Incidental Mutation 'R0255:Prg4'
ID 34626
Institutional Source Beutler Lab
Gene Symbol Prg4
Ensembl Gene ENSMUSG00000006014
Gene Name proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)
Synonyms MSF, SZP, lubricin, DOL54
MMRRC Submission 038486-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.125) question?
Stock # R0255 (G1)
Quality Score 196
Status Not validated
Chromosome 1
Chromosomal Location 150325163-150341916 bp(-) (GRCm39)
Type of Mutation intron
DNA Base Change (assembly) C to T at 150331558 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000125551 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000006171] [ENSMUST00000111901] [ENSMUST00000111902] [ENSMUST00000159035] [ENSMUST00000161320] [ENSMUST00000161611] [ENSMUST00000162367] [ENSMUST00000164600]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000006171
SMART Domains Protein: ENSMUSP00000006171
Gene: ENSMUSG00000006014

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
SO 26 68 9.21e-18 SMART
SO 69 108 4.21e-12 SMART
low complexity region 110 124 N/A INTRINSIC
HX 169 211 1.67e-7 SMART
HX 213 256 3.76e-10 SMART
Blast:HX 369 422 2e-27 BLAST
Predicted Effect unknown
Transcript: ENSMUST00000111901
AA Change: E284K
SMART Domains Protein: ENSMUSP00000107532
Gene: ENSMUSG00000006014
AA Change: E284K

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
SO 26 68 9.21e-18 SMART
SO 69 108 4.21e-12 SMART
low complexity region 110 124 N/A INTRINSIC
low complexity region 141 151 N/A INTRINSIC
low complexity region 189 221 N/A INTRINSIC
low complexity region 241 535 N/A INTRINSIC
low complexity region 570 623 N/A INTRINSIC
HX 711 753 1.67e-7 SMART
HX 755 798 3.76e-10 SMART
Blast:HX 911 964 5e-27 BLAST
Predicted Effect unknown
Transcript: ENSMUST00000111902
AA Change: E331K
SMART Domains Protein: ENSMUSP00000107533
Gene: ENSMUSG00000006014
AA Change: E331K

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
SO 25 67 2.71e-15 SMART
low complexity region 69 81 N/A INTRINSIC
low complexity region 86 143 N/A INTRINSIC
low complexity region 150 171 N/A INTRINSIC
low complexity region 188 198 N/A INTRINSIC
low complexity region 236 268 N/A INTRINSIC
low complexity region 288 582 N/A INTRINSIC
internal_repeat_1 588 614 2.72e-5 PROSPERO
low complexity region 617 670 N/A INTRINSIC
internal_repeat_1 680 706 2.72e-5 PROSPERO
HX 758 800 1.67e-7 SMART
HX 802 845 3.76e-10 SMART
Blast:HX 958 1011 4e-27 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000159035
SMART Domains Protein: ENSMUSP00000124410
Gene: ENSMUSG00000006014

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
SO 25 67 2.71e-15 SMART
low complexity region 69 81 N/A INTRINSIC
low complexity region 88 99 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000161320
SMART Domains Protein: ENSMUSP00000124801
Gene: ENSMUSG00000006014

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
SO 25 67 3.83e-15 SMART
low complexity region 69 83 N/A INTRINSIC
low complexity region 100 110 N/A INTRINSIC
low complexity region 148 179 N/A INTRINSIC
Predicted Effect unknown
Transcript: ENSMUST00000161611
AA Change: E372K
SMART Domains Protein: ENSMUSP00000125677
Gene: ENSMUSG00000006014
AA Change: E372K

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
SO 26 68 9.21e-18 SMART
SO 69 108 2.77e-12 SMART
low complexity region 110 122 N/A INTRINSIC
low complexity region 127 184 N/A INTRINSIC
low complexity region 191 212 N/A INTRINSIC
low complexity region 229 239 N/A INTRINSIC
internal_repeat_3 244 271 7.42e-5 PROSPERO
low complexity region 277 309 N/A INTRINSIC
Pfam:Cornifin 578 691 2.2e-9 PFAM
internal_repeat_3 796 825 7.42e-5 PROSPERO
internal_repeat_2 797 823 1.24e-5 PROSPERO
low complexity region 826 879 N/A INTRINSIC
internal_repeat_2 889 915 1.24e-5 PROSPERO
HX 967 1009 1.67e-7 SMART
HX 1011 1054 3.76e-10 SMART
Blast:HX 1167 1220 6e-27 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000162367
SMART Domains Protein: ENSMUSP00000125551
Gene: ENSMUSG00000006014

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
SO 26 68 9.21e-18 SMART
SO 69 108 4.21e-12 SMART
low complexity region 110 124 N/A INTRINSIC
HX 169 211 1.67e-7 SMART
HX 213 256 3.76e-10 SMART
Blast:HX 369 422 2e-27 BLAST
Predicted Effect unknown
Transcript: ENSMUST00000164600
AA Change: E372K
SMART Domains Protein: ENSMUSP00000128943
Gene: ENSMUSG00000006014
AA Change: E372K

DomainStartEndE-ValueType
signal peptide 1 24 N/A INTRINSIC
SO 26 68 9.21e-18 SMART
SO 69 108 2.77e-12 SMART
low complexity region 110 122 N/A INTRINSIC
low complexity region 127 184 N/A INTRINSIC
low complexity region 191 212 N/A INTRINSIC
low complexity region 229 239 N/A INTRINSIC
internal_repeat_3 244 271 7.42e-5 PROSPERO
low complexity region 277 309 N/A INTRINSIC
Pfam:Cornifin 404 497 2.4e-14 PFAM
Pfam:Cornifin 468 584 3.2e-15 PFAM
Pfam:Cornifin 550 648 3.3e-16 PFAM
Pfam:Cornifin 625 722 2.1e-15 PFAM
Pfam:Cornifin 647 743 7.8e-16 PFAM
Pfam:Cornifin 706 822 1.4e-12 PFAM
low complexity region 826 879 N/A INTRINSIC
internal_repeat_2 889 915 1.24e-5 PROSPERO
HX 967 1009 1.67e-7 SMART
HX 1011 1054 3.76e-10 SMART
Blast:HX 1167 1220 6e-27 BLAST
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.7%
  • 10x: 97.3%
  • 20x: 95.6%
Validation Efficiency 93% (102/110)
MGI Phenotype PHENOTYPE: Aging homozygous null mice develop a hopping gait, irregular endochondral growth plates, altered cartilage surface, camptodactyly, progressive synovial hyperplasia and, ultimately, joint failure. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 108 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700113H08Rik T C 10: 87,061,907 (GRCm39) F119S probably damaging Het
Abca13 C A 11: 9,531,545 (GRCm39) Q4591K probably damaging Het
Anapc1 A T 2: 128,476,631 (GRCm39) M1329K probably damaging Het
Aoah A T 13: 21,163,710 (GRCm39) K338* probably null Het
Ascc3 A T 10: 50,521,154 (GRCm39) T416S probably benign Het
Baz2a A G 10: 127,950,508 (GRCm39) T484A possibly damaging Het
Btnl6 T C 17: 34,727,477 (GRCm39) N351S probably benign Het
Cacna1s T G 1: 136,046,544 (GRCm39) I1772S possibly damaging Het
Ccdc8 A G 7: 16,729,582 (GRCm39) D357G unknown Het
Ccna1 T C 3: 54,958,049 (GRCm39) E152G probably damaging Het
Cct4 A G 11: 22,949,073 (GRCm39) D273G probably damaging Het
Cd9 A G 6: 125,440,703 (GRCm39) V96A probably damaging Het
Cdc5l G A 17: 45,726,610 (GRCm39) R321W probably damaging Het
Cdh20 T C 1: 109,922,036 (GRCm39) S43P probably benign Het
Cep95 G A 11: 106,702,097 (GRCm39) V365M probably benign Het
Ces1c T C 8: 93,854,152 (GRCm39) T128A probably benign Het
Chil5 A G 3: 105,926,583 (GRCm39) V82A probably damaging Het
Clmn T C 12: 104,748,023 (GRCm39) D508G probably benign Het
Cog8 A T 8: 107,775,777 (GRCm39) probably benign Het
Cst3 A T 2: 148,717,089 (GRCm39) V70E probably damaging Het
Ctcf A G 8: 106,390,671 (GRCm39) T93A possibly damaging Het
Ctsk C A 3: 95,416,188 (GRCm39) N315K probably benign Het
Cyp2j12 G T 4: 96,029,262 (GRCm39) D6E probably benign Het
Dhx34 A G 7: 15,939,917 (GRCm39) V655A probably benign Het
Dock10 T C 1: 80,583,593 (GRCm39) Y203C probably damaging Het
Dok7 A T 5: 35,221,678 (GRCm39) D26V probably damaging Het
Epha8 G A 4: 136,667,597 (GRCm39) H295Y probably damaging Het
Esf1 A G 2: 139,990,843 (GRCm39) probably benign Het
Fam83c A G 2: 155,671,672 (GRCm39) S588P probably benign Het
Fat3 G A 9: 15,881,002 (GRCm39) probably benign Het
Fhdc1 T C 3: 84,360,817 (GRCm39) probably benign Het
Frmd4b A G 6: 97,285,047 (GRCm39) V338A probably damaging Het
Fsd1l A G 4: 53,694,727 (GRCm39) T394A probably damaging Het
Gbf1 A G 19: 46,242,549 (GRCm39) probably benign Het
Glg1 G T 8: 111,886,490 (GRCm39) Q1101K possibly damaging Het
Glt8d2 T A 10: 82,487,361 (GRCm39) probably null Het
Gm19345 T C 7: 19,588,855 (GRCm39) probably benign Het
Gpr179 A T 11: 97,226,892 (GRCm39) D1754E probably benign Het
Hydin A G 8: 111,291,650 (GRCm39) T3381A probably benign Het
Igkv12-41 G A 6: 69,835,822 (GRCm39) T16I possibly damaging Het
Insl5 A G 4: 102,875,313 (GRCm39) *146Q probably null Het
Iqce A T 5: 140,651,957 (GRCm39) I655N possibly damaging Het
Irf2bp1 G A 7: 18,738,927 (GRCm39) R189H possibly damaging Het
Itprid2 T A 2: 79,490,810 (GRCm39) L976Q probably damaging Het
Itsn1 C T 16: 91,602,978 (GRCm39) probably benign Het
Kansl3 A T 1: 36,384,050 (GRCm39) I724N probably benign Het
Kcna4 T C 2: 107,126,907 (GRCm39) I547T probably damaging Het
Klk1b4 A T 7: 43,860,158 (GRCm39) I91F probably benign Het
Lmbr1 A G 5: 29,457,753 (GRCm39) S282P probably damaging Het
Lrrc17 G A 5: 21,765,967 (GRCm39) A150T probably benign Het
Lrrc2 A G 9: 110,809,966 (GRCm39) E334G possibly damaging Het
Lrrc7 G A 3: 157,866,475 (GRCm39) Q1077* probably null Het
Mapk8 A T 14: 33,109,264 (GRCm39) probably benign Het
Mast1 T A 8: 85,638,650 (GRCm39) T1560S probably benign Het
Mdh1b C A 1: 63,758,777 (GRCm39) A272S probably damaging Het
Myo15b T C 11: 115,777,109 (GRCm39) Y912H probably damaging Het
Nf1 T G 11: 79,299,525 (GRCm39) probably null Het
Nme7 T A 1: 164,172,944 (GRCm39) D218E probably damaging Het
Nsun7 T A 5: 66,446,751 (GRCm39) probably benign Het
Nxpe2 A G 9: 48,251,870 (GRCm39) probably null Het
Or1e34 A G 11: 73,778,655 (GRCm39) V181A probably benign Het
Or2ag16 G A 7: 106,352,196 (GRCm39) T133I probably benign Het
Or2n1c T G 17: 38,519,286 (GRCm39) I50R probably benign Het
Or5p53 T A 7: 107,533,375 (GRCm39) V216D probably damaging Het
P2ry1 T C 3: 60,910,951 (GRCm39) V30A probably benign Het
Pgm2 T A 5: 64,269,386 (GRCm39) I491N possibly damaging Het
Pkd1l3 A T 8: 110,365,386 (GRCm39) D1169V probably damaging Het
Poldip2 T A 11: 78,403,189 (GRCm39) S18T probably benign Het
Prkab2 T A 3: 97,574,728 (GRCm39) Y241* probably null Het
Prmt7 A G 8: 106,953,839 (GRCm39) probably benign Het
Proser3 T A 7: 30,245,842 (GRCm39) R80W probably damaging Het
Prr12 A G 7: 44,699,415 (GRCm39) probably benign Het
Psmd1 A T 1: 86,006,304 (GRCm39) L223F probably damaging Het
Rab13 A G 3: 90,131,088 (GRCm39) probably benign Het
Rgl1 C T 1: 152,428,347 (GRCm39) C294Y probably damaging Het
Rpl21-ps4 C A 14: 11,227,556 (GRCm38) noncoding transcript Het
Rusc2 T C 4: 43,423,954 (GRCm39) V1036A probably damaging Het
Sae1 T A 7: 16,104,247 (GRCm39) K121* probably null Het
Sap130 C T 18: 31,813,559 (GRCm39) P539S probably damaging Het
Saxo4 C T 19: 10,452,418 (GRCm39) R364Q probably damaging Het
Scube2 A G 7: 109,424,079 (GRCm39) L475P probably damaging Het
Sec16a T C 2: 26,321,198 (GRCm39) D1298G probably damaging Het
Serpinb9b T C 13: 33,222,003 (GRCm39) F206L probably benign Het
Sh3bp1 T A 15: 78,788,534 (GRCm39) Y202* probably null Het
Shprh T A 10: 11,062,135 (GRCm39) C1177S possibly damaging Het
Slc27a6 T C 18: 58,742,937 (GRCm39) Y542H possibly damaging Het
Slc41a1 T C 1: 131,771,650 (GRCm39) probably benign Het
Slc46a1 T C 11: 78,361,625 (GRCm39) F424L probably damaging Het
Slc66a2 C T 18: 80,306,733 (GRCm39) A101V probably benign Het
Slc6a12 G A 6: 121,333,877 (GRCm39) V238I probably damaging Het
Slc6a20a A G 9: 123,493,686 (GRCm39) V65A probably damaging Het
Slc9c1 T A 16: 45,374,663 (GRCm39) S343T probably benign Het
Spcs3 C A 8: 54,981,415 (GRCm39) R60I probably benign Het
Tbc1d16 C A 11: 119,038,401 (GRCm39) R764L possibly damaging Het
Tcaf2 A T 6: 42,619,838 (GRCm39) V63E possibly damaging Het
Tmc1 G T 19: 20,766,951 (GRCm39) A750E possibly damaging Het
Tmem273 A G 14: 32,530,320 (GRCm39) K83E possibly damaging Het
Tmem81 C G 1: 132,435,567 (GRCm39) I124M probably damaging Het
Tmx3 T C 18: 90,558,130 (GRCm39) I394T probably damaging Het
Trank1 G A 9: 111,195,092 (GRCm39) E1039K possibly damaging Het
Trpc4ap A G 2: 155,499,866 (GRCm39) probably benign Het
Tsen54 T C 11: 115,706,234 (GRCm39) C123R probably damaging Het
Ubtd1 A G 19: 42,020,373 (GRCm39) D39G possibly damaging Het
Vmn1r181 A T 7: 23,683,759 (GRCm39) M75L probably benign Het
Zc3h7a T C 16: 10,958,601 (GRCm39) T847A probably damaging Het
Zc3hav1 A G 6: 38,313,485 (GRCm39) C187R probably damaging Het
Zfp692 G A 11: 58,201,229 (GRCm39) probably benign Het
Zmiz1 G A 14: 25,654,919 (GRCm39) probably benign Het
Other mutations in Prg4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00493:Prg4 APN 1 150,327,671 (GRCm39) missense probably damaging 0.99
IGL02033:Prg4 APN 1 150,331,619 (GRCm39) intron probably benign
IGL02154:Prg4 APN 1 150,330,613 (GRCm39) intron probably benign
IGL03111:Prg4 APN 1 150,327,653 (GRCm39) missense probably benign 0.06
IGL03177:Prg4 APN 1 150,331,354 (GRCm39) intron probably benign
IGL03260:Prg4 APN 1 150,331,378 (GRCm39) intron probably benign
IGL03281:Prg4 APN 1 150,325,839 (GRCm39) splice site probably benign
R0046:Prg4 UTSW 1 150,331,837 (GRCm39) missense possibly damaging 0.53
R0046:Prg4 UTSW 1 150,331,837 (GRCm39) missense possibly damaging 0.53
R0196:Prg4 UTSW 1 150,330,243 (GRCm39) intron probably benign
R0233:Prg4 UTSW 1 150,329,298 (GRCm39) splice site probably benign
R0616:Prg4 UTSW 1 150,336,462 (GRCm39) missense probably damaging 1.00
R1016:Prg4 UTSW 1 150,330,442 (GRCm39) intron probably benign
R1826:Prg4 UTSW 1 150,327,760 (GRCm39) missense probably benign 0.09
R1862:Prg4 UTSW 1 150,336,420 (GRCm39) missense probably damaging 0.99
R1863:Prg4 UTSW 1 150,336,420 (GRCm39) missense probably damaging 0.99
R1922:Prg4 UTSW 1 150,325,750 (GRCm39) nonsense probably null
R1940:Prg4 UTSW 1 150,331,774 (GRCm39) missense possibly damaging 0.53
R3765:Prg4 UTSW 1 150,327,122 (GRCm39) missense probably damaging 0.97
R3855:Prg4 UTSW 1 150,327,751 (GRCm39) missense probably damaging 1.00
R3894:Prg4 UTSW 1 150,330,510 (GRCm39) intron probably benign
R3895:Prg4 UTSW 1 150,330,510 (GRCm39) intron probably benign
R3912:Prg4 UTSW 1 150,327,619 (GRCm39) missense probably damaging 1.00
R3935:Prg4 UTSW 1 150,333,908 (GRCm39) missense possibly damaging 0.68
R4050:Prg4 UTSW 1 150,330,510 (GRCm39) intron probably benign
R4475:Prg4 UTSW 1 150,330,610 (GRCm39) intron probably benign
R4794:Prg4 UTSW 1 150,330,297 (GRCm39) intron probably benign
R4910:Prg4 UTSW 1 150,331,574 (GRCm39) intron probably benign
R4911:Prg4 UTSW 1 150,331,574 (GRCm39) intron probably benign
R4993:Prg4 UTSW 1 150,336,432 (GRCm39) missense probably damaging 1.00
R5378:Prg4 UTSW 1 150,330,977 (GRCm39) intron probably benign
R5381:Prg4 UTSW 1 150,330,204 (GRCm39) intron probably benign
R5452:Prg4 UTSW 1 150,331,519 (GRCm39) intron probably benign
R5870:Prg4 UTSW 1 150,331,300 (GRCm39) nonsense probably null
R5888:Prg4 UTSW 1 150,328,101 (GRCm39) missense probably damaging 1.00
R5929:Prg4 UTSW 1 150,329,880 (GRCm39) missense probably benign 0.01
R6058:Prg4 UTSW 1 150,327,197 (GRCm39) missense probably damaging 0.99
R6059:Prg4 UTSW 1 150,325,748 (GRCm39) missense possibly damaging 0.67
R6232:Prg4 UTSW 1 150,331,567 (GRCm39) intron probably benign
R6272:Prg4 UTSW 1 150,330,517 (GRCm39) intron probably benign
R6459:Prg4 UTSW 1 150,330,052 (GRCm39) intron probably benign
R6659:Prg4 UTSW 1 150,336,432 (GRCm39) missense probably damaging 1.00
R6663:Prg4 UTSW 1 150,330,852 (GRCm39) intron probably benign
R6882:Prg4 UTSW 1 150,329,246 (GRCm39) missense probably damaging 1.00
R6970:Prg4 UTSW 1 150,331,657 (GRCm39) intron probably benign
R7078:Prg4 UTSW 1 150,334,014 (GRCm39) missense possibly damaging 0.91
R7102:Prg4 UTSW 1 150,328,005 (GRCm39) missense probably damaging 1.00
R7264:Prg4 UTSW 1 150,329,818 (GRCm39) missense not run
R7487:Prg4 UTSW 1 150,331,656 (GRCm39) missense unknown
R7531:Prg4 UTSW 1 150,330,786 (GRCm39) missense unknown
R7651:Prg4 UTSW 1 150,330,696 (GRCm39) missense unknown
R7701:Prg4 UTSW 1 150,333,293 (GRCm39) missense possibly damaging 0.53
R8072:Prg4 UTSW 1 150,331,774 (GRCm39) missense possibly damaging 0.53
R8168:Prg4 UTSW 1 150,331,601 (GRCm39) missense unknown
R8248:Prg4 UTSW 1 150,330,877 (GRCm39) missense unknown
R8436:Prg4 UTSW 1 150,331,318 (GRCm39) missense unknown
R8460:Prg4 UTSW 1 150,331,692 (GRCm39) missense possibly damaging 0.83
R8514:Prg4 UTSW 1 150,330,396 (GRCm39) missense unknown
R8904:Prg4 UTSW 1 150,331,810 (GRCm39) missense possibly damaging 0.83
R9072:Prg4 UTSW 1 150,331,288 (GRCm39) missense unknown
R9073:Prg4 UTSW 1 150,331,288 (GRCm39) missense unknown
R9274:Prg4 UTSW 1 150,331,924 (GRCm39) missense possibly damaging 0.53
R9337:Prg4 UTSW 1 150,327,116 (GRCm39) missense probably damaging 1.00
R9488:Prg4 UTSW 1 150,327,024 (GRCm39) missense probably benign
R9613:Prg4 UTSW 1 150,331,660 (GRCm39) missense unknown
R9670:Prg4 UTSW 1 150,326,618 (GRCm39) missense probably benign 0.01
X0024:Prg4 UTSW 1 150,330,243 (GRCm39) intron probably benign
Predicted Primers
Posted On 2013-05-09