Mutagenetix > Incidental Mutation

Incidental Mutation 'R4602:Phaf1'

345721

Institutional Source

Beutler Lab

Gene Symbol

Phaf1

Ensembl Gene

ENSMUSG00000031889

Gene Name

phagosome assembly factor 1

Synonyms

D230025D16Rik, Mytho, Lin10

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.289) question?

Stock #

R4602 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

105951779-105979685 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 105973520 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Lysine at position 282 (N282K)

Ref Sequence

ENSEMBL: ENSMUSP00000034361 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034361] [ENSMUST00000124113] [ENSMUST00000141957]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000034361
AA Change: N282K

PolyPhen 2 Score 0.724 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000034361
Gene: ENSMUSG00000031889
AA Change: N282K

Domain	Start	End	E-Value	Type
Pfam:UPF0183	15	407	1.7e-161	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000124113

SMART Domains

Protein: ENSMUSP00000119743
Gene: ENSMUSG00000031889

Domain	Start	End	E-Value	Type
Pfam:UPF0183	13	120	1.9e-52	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133035

Predicted Effect

probably benign
Transcript: ENSMUST00000141957

SMART Domains

Protein: ENSMUSP00000119148
Gene: ENSMUSG00000031889

Domain	Start	End	E-Value	Type
Pfam:UPF0183	13	161	2.8e-65	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156561

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.5%
20x: 95.7%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ahnak	A	G	19: 8,988,189 (GRCm39)	K3158E	possibly damaging	Het
Ak7	G	A	12: 105,679,834 (GRCm39)	V123M	probably benign	Het
Ankmy1	A	T	1: 92,816,372 (GRCm39)	N247K	probably benign	Het
Atp1a1	A	G	3: 101,494,259 (GRCm39)	V447A	probably benign	Het
Atp1a4	A	C	1: 172,067,332 (GRCm39)	M600R	probably damaging	Het
Baat	A	G	4: 49,502,727 (GRCm39)	Y132H	probably damaging	Het
Ceacam15	A	G	7: 16,405,906 (GRCm39)	V215A	probably damaging	Het
Celf2	G	T	2: 6,590,831 (GRCm39)	N279K	possibly damaging	Het
Cfap96	A	T	8: 46,423,505 (GRCm39)	I69N	probably damaging	Het
Clec14a	C	T	12: 58,314,767 (GRCm39)	R285H	probably benign	Het
Ctnna1	T	G	18: 35,312,880 (GRCm39)	I244R	possibly damaging	Het
Dcxr	T	A	11: 120,617,130 (GRCm39)	N105Y	possibly damaging	Het
Dnajc6	T	C	4: 101,468,461 (GRCm39)	F166L	probably damaging	Het
Ercc3	G	A	18: 32,378,624 (GRCm39)	A202T	probably benign	Het
Faf1	A	G	4: 109,584,625 (GRCm39)	D67G	probably benign	Het
Fancm	G	A	12: 65,171,718 (GRCm39)	R1786H	probably benign	Het
Fnbp1	A	G	2: 30,926,552 (GRCm39)		probably null	Het
Frem2	A	G	3: 53,455,228 (GRCm39)	L2116S	possibly damaging	Het
Gbp5	A	G	3: 142,209,546 (GRCm39)	E164G	probably benign	Het
Gm4922	A	T	10: 18,660,007 (GRCm39)	Y238*	probably null	Het
Gm8257	A	G	14: 44,893,774 (GRCm39)	Y62H	probably damaging	Het
Grin2b	A	G	6: 135,755,739 (GRCm39)	F525S	probably damaging	Het
Hjv	T	G	3: 96,434,869 (GRCm39)	S203A	probably benign	Het
Hsd17b3	C	A	13: 64,210,984 (GRCm39)		probably null	Het
Ighv1-23	T	A	12: 114,728,179 (GRCm39)	Q81L	probably benign	Het
Inpp4b	T	C	8: 82,696,164 (GRCm39)	V366A	probably damaging	Het
Jak1	G	T	4: 101,036,791 (GRCm39)	A283D	possibly damaging	Het
Kmt2d	G	T	15: 98,748,140 (GRCm39)		probably benign	Het
Mbtps1	A	T	8: 120,262,086 (GRCm39)	D354E	probably damaging	Het
Mettl17	T	C	14: 52,126,246 (GRCm39)	V218A	probably damaging	Het
Mrc2	G	A	11: 105,239,257 (GRCm39)		probably null	Het
Nfat5	C	T	8: 108,093,855 (GRCm39)	Q699*	probably null	Het
Or4s2b	G	A	2: 88,508,240 (GRCm39)	V14I	probably benign	Het
Or4s2b	T	G	2: 88,508,523 (GRCm39)	V101G	probably benign	Het
Or7e174	C	A	9: 20,012,540 (GRCm39)	H162N	probably benign	Het
Osbpl7	C	A	11: 96,947,095 (GRCm39)	S265R	possibly damaging	Het
Pcdh15	A	G	10: 74,430,046 (GRCm39)	T1258A	probably damaging	Het
Pcdh20	A	T	14: 88,705,866 (GRCm39)	L478Q	probably damaging	Het
Pde11a	A	G	2: 75,988,677 (GRCm39)	V488A	probably benign	Het
Phactr1	A	T	13: 43,248,441 (GRCm39)	E463D	probably benign	Het
Samd9l	A	T	6: 3,373,935 (GRCm39)	Y1109N	probably damaging	Het
Samd9l	GAA	GAAA	6: 3,373,937 (GRCm39)		probably null	Het
Secisbp2l	C	T	2: 125,582,657 (GRCm39)	G933D	possibly damaging	Het
Serpinb12	T	A	1: 106,876,883 (GRCm39)	D66E	probably benign	Het
Sgk2	G	A	2: 162,836,674 (GRCm39)		probably null	Het
Slco1a6	C	A	6: 142,047,378 (GRCm39)	C404F	probably benign	Het
Spaca6	C	T	17: 18,051,387 (GRCm39)	A21V	probably damaging	Het
Sphkap	G	T	1: 83,256,782 (GRCm39)	Y322*	probably null	Het
Sptlc3	G	A	2: 139,478,600 (GRCm39)	V520I	probably benign	Het
Stox2	A	G	8: 47,645,970 (GRCm39)	S497P	probably damaging	Het
Syt9	A	T	7: 107,035,594 (GRCm39)	K204*	probably null	Het
Taf3	A	G	2: 9,957,468 (GRCm39)	V233A	probably damaging	Het
Tbccd1	T	C	16: 22,637,285 (GRCm39)		probably null	Het
Tdrd5	T	A	1: 156,111,944 (GRCm39)	T479S	probably benign	Het
Tex10	T	C	4: 48,452,946 (GRCm39)	D671G	probably benign	Het
Tgtp2	T	C	11: 48,949,811 (GRCm39)	T254A	probably damaging	Het
Tmtc2	T	C	10: 105,249,391 (GRCm39)	Y114C	probably benign	Het
Tns2	C	T	15: 102,017,369 (GRCm39)	R281C	probably damaging	Het
Ubac1	A	T	2: 25,888,989 (GRCm39)	I402N	probably damaging	Het
Zmat1	A	T	X: 133,873,694 (GRCm39)	S566T	probably damaging	Homo

Other mutations in Phaf1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01935:Phaf1	APN	8	105,966,633 (GRCm39)	missense	probably damaging	0.99
IGL02058:Phaf1	APN	8	105,966,341 (GRCm39)	missense	probably damaging	1.00
IGL02162:Phaf1	APN	8	105,966,605 (GRCm39)	splice site	probably benign
IGL02264:Phaf1	APN	8	105,961,178 (GRCm39)	missense	possibly damaging	0.67
IGL02512:Phaf1	APN	8	105,961,110 (GRCm39)	splice site	probably benign
FR4340:Phaf1	UTSW	8	105,967,730 (GRCm39)	missense	probably benign
FR4342:Phaf1	UTSW	8	105,967,730 (GRCm39)	missense	probably benign
FR4589:Phaf1	UTSW	8	105,967,730 (GRCm39)	missense	probably benign
R0564:Phaf1	UTSW	8	105,966,603 (GRCm39)	splice site	probably benign
R1458:Phaf1	UTSW	8	105,973,188 (GRCm39)	critical splice donor site	probably null
R1705:Phaf1	UTSW	8	105,965,104 (GRCm39)	splice site	probably benign
R1860:Phaf1	UTSW	8	105,966,703 (GRCm39)	missense	probably null	1.00
R1861:Phaf1	UTSW	8	105,966,703 (GRCm39)	missense	probably null	1.00
R1893:Phaf1	UTSW	8	105,973,133 (GRCm39)	missense	probably damaging	1.00
R1969:Phaf1	UTSW	8	105,973,132 (GRCm39)	missense	possibly damaging	0.81
R2246:Phaf1	UTSW	8	105,973,132 (GRCm39)	missense	possibly damaging	0.81
R3914:Phaf1	UTSW	8	105,966,615 (GRCm39)	missense	probably benign	0.00
R4175:Phaf1	UTSW	8	105,967,763 (GRCm39)	missense	probably benign	0.09
R4176:Phaf1	UTSW	8	105,967,763 (GRCm39)	missense	probably benign	0.09
R5965:Phaf1	UTSW	8	105,961,171 (GRCm39)	missense	probably damaging	1.00
R7717:Phaf1	UTSW	8	105,978,236 (GRCm39)	missense	probably benign	0.12
R7787:Phaf1	UTSW	8	105,957,820 (GRCm39)	missense	probably damaging	1.00
R7881:Phaf1	UTSW	8	105,976,084 (GRCm39)	missense	probably benign	0.21
R8168:Phaf1	UTSW	8	105,975,401 (GRCm39)	missense	probably benign	0.02
R8949:Phaf1	UTSW	8	105,976,075 (GRCm39)	missense	probably benign
R9183:Phaf1	UTSW	8	105,957,840 (GRCm39)	missense	probably benign	0.01
Z1088:Phaf1	UTSW	8	105,957,804 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTGTAACCTGGAGATGTGTCCAC -3'
(R):5'- CGCAGCATTCCTCCATAGTC -3'

Sequencing Primer
(F):5'- TGGAGATGTGTCCACACTAAC -3'
(R):5'- CCATAGTCTTGACTACACTGGGATAC -3'

Posted On

2015-09-25