Mutagenetix > Incidental Mutation

Incidental Mutation 'R4585:Tenm1'

344062

Institutional Source

Beutler Lab

Gene Symbol

Tenm1

Ensembl Gene

ENSMUSG00000016150

Gene Name

teneurin transmembrane protein 1

Synonyms

Odz1, teneurin-1, TCAP-1, Ten-m1

MMRRC Submission

041806-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.349) question?

Stock #

R4585 (G1)

Quality Score

222

Status

Not validated

Chromosome

Chromosomal Location

41616743-42518003 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to A at 41626856 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Stop codon at position 1931 (Q1931*)

Ref Sequence

ENSEMBL: ENSMUSP00000110711 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000016294] [ENSMUST00000115058] [ENSMUST00000115059]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000016294
AA Change: Q1931*

SMART Domains

Protein: ENSMUSP00000016294
Gene: ENSMUSG00000016150
AA Change: Q1931*

Domain	Start	End	E-Value	Type
Pfam:Ten_N	12	177	5.1e-30	PFAM
Pfam:Ten_N	168	317	1.5e-45	PFAM
transmembrane domain	318	340	N/A	INTRINSIC
EGF	530	558	8.8e-3	SMART
EGF_like	561	589	2.5e-1	SMART
EGF	594	623	1.2e-2	SMART
EGF	626	655	4.5e-3	SMART
EGF	660	690	1.1e-1	SMART
EGF	693	721	6e-2	SMART
EGF	724	752	1.5e-2	SMART
EGF	763	795	1.6e-2	SMART
low complexity region	801	816	N/A	INTRINSIC
Pfam:Tox-GHH	2647	2724	5e-29	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000115058
AA Change: Q1924*

SMART Domains

Protein: ENSMUSP00000110710
Gene: ENSMUSG00000016150
AA Change: Q1924*

Domain	Start	End	E-Value	Type
Pfam:Ten_N	11	170	5.4e-36	PFAM
Pfam:Ten_N	159	317	7.4e-46	PFAM
transmembrane domain	318	340	N/A	INTRINSIC
EGF	530	558	1.73e0	SMART
EGF_like	561	589	5.13e1	SMART
EGF	594	623	2.45e0	SMART
EGF	626	655	9.27e-1	SMART
EGF	660	690	2.29e1	SMART
EGF	693	721	1.2e1	SMART
EGF	724	752	3.01e0	SMART
EGF	763	795	3.23e0	SMART
low complexity region	801	816	N/A	INTRINSIC
Pfam:Tox-GHH	2639	2717	1.1e-33	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000115059
AA Change: Q1931*

SMART Domains

Protein: ENSMUSP00000110711
Gene: ENSMUSG00000016150
AA Change: Q1931*

Domain	Start	End	E-Value	Type
Pfam:Ten_N	11	170	1.2e-32	PFAM
Pfam:Ten_N	159	317	1.6e-42	PFAM
transmembrane domain	318	340	N/A	INTRINSIC
EGF	530	558	8.6e-3	SMART
EGF_like	561	589	2.5e-1	SMART
EGF	594	623	1.2e-2	SMART
EGF	626	655	4.4e-3	SMART
EGF	660	690	1.1e-1	SMART
EGF	693	721	5.8e-2	SMART
EGF	724	752	1.5e-2	SMART
EGF	763	795	1.6e-2	SMART
low complexity region	801	816	N/A	INTRINSIC
Pfam:Tox-GHH	2646	2724	2.3e-30	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.1%
20x: 94.8%

Validation Efficiency

99% (90/91)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the tenascin family and teneurin subfamily. It is expressed in the neurons and may function as a cellular signal transducer. Several alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2009]

Allele List at MGI

Other mutations in this stock

Total: 84 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Akap9	T	C	5: 4,026,151 (GRCm39)	S1269P	probably benign	Het
Akr7a5	G	T	4: 139,038,238 (GRCm39)	R58L	probably benign	Het
Art2a	A	T	7: 101,203,956 (GRCm39)	L194*	probably null	Het
Aurkaip1	C	A	4: 155,917,091 (GRCm39)	A113D	possibly damaging	Het
Bsn	T	C	9: 107,987,662 (GRCm39)		probably benign	Het
Ccdc175	T	G	12: 72,221,953 (GRCm39)	D123A	possibly damaging	Het
Ccdc7b	A	G	8: 129,837,401 (GRCm39)	T131A	probably benign	Het
Ccnt2	T	C	1: 127,730,766 (GRCm39)	S548P	probably damaging	Het
Cep126	T	C	9: 8,103,338 (GRCm39)	Q224R	probably damaging	Het
Cic	A	T	7: 24,972,203 (GRCm39)	I645L	probably benign	Het
Cngb1	C	T	8: 96,023,756 (GRCm39)		probably null	Het
Col13a1	T	C	10: 61,723,024 (GRCm39)		probably null	Het
Corin	A	T	5: 72,487,042 (GRCm39)	V706D	probably damaging	Het
Crebrf	A	G	17: 26,981,229 (GRCm39)	K535R	probably damaging	Het
Cuzd1	G	A	7: 130,916,529 (GRCm39)	P310L	probably damaging	Het
Cxcr5	T	A	9: 44,425,442 (GRCm39)	I72F	probably benign	Het
Dapp1	T	C	3: 137,644,932 (GRCm39)	Q148R	probably benign	Het
Dcaf17	T	A	2: 70,918,924 (GRCm39)	S499R	probably benign	Het
Defb3	A	T	8: 19,345,172 (GRCm39)	I43F	possibly damaging	Het
Dlgap2	G	A	8: 14,777,999 (GRCm39)		probably null	Het
Dnah8	A	G	17: 30,970,541 (GRCm39)	D2684G	probably benign	Het
Dnajc10	T	G	2: 80,178,122 (GRCm39)	F710V	probably damaging	Het
Ep400	G	A	5: 110,901,725 (GRCm39)	T464I	probably damaging	Het
Epc1	G	A	18: 6,441,157 (GRCm39)	Q14*	probably null	Het
Eral1	A	T	11: 77,969,130 (GRCm39)	N123K	probably damaging	Het
Ercc5	G	A	1: 44,198,017 (GRCm39)	V145I	probably benign	Het
Evc	A	G	5: 37,481,057 (GRCm39)	S263P	probably damaging	Het
Fancc	A	T	13: 63,495,378 (GRCm39)	M182K	probably benign	Het
Fbxl3	G	T	14: 103,320,526 (GRCm39)	A355E	probably damaging	Het
Glra3	C	A	8: 56,542,028 (GRCm39)	T257K	probably damaging	Het
Gm12789	A	G	4: 101,847,159 (GRCm39)	Y148C	possibly damaging	Het
Gm14393	C	A	2: 174,904,497 (GRCm39)		probably benign	Het
Gm19965	T	A	1: 116,749,508 (GRCm39)	N396K	probably benign	Het
Gm27013	A	T	6: 130,498,003 (GRCm39)		noncoding transcript	Het
Gmcl1	A	G	6: 86,699,605 (GRCm39)	S141P	probably damaging	Het
Gsdmd	T	A	15: 75,737,600 (GRCm39)		probably null	Het
Gtf2a1	C	T	12: 91,529,700 (GRCm39)	V338I	possibly damaging	Het
H2ac15	T	C	13: 21,937,882 (GRCm39)	N39S	possibly damaging	Het
Hap1	G	A	11: 100,245,550 (GRCm39)	T138M	probably benign	Het
Ints2	G	T	11: 86,140,101 (GRCm39)	R244S	probably damaging	Het
Itgb4	T	C	11: 115,884,151 (GRCm39)	V945A	probably damaging	Het
Itih2	C	T	2: 10,115,211 (GRCm39)	S387N	probably benign	Het
Klra2	T	A	6: 131,207,120 (GRCm39)	D163V	probably benign	Het
Lctl	T	C	9: 64,038,882 (GRCm39)	S324P	probably damaging	Het
Lrrc24	C	A	15: 76,607,889 (GRCm39)	R43L	probably damaging	Het
Mogs	G	T	6: 83,095,619 (GRCm39)	R812L	possibly damaging	Het
Mroh5	T	A	15: 73,661,120 (GRCm39)	T467S	probably benign	Het
Mtap	G	A	4: 89,090,511 (GRCm39)	V194I	probably benign	Het
Myoz1	A	G	14: 20,700,663 (GRCm39)	W185R	probably damaging	Het
Nufip2	T	C	11: 77,632,554 (GRCm39)	V690A	unknown	Het
Obox1	A	T	7: 15,290,152 (GRCm39)	N165I	possibly damaging	Het
Or1j1	C	T	2: 36,702,537 (GRCm39)	C189Y	probably damaging	Het
Or4b1d	T	A	2: 89,968,558 (GRCm39)	E308D	probably benign	Het
Or4c113	T	G	2: 88,885,498 (GRCm39)	I91L	possibly damaging	Het
Or6c35	A	G	10: 129,169,142 (GRCm39)	T131A	probably benign	Het
Pabpc6	A	G	17: 9,888,002 (GRCm39)	L183P	probably damaging	Het
Pcdh15	C	T	10: 74,460,116 (GRCm39)	R1355W	probably damaging	Het
Pcdhgb8	C	A	18: 37,895,413 (GRCm39)	A161E	probably benign	Het
Pex1	A	G	5: 3,683,885 (GRCm39)	Y1127C	probably damaging	Het
Phc2	A	T	4: 128,637,303 (GRCm39)	H563L	probably damaging	Het
Plekha2	C	A	8: 25,533,685 (GRCm39)	E291*	probably null	Het
Qser1	C	A	2: 104,617,138 (GRCm39)	V1225L	probably benign	Het
Ralgapa2	A	T	2: 146,156,944 (GRCm39)	D1882E	probably damaging	Het
Rgs17	T	C	10: 5,792,596 (GRCm39)	D70G	probably benign	Het
Runx1t1	A	T	4: 13,889,864 (GRCm39)	T598S	unknown	Het
Scn2a	T	A	2: 65,573,395 (GRCm39)		probably null	Het
Serpinb10	T	A	1: 107,474,779 (GRCm39)	C314S	probably benign	Het
Setbp1	A	C	18: 79,130,164 (GRCm39)	S23A	probably benign	Het
Sh3pxd2b	A	G	11: 32,346,479 (GRCm39)	D116G	possibly damaging	Het
Slc4a1	G	T	11: 102,252,245 (GRCm39)		probably benign	Het
Snx19	T	C	9: 30,351,491 (GRCm39)	L155P	probably damaging	Het
Sox2	A	G	3: 34,705,193 (GRCm39)	N210S	probably benign	Het
Spag6	T	C	2: 18,736,958 (GRCm39)		probably null	Het
Speer4b	A	T	5: 27,703,036 (GRCm39)	L154Q	probably null	Het
Strn3	T	A	12: 51,696,953 (GRCm39)	E259D	probably benign	Het
Trp53bp1	C	G	2: 121,038,432 (GRCm39)	G1469R	probably damaging	Het
Ttc8	C	A	12: 98,948,789 (GRCm39)	Q492K	probably benign	Het
Ttn	T	C	2: 76,798,747 (GRCm39)	H509R	probably benign	Het
Utrn	T	A	10: 12,564,050 (GRCm39)	H1270L	probably benign	Het
Vopp1	G	A	6: 57,731,533 (GRCm39)	P153S	probably damaging	Het
Wdfy4	T	A	14: 32,809,912 (GRCm39)	I1770F	possibly damaging	Het
Zfp14	G	T	7: 29,738,341 (GRCm39)	Q215K	probably damaging	Het
Zfp473	A	T	7: 44,382,376 (GRCm39)	Y651*	probably null	Het
Zfp735	G	T	11: 73,580,550 (GRCm39)	E16D	possibly damaging	Het

Other mutations in Tenm1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00594:Tenm1	APN	X	41,803,913 (GRCm39)	missense	probably benign	0.04
R0481:Tenm1	UTSW	X	41,625,058 (GRCm39)	missense	probably damaging	1.00
R1959:Tenm1	UTSW	X	41,916,078 (GRCm39)	missense	probably benign	0.06
R1960:Tenm1	UTSW	X	41,916,078 (GRCm39)	missense	probably benign	0.06
R3734:Tenm1	UTSW	X	41,772,944 (GRCm39)	missense	probably benign	0.32
R5704:Tenm1	UTSW	X	42,163,572 (GRCm39)	missense	possibly damaging	0.58
R5706:Tenm1	UTSW	X	42,163,572 (GRCm39)	missense	possibly damaging	0.58
R6112:Tenm1	UTSW	X	41,916,072 (GRCm39)	missense	probably damaging	1.00
R6113:Tenm1	UTSW	X	41,916,072 (GRCm39)	missense	probably damaging	1.00
X0067:Tenm1	UTSW	X	41,625,739 (GRCm39)	missense	probably damaging	1.00
Z1088:Tenm1	UTSW	X	41,988,712 (GRCm39)	missense	probably damaging	1.00
Z1176:Tenm1	UTSW	X	41,905,681 (GRCm39)	nonsense	probably null
Z1176:Tenm1	UTSW	X	41,905,680 (GRCm39)	missense	probably damaging	0.96
Z1177:Tenm1	UTSW	X	41,914,425 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCTCAGACAGTCTTGCTTGC -3'
(R):5'- CTTTGCCTGCCCAAGATTATTTAG -3'

Sequencing Primer
(F):5'- CAGACAGTCTTGCTTGCTTTGTGTAC -3'
(R):5'- GTCCCTGGCACATAGTAATTGCTAG -3'

Posted On

2015-09-24