Mutagenetix > Incidental Mutation

Incidental Mutation 'R4601:Mtcl2'

345603

Institutional Source

Beutler Lab

Gene Symbol

Mtcl2

Ensembl Gene

ENSMUSG00000055485

Gene Name

microtubule crosslinking factor 2

Synonyms

9830001H06Rik, D430036N24Rik, Soga1

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.388) question?

Stock #

R4601 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

156857719-156921174 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 156881844 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Arginine at position 736 (K736R)

Ref Sequence

ENSEMBL: ENSMUSP00000066556 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000069098]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000069098
AA Change: K736R

PolyPhen 2 Score 0.410 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000066556
Gene: ENSMUSG00000055485
AA Change: K736R

Domain	Start	End	E-Value	Type
low complexity region	15	23	N/A	INTRINSIC
low complexity region	51	66	N/A	INTRINSIC
low complexity region	97	112	N/A	INTRINSIC
low complexity region	132	148	N/A	INTRINSIC
low complexity region	155	174	N/A	INTRINSIC
Blast:BRLZ	212	246	4e-8	BLAST
SCOP:d1fxkc_	216	350	1e-3	SMART
Pfam:DUF3166	378	472	2.3e-31	PFAM
Pfam:DUF3166	504	593	5.3e-31	PFAM
low complexity region	637	649	N/A	INTRINSIC
coiled coil region	807	867	N/A	INTRINSIC
low complexity region	872	884	N/A	INTRINSIC
low complexity region	938	950	N/A	INTRINSIC
Pfam:DUF4482	1065	1205	3.9e-28	PFAM
low complexity region	1311	1321	N/A	INTRINSIC
low complexity region	1363	1377	N/A	INTRINSIC
low complexity region	1389	1418	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133571

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.1%
20x: 94.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 91 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aars2	T	A	17: 45,827,847 (GRCm39)	D555E	probably damaging	Het
Abca16	T	G	7: 120,035,920 (GRCm39)	F334L	probably damaging	Het
Abcc4	T	A	14: 118,869,575 (GRCm39)	M186L	probably benign	Het
Agap3	T	C	5: 24,681,406 (GRCm39)	L120P	probably damaging	Het
Ak7	G	A	12: 105,679,834 (GRCm39)	V123M	probably benign	Het
Aldh1a7	A	T	19: 20,693,343 (GRCm39)	V192D	probably damaging	Het
Ankrd36	A	G	11: 5,520,102 (GRCm39)	D59G	probably benign	Het
Arsi	G	A	18: 61,049,723 (GRCm39)	G202E	probably benign	Het
Cacna1e	A	G	1: 154,347,359 (GRCm39)	V936A	probably benign	Het
Camkv	T	C	9: 107,823,295 (GRCm39)	V107A	probably damaging	Het
Camp	T	C	9: 109,677,730 (GRCm39)	E80G	probably damaging	Het
Cblif	A	C	19: 11,729,554 (GRCm39)	D171A	probably damaging	Het
Ccdc66	T	C	14: 27,222,377 (GRCm39)	N122S	probably damaging	Het
Cd101	G	A	3: 100,901,204 (GRCm39)	T960M	possibly damaging	Het
Cdk18	A	G	1: 132,044,657 (GRCm39)	V323A	possibly damaging	Het
Celf2	G	T	2: 6,590,831 (GRCm39)	N279K	possibly damaging	Het
Cemip	T	C	7: 83,600,826 (GRCm39)	I932V	probably damaging	Het
Cep250	C	A	2: 155,803,973 (GRCm39)	Q28K	probably benign	Het
Ces2f	T	C	8: 105,676,596 (GRCm39)	C97R	probably damaging	Het
Cfap126	G	T	1: 170,941,627 (GRCm39)	G41C	possibly damaging	Het
Cfap96	A	T	8: 46,423,505 (GRCm39)	I69N	probably damaging	Het
Chat	T	C	14: 32,146,112 (GRCm39)	M354V	probably benign	Het
Clca4b	A	T	3: 144,632,945 (GRCm39)	D168E	possibly damaging	Het
Cpxm1	T	A	2: 130,235,496 (GRCm39)	M499L	possibly damaging	Het
Dennd3	T	A	15: 73,439,009 (GRCm39)	W1126R	probably damaging	Het
Dgkb	T	C	12: 38,652,819 (GRCm39)	S735P	probably damaging	Het
Dlec1	T	C	9: 118,976,202 (GRCm39)		probably null	Het
Dnajc6	T	C	4: 101,468,461 (GRCm39)	F166L	probably damaging	Het
Dph5	A	G	3: 115,693,426 (GRCm39)	N115D	possibly damaging	Het
Ercc3	G	A	18: 32,378,624 (GRCm39)	A202T	probably benign	Het
Erich3	A	T	3: 154,470,375 (GRCm39)	D136V	unknown	Het
Exoc2	T	C	13: 31,066,251 (GRCm39)	N475S	probably benign	Het
Fam217a	T	C	13: 35,095,285 (GRCm39)	D310G	probably damaging	Het
Fam53a	C	T	5: 33,758,007 (GRCm39)	S372N	probably benign	Het
Fbn2	C	G	18: 58,186,805 (GRCm39)	G1699R	probably damaging	Het
Fbxo46	T	C	7: 18,869,489 (GRCm39)	V36A	probably benign	Het
Fhip1a	T	C	3: 85,648,487 (GRCm39)	M26V	probably damaging	Het
G6pc1	A	G	11: 101,263,567 (GRCm39)	Y127C	probably damaging	Het
Gba2	A	G	4: 43,573,810 (GRCm39)	F161L	probably damaging	Het
Gja1	T	C	10: 56,264,325 (GRCm39)	L228P	probably damaging	Het
Gm20834	A	G	Y: 10,323,178 (GRCm39)	V86A	probably benign	Het
Hmcn1	A	T	1: 150,614,396 (GRCm39)	C1337S	probably damaging	Het
Il1rl1	T	A	1: 40,480,460 (GRCm39)	S30T	possibly damaging	Het
Itgb4	A	G	11: 115,896,548 (GRCm39)	T1436A	probably damaging	Het
Itk	T	A	11: 46,227,342 (GRCm39)	Q427L	probably benign	Het
Klhdc4	T	C	8: 122,526,266 (GRCm39)	E291G	probably damaging	Het
Map4	T	A	9: 109,881,887 (GRCm39)	S250R	possibly damaging	Het
Mnt	T	A	11: 74,727,285 (GRCm39)	V57E	possibly damaging	Het
Mrc2	G	A	11: 105,239,257 (GRCm39)		probably null	Het
Mslnl	G	A	17: 25,961,908 (GRCm39)	V128M	probably damaging	Het
Musk	A	T	4: 58,301,625 (GRCm39)	I128F	probably damaging	Het
Myh4	G	A	11: 67,141,136 (GRCm39)	A733T	possibly damaging	Het
Myo5a	T	A	9: 75,043,670 (GRCm39)	F220I	probably damaging	Het
Npas3	A	G	12: 54,091,361 (GRCm39)	H305R	probably damaging	Het
Nrcam	A	T	12: 44,637,839 (GRCm39)	Y1132F	probably damaging	Het
Nt5c3b	A	C	11: 100,323,744 (GRCm39)	D189E	probably benign	Het
Nuf2	A	G	1: 169,333,683 (GRCm39)	L331P	probably damaging	Het
Nup214	C	T	2: 31,887,977 (GRCm39)	T646I	probably benign	Het
Or14j9	T	C	17: 37,875,076 (GRCm39)	N42S	probably damaging	Het
Pcdh18	T	C	3: 49,699,174 (GRCm39)	E1096G	probably damaging	Het
Pgm2	T	A	5: 64,265,070 (GRCm39)	F364I	probably benign	Het
Pikfyve	A	G	1: 65,273,421 (GRCm39)	N612S	probably damaging	Het
Pla2g4e	T	G	2: 120,016,863 (GRCm39)	H226P	possibly damaging	Het
Ppp3cb	T	C	14: 20,570,714 (GRCm39)	N339S	possibly damaging	Het
Prkd2	G	T	7: 16,577,573 (GRCm39)		probably benign	Het
Rnf133	T	C	6: 23,649,041 (GRCm39)	E296G	possibly damaging	Het
Sav1	A	T	12: 70,031,095 (GRCm39)	D142E	probably benign	Het
Scn3b	C	A	9: 40,199,719 (GRCm39)	P212T	probably damaging	Het
Sel1l	A	T	12: 91,799,827 (GRCm39)		probably null	Het
Septin9	A	G	11: 117,251,310 (GRCm39)	K543E	probably damaging	Het
Serpinb12	T	A	1: 106,876,883 (GRCm39)	D66E	probably benign	Het
Slc35e2	T	C	4: 155,702,106 (GRCm39)	F290S	probably benign	Het
Snrpa	A	G	7: 26,894,958 (GRCm39)	M1T	probably null	Het
Sptlc3	G	A	2: 139,478,600 (GRCm39)	V520I	probably benign	Het
Srpk3	A	G	X: 72,818,547 (GRCm39)	H79R	possibly damaging	Het
Stox2	A	G	8: 47,645,970 (GRCm39)	S497P	probably damaging	Het
Stradb	G	A	1: 59,032,731 (GRCm39)	S361N	probably damaging	Het
Sult3a2	T	C	10: 33,658,083 (GRCm39)	K10R	probably benign	Het
Susd4	A	G	1: 182,686,025 (GRCm39)	N192D	probably damaging	Het
Tcp10a	T	A	17: 7,593,374 (GRCm39)	D32E	probably benign	Het
Tdpoz4	T	A	3: 93,704,339 (GRCm39)	V212D	probably damaging	Het
Tdrd5	T	A	1: 156,111,944 (GRCm39)	T479S	probably benign	Het
Tex10	T	C	4: 48,452,946 (GRCm39)	D671G	probably benign	Het
Tex55	A	G	16: 38,648,380 (GRCm39)	V243A	probably benign	Het
Traj37	T	C	14: 54,418,996 (GRCm39)		probably benign	Het
Ttc7b	G	A	12: 100,466,376 (GRCm39)	R79C	probably damaging	Het
Vmn2r115	T	A	17: 23,565,373 (GRCm39)	L420Q	probably benign	Het
Wdr24	T	A	17: 26,047,181 (GRCm39)		probably null	Het
Wdr81	T	A	11: 75,336,484 (GRCm39)	Q516L	probably damaging	Het
Zfp516	A	G	18: 82,974,164 (GRCm39)	T121A	probably benign	Het
Zmat1	A	T	X: 133,873,694 (GRCm39)	S566T	probably damaging	Homo

Other mutations in Mtcl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00429:Mtcl2	APN	2	156,872,784 (GRCm39)	missense	probably damaging	1.00
IGL00924:Mtcl2	APN	2	156,882,625 (GRCm39)	missense	probably damaging	0.99
IGL01723:Mtcl2	APN	2	156,872,534 (GRCm39)	missense	probably benign	0.00
IGL01749:Mtcl2	APN	2	156,863,461 (GRCm39)	splice site	probably benign
IGL02199:Mtcl2	APN	2	156,872,865 (GRCm39)	missense	probably damaging	1.00
IGL02262:Mtcl2	APN	2	156,872,826 (GRCm39)	missense	probably damaging	1.00
IGL02618:Mtcl2	APN	2	156,882,486 (GRCm39)	missense	probably damaging	1.00
IGL02643:Mtcl2	APN	2	156,882,663 (GRCm39)	missense	probably damaging	1.00
deglutition	UTSW	2	156,881,784 (GRCm39)	missense	possibly damaging	0.63
gulp	UTSW	2	156,865,737 (GRCm39)	nonsense	probably null
IGL02835:Mtcl2	UTSW	2	156,883,854 (GRCm39)	missense	possibly damaging	0.91
R0528:Mtcl2	UTSW	2	156,862,612 (GRCm39)	missense	probably damaging	1.00
R0535:Mtcl2	UTSW	2	156,875,209 (GRCm39)	missense	possibly damaging	0.89
R0726:Mtcl2	UTSW	2	156,902,182 (GRCm39)	missense	probably damaging	1.00
R1473:Mtcl2	UTSW	2	156,862,368 (GRCm39)	nonsense	probably null
R1589:Mtcl2	UTSW	2	156,869,557 (GRCm39)	missense	probably benign	0.05
R1615:Mtcl2	UTSW	2	156,862,663 (GRCm39)	missense	probably damaging	1.00
R1681:Mtcl2	UTSW	2	156,872,450 (GRCm39)	missense	possibly damaging	0.70
R1701:Mtcl2	UTSW	2	156,872,539 (GRCm39)	missense	probably damaging	1.00
R1872:Mtcl2	UTSW	2	156,882,181 (GRCm39)	missense	possibly damaging	0.88
R2056:Mtcl2	UTSW	2	156,864,747 (GRCm39)	missense	probably benign	0.00
R2118:Mtcl2	UTSW	2	156,875,245 (GRCm39)	missense	probably damaging	1.00
R2120:Mtcl2	UTSW	2	156,875,245 (GRCm39)	missense	probably damaging	1.00
R2121:Mtcl2	UTSW	2	156,875,245 (GRCm39)	missense	probably damaging	1.00
R2124:Mtcl2	UTSW	2	156,875,245 (GRCm39)	missense	probably damaging	1.00
R2249:Mtcl2	UTSW	2	156,882,013 (GRCm39)	missense	probably benign	0.08
R3147:Mtcl2	UTSW	2	156,862,284 (GRCm39)	missense	possibly damaging	0.91
R3758:Mtcl2	UTSW	2	156,862,558 (GRCm39)	missense	possibly damaging	0.77
R4646:Mtcl2	UTSW	2	156,862,426 (GRCm39)	missense	probably damaging	1.00
R4653:Mtcl2	UTSW	2	156,882,511 (GRCm39)	missense	probably damaging	1.00
R4736:Mtcl2	UTSW	2	156,862,474 (GRCm39)	missense	probably damaging	1.00
R4773:Mtcl2	UTSW	2	156,872,489 (GRCm39)	missense	probably benign	0.08
R4796:Mtcl2	UTSW	2	156,862,172 (GRCm39)	missense	probably benign
R4999:Mtcl2	UTSW	2	156,864,776 (GRCm39)	missense	probably benign	0.10
R5304:Mtcl2	UTSW	2	156,865,737 (GRCm39)	nonsense	probably null
R5369:Mtcl2	UTSW	2	156,882,654 (GRCm39)	missense	probably damaging	1.00
R5530:Mtcl2	UTSW	2	156,862,262 (GRCm39)	missense	probably damaging	1.00
R5712:Mtcl2	UTSW	2	156,872,841 (GRCm39)	missense	probably damaging	1.00
R5780:Mtcl2	UTSW	2	156,860,410 (GRCm39)	missense	probably damaging	0.98
R6162:Mtcl2	UTSW	2	156,881,784 (GRCm39)	missense	possibly damaging	0.63
R6253:Mtcl2	UTSW	2	156,863,339 (GRCm39)	missense	probably benign	0.00
R6303:Mtcl2	UTSW	2	156,882,684 (GRCm39)	missense	possibly damaging	0.91
R6304:Mtcl2	UTSW	2	156,882,684 (GRCm39)	missense	possibly damaging	0.91
R6523:Mtcl2	UTSW	2	156,902,263 (GRCm39)	nonsense	probably null
R7216:Mtcl2	UTSW	2	156,860,290 (GRCm39)	missense	possibly damaging	0.76
R7335:Mtcl2	UTSW	2	156,872,925 (GRCm39)	missense	possibly damaging	0.86
R7562:Mtcl2	UTSW	2	156,895,509 (GRCm39)	missense	probably damaging	1.00
R7593:Mtcl2	UTSW	2	156,882,776 (GRCm39)	missense	probably benign	0.40
R7788:Mtcl2	UTSW	2	156,869,504 (GRCm39)	missense	probably benign	0.09
R8013:Mtcl2	UTSW	2	156,872,706 (GRCm39)	critical splice donor site	probably null
R8263:Mtcl2	UTSW	2	156,869,510 (GRCm39)	missense	possibly damaging	0.94
R8299:Mtcl2	UTSW	2	156,862,651 (GRCm39)	missense	possibly damaging	0.93
R8814:Mtcl2	UTSW	2	156,872,451 (GRCm39)	nonsense	probably null
R9222:Mtcl2	UTSW	2	156,881,919 (GRCm39)	missense	probably benign	0.08
R9563:Mtcl2	UTSW	2	156,902,182 (GRCm39)	missense	probably damaging	1.00
R9607:Mtcl2	UTSW	2	156,869,488 (GRCm39)	missense	probably damaging	0.96
R9645:Mtcl2	UTSW	2	156,869,390 (GRCm39)	missense	probably damaging	1.00
R9690:Mtcl2	UTSW	2	156,862,134 (GRCm39)	missense	probably benign	0.06
R9727:Mtcl2	UTSW	2	156,862,168 (GRCm39)	missense	possibly damaging	0.89
X0019:Mtcl2	UTSW	2	156,862,184 (GRCm39)	missense	probably benign	0.04

Predicted Primers

PCR Primer
(F):5'- ATGAACCATGGCTGCCTTAGG -3'
(R):5'- TGCCTGGACAATGAGTGTG -3'

Sequencing Primer
(F):5'- TAGGTGATGACCAGGACTGCTC -3'
(R):5'- CAATGAGTGTGCTGACTTGCGAC -3'

Posted On

2015-09-25