 (GRCm39) missense possibly damaging 0.71
R5775:Calm5 UTSW 13 3,904,435 (GRCm39) missense probably damaging 0.99
R5869:Calm5 UTSW 13 3,904,321 (GRCm39) splice site probably benign
R6125:Calm5 UTSW 13 3,904,491 (GRCm39) nonsense probably null
R7621:Calm5 UTSW 13 3,904,629 (GRCm39) missense possibly damaging 0.75
R8062:Calm5 UTSW 13 3,904,405 (GRCm39) missense probably benign 0.01
R8690:Calm5 UTSW 13 3,904,277 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TTGAGCACTGGACCAGAAAC -3'
(R):5'- ACAAGCCTTCTTTGAGCTCATC -3'

Sequencing Primer
(F):5'- CTGGACCAGAAACCGCAGG -3'
(R):5'- TGAGCTCATCCACAGTGATG -3'
Posted On 2015-09-24