Mutagenetix > Incidental Mutation

Incidental Mutation 'R3946:Tle4'

348319

Institutional Source

Beutler Lab

Gene Symbol

Tle4

Ensembl Gene

ENSMUSG00000024642

Gene Name

transducin-like enhancer of split 4

Synonyms

Bce1, Grg4, ESTM14, ESTM13, 5730411M05Rik

MMRRC Submission

040827-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R3946 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

14425514-14575415 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 14574752 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Asparagine at position 9 (Y9N)

Ref Sequence

ENSEMBL: ENSMUSP00000126249 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000052011] [ENSMUST00000167776]

AlphaFold

Q62441

Predicted Effect

probably damaging
Transcript: ENSMUST00000052011
AA Change: Y9N

PolyPhen 2 Score 0.979 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000057527
Gene: ENSMUSG00000024642
AA Change: Y9N

Domain	Start	End	E-Value	Type
Pfam:TLE_N	8	138	9.1e-76	PFAM
low complexity region	164	178	N/A	INTRINSIC
low complexity region	201	216	N/A	INTRINSIC
low complexity region	226	238	N/A	INTRINSIC
low complexity region	289	316	N/A	INTRINSIC
WD40	477	514	4.18e-2	SMART
WD40	520	561	3.64e-2	SMART
WD40	566	605	9.38e-5	SMART
WD40	608	647	1.14e-8	SMART
WD40	650	688	2.29e1	SMART
WD40	690	729	7.39e-3	SMART
WD40	730	770	4.14e-1	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000167776
AA Change: Y9N

PolyPhen 2 Score 0.982 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000126249
Gene: ENSMUSG00000024642
AA Change: Y9N

Domain	Start	End	E-Value	Type
Pfam:TLE_N	8	138	5.1e-76	PFAM
low complexity region	164	178	N/A	INTRINSIC
low complexity region	199	216	N/A	INTRINSIC
low complexity region	226	238	N/A	INTRINSIC
low complexity region	289	316	N/A	INTRINSIC
WD40	477	514	4.18e-2	SMART
WD40	520	561	3.64e-2	SMART
WD40	566	605	9.38e-5	SMART
WD40	608	647	1.14e-8	SMART
WD40	650	688	2.29e1	SMART
WD40	690	729	7.39e-3	SMART
WD40	730	770	4.14e-1	SMART

Meta Mutation Damage Score

0.5619

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.0%
20x: 94.1%

Validation Efficiency

98% (60/61)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele are runted and die around 4 weeks of age with leukocytopenia, B cell lymphopenia, reduced bone mineralization and reduced hematopoietic stem cell number and function. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abi2	A	G	1: 60,492,913 (GRCm39)	Q328R	probably damaging	Het
Agr3	C	A	12: 35,997,512 (GRCm39)		probably benign	Het
Brca2	T	A	5: 150,460,169 (GRCm39)	S481R	probably damaging	Het
Cabin1	T	G	10: 75,581,093 (GRCm39)	Q411P	probably damaging	Het
Calr3	A	G	8: 73,197,464 (GRCm39)	Y22H	probably damaging	Het
Caprin1	T	A	2: 103,627,111 (GRCm39)	I59F	probably damaging	Het
Cdk5rap1	T	C	2: 154,190,636 (GRCm39)	T442A	probably damaging	Het
Chn2	T	C	6: 54,246,411 (GRCm39)		probably benign	Het
Cic	C	A	7: 24,971,771 (GRCm39)	R501S	possibly damaging	Het
Coch	A	G	12: 51,648,595 (GRCm39)		probably null	Het
Defa25	G	A	8: 21,574,506 (GRCm39)	V17I	probably null	Het
Dglucy	T	C	12: 100,804,959 (GRCm39)		probably null	Het
Dtx1	T	G	5: 120,819,351 (GRCm39)	T616P	possibly damaging	Het
Eef1g	T	C	19: 8,947,341 (GRCm39)	L171P	probably benign	Het
Fam135a	A	G	1: 24,069,475 (GRCm39)	S465P	probably damaging	Het
Gm14412	A	T	2: 177,006,478 (GRCm39)	C472*	probably null	Het
Gm7104	T	C	12: 88,252,812 (GRCm39)		noncoding transcript	Het
Got2	A	G	8: 96,614,858 (GRCm39)	S26P	probably benign	Het
H2-M11	A	G	17: 36,860,123 (GRCm39)	I329M	probably damaging	Het
Hmcn2	T	A	2: 31,272,406 (GRCm39)	D1295E	possibly damaging	Het
Hoxd12	G	T	2: 74,505,771 (GRCm39)	R114L	probably damaging	Het
Ilkap	A	C	1: 91,314,972 (GRCm39)	D124E	probably damaging	Het
Maco1	A	G	4: 134,531,792 (GRCm39)	Y626H	probably damaging	Het
Med6	T	C	12: 81,628,625 (GRCm39)	Y88C	probably damaging	Het
Mep1a	A	T	17: 43,785,932 (GRCm39)	L719*	probably null	Het
Mmp23	T	C	4: 155,736,480 (GRCm39)	Y187C	probably damaging	Het
Myo1g	A	G	11: 6,470,760 (GRCm39)	M32T	possibly damaging	Het
Ncstn	T	C	1: 171,895,061 (GRCm39)	E614G	probably benign	Het
Nr2c2	C	T	6: 92,140,119 (GRCm39)	R464W	probably damaging	Het
Or4f15	G	A	2: 111,813,642 (GRCm39)	T259M	possibly damaging	Het
Otub2	T	A	12: 103,359,085 (GRCm39)	L58*	probably null	Het
Pcdhga12	G	A	18: 37,900,682 (GRCm39)	V505I	probably benign	Het
Pcdhga9	T	A	18: 37,870,897 (GRCm39)	V242D	probably damaging	Het
Pex1	C	T	5: 3,676,084 (GRCm39)	L891F	probably damaging	Het
Pgm2	C	T	5: 64,269,404 (GRCm39)	T497I	probably benign	Het
Pikfyve	T	C	1: 65,235,840 (GRCm39)	F171L	probably damaging	Het
Pilrb1	T	G	5: 137,855,654 (GRCm39)	K79T	probably benign	Het
Pin1	C	T	9: 20,566,660 (GRCm39)	R21W	probably damaging	Het
Prxl2c	T	C	13: 64,456,912 (GRCm39)	I104V	probably damaging	Het
Ptprq	A	G	10: 107,522,253 (GRCm39)		probably benign	Het
Rad17	G	A	13: 100,759,371 (GRCm39)	A552V	possibly damaging	Het
Rbbp8	A	G	18: 11,851,925 (GRCm39)	T249A	probably benign	Het
Rtkn	A	T	6: 83,112,957 (GRCm39)	I10F	probably benign	Het
Scube2	T	A	7: 109,456,797 (GRCm39)	I103F	possibly damaging	Het
Sec23b	A	G	2: 144,423,893 (GRCm39)	H514R	probably benign	Het
Serbp1	T	A	6: 67,249,204 (GRCm39)	D223E	probably benign	Het
Slc14a1	C	A	18: 78,154,607 (GRCm39)	V260L	probably benign	Het
Slc22a23	A	G	13: 34,367,109 (GRCm39)	I633T	probably damaging	Het
Stk19	A	T	17: 35,043,723 (GRCm39)		probably benign	Het
Svs5	T	C	2: 164,079,047 (GRCm39)	M287V	probably benign	Het
Syne3	T	A	12: 104,924,325 (GRCm39)	Q358L	probably damaging	Het
Synj1	A	G	16: 90,806,984 (GRCm39)	F58L	possibly damaging	Het
Tg	T	C	15: 66,545,872 (GRCm39)	V198A	probably damaging	Het
Tmx3	G	A	18: 90,542,459 (GRCm39)	A186T	possibly damaging	Het
Traf3	G	A	12: 111,221,679 (GRCm39)	S280N	possibly damaging	Het
Trmt13	A	G	3: 116,375,167 (GRCm39)	F447S	probably damaging	Het
Trp53bp1	T	A	2: 121,059,107 (GRCm39)	H918L	probably damaging	Het
Ush2a	T	G	1: 188,460,701 (GRCm39)	V2654G	probably benign	Het
Vinac1	A	G	2: 128,881,521 (GRCm39)	L135P	probably damaging	Het
Vmn2r25	A	G	6: 123,817,057 (GRCm39)	Y175H	probably damaging	Het
Zfp335	T	C	2: 164,734,109 (GRCm39)	D1330G	probably damaging	Het

Other mutations in Tle4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01308:Tle4	APN	19	14,445,625 (GRCm39)	missense	probably benign	0.00
IGL01449:Tle4	APN	19	14,442,704 (GRCm39)	missense	probably benign	0.00
IGL01618:Tle4	APN	19	14,522,178 (GRCm39)	missense	probably benign	0.07
IGL01636:Tle4	APN	19	14,429,897 (GRCm39)	missense	probably damaging	0.97
IGL01750:Tle4	APN	19	14,427,153 (GRCm39)	missense	probably damaging	1.00
IGL02376:Tle4	APN	19	14,571,768 (GRCm39)	missense	probably damaging	1.00
BB006:Tle4	UTSW	19	14,495,244 (GRCm39)	missense	probably benign	0.09
BB016:Tle4	UTSW	19	14,495,244 (GRCm39)	missense	probably benign	0.09
R0006:Tle4	UTSW	19	14,444,078 (GRCm39)	splice site	probably benign
R1068:Tle4	UTSW	19	14,429,543 (GRCm39)	missense	probably damaging	1.00
R1174:Tle4	UTSW	19	14,445,626 (GRCm39)	missense	probably benign
R1594:Tle4	UTSW	19	14,430,970 (GRCm39)	nonsense	probably null
R1671:Tle4	UTSW	19	14,431,103 (GRCm39)	missense	probably damaging	1.00
R1891:Tle4	UTSW	19	14,522,150 (GRCm39)	critical splice donor site	probably null
R1951:Tle4	UTSW	19	14,493,721 (GRCm39)	critical splice donor site	probably null
R2068:Tle4	UTSW	19	14,427,113 (GRCm39)	nonsense	probably null
R3858:Tle4	UTSW	19	14,445,577 (GRCm39)	missense	probably benign	0.11
R3859:Tle4	UTSW	19	14,445,577 (GRCm39)	missense	probably benign	0.11
R4357:Tle4	UTSW	19	14,445,625 (GRCm39)	missense	probably benign	0.00
R4395:Tle4	UTSW	19	14,495,302 (GRCm39)	missense	probably benign	0.20
R4491:Tle4	UTSW	19	14,432,229 (GRCm39)	missense	probably damaging	1.00
R4860:Tle4	UTSW	19	14,441,709 (GRCm39)	missense	probably benign	0.30
R4860:Tle4	UTSW	19	14,441,709 (GRCm39)	missense	probably benign	0.30
R5336:Tle4	UTSW	19	14,432,103 (GRCm39)	critical splice donor site	probably null
R5516:Tle4	UTSW	19	14,432,253 (GRCm39)	missense	probably damaging	0.99
R5611:Tle4	UTSW	19	14,427,159 (GRCm39)	missense	probably damaging	1.00
R6032:Tle4	UTSW	19	14,429,472 (GRCm39)	missense	possibly damaging	0.74
R6032:Tle4	UTSW	19	14,429,472 (GRCm39)	missense	possibly damaging	0.74
R6113:Tle4	UTSW	19	14,572,952 (GRCm39)	critical splice donor site	probably null
R6513:Tle4	UTSW	19	14,429,056 (GRCm39)	missense	probably damaging	0.99
R6995:Tle4	UTSW	19	14,541,817 (GRCm39)	critical splice acceptor site	probably null
R7175:Tle4	UTSW	19	14,429,071 (GRCm39)	missense	probably damaging	1.00
R7310:Tle4	UTSW	19	14,495,155 (GRCm39)	missense	probably benign	0.04
R7929:Tle4	UTSW	19	14,495,244 (GRCm39)	missense	probably benign	0.09
R8369:Tle4	UTSW	19	14,429,876 (GRCm39)	missense	probably benign	0.03
R8396:Tle4	UTSW	19	14,432,323 (GRCm39)	nonsense	probably null
R8847:Tle4	UTSW	19	14,493,737 (GRCm39)	nonsense	probably null
R9145:Tle4	UTSW	19	14,445,583 (GRCm39)	missense	probably benign
R9279:Tle4	UTSW	19	14,429,890 (GRCm39)	missense	probably damaging	1.00
R9327:Tle4	UTSW	19	14,574,149 (GRCm39)	missense	probably damaging	1.00
R9786:Tle4	UTSW	19	14,495,304 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- CCTACCCGGAATCGAAAGTG -3'
(R):5'- TTCATTCCGAGGAATAGCAGCC -3'

Sequencing Primer
(F):5'- AATCGAAAGTGGCCCGTC -3'
(R):5'- TCCGAGGAATAGCAGCCAATTAAAAG -3'

Posted On

2015-10-05