Mutagenetix > Incidental Mutation

Incidental Mutation 'R4673:Kctd1'

348654

Institutional Source

Beutler Lab

Gene Symbol

Kctd1

Ensembl Gene

ENSMUSG00000036225

Gene Name

potassium channel tetramerisation domain containing 1

Synonyms

4933402K10Rik

MMRRC Submission

041928-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4673 (G1)

Quality Score

126

Status

Not validated

Chromosome

Chromosomal Location

15101742-15284503 bp(-) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

T to A at 15196284 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000025992 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025992] [ENSMUST00000168989]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000025992

SMART Domains

Protein: ENSMUSP00000025992
Gene: ENSMUSG00000036225

Domain	Start	End	E-Value	Type
BTB	38	140	5e-7	SMART

Predicted Effect

unknown
Transcript: ENSMUST00000168989
AA Change: E113V

SMART Domains

Protein: ENSMUSP00000128070
Gene: ENSMUSG00000036225
AA Change: E113V

Domain	Start	End	E-Value	Type
low complexity region	14	44	N/A	INTRINSIC
low complexity region	52	62	N/A	INTRINSIC
low complexity region	70	101	N/A	INTRINSIC
low complexity region	124	145	N/A	INTRINSIC
low complexity region	217	234	N/A	INTRINSIC
Pfam:DUF3504	278	435	2.6e-32	PFAM
low complexity region	482	503	N/A	INTRINSIC
low complexity region	559	567	N/A	INTRINSIC
BTB	634	736	5e-7	SMART

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 95.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam32	T	C	8: 25,374,471 (GRCm39)	E507G	probably damaging	Het
Adam39	C	T	8: 41,277,768 (GRCm39)	T53I	probably benign	Het
Adam4	A	T	12: 81,468,535 (GRCm39)	S29T	possibly damaging	Het
Adamdec1	C	A	14: 68,815,353 (GRCm39)	E104*	probably null	Het
Alas1	G	T	9: 106,113,676 (GRCm39)	P523Q	probably damaging	Het
Aldh3a1	A	G	11: 61,104,320 (GRCm39)	D69G	probably benign	Het
Arhgap29	T	A	3: 121,808,620 (GRCm39)	V1266E	probably damaging	Het
Bcdin3d	T	C	15: 99,368,719 (GRCm39)	D160G	probably damaging	Het
Btaf1	T	A	19: 36,955,772 (GRCm39)	F569I	probably benign	Het
Cacna1b	A	G	2: 24,521,956 (GRCm39)	L1718S	probably damaging	Het
Casd1	A	G	6: 4,629,975 (GRCm39)	Y457C	probably damaging	Het
Creb3	T	C	4: 43,563,192 (GRCm39)	V97A	probably benign	Het
Cux2	G	T	5: 122,025,539 (GRCm39)	S43*	probably null	Het
Fhip1a	A	T	3: 85,638,020 (GRCm39)	V93D	probably damaging	Het
Fsbp	T	G	4: 11,579,841 (GRCm39)	N36K	probably benign	Het
Gm11565	A	G	11: 99,806,040 (GRCm39)	D144G	probably benign	Het
Gpn3	A	G	5: 122,511,981 (GRCm39)	Y19C	probably damaging	Het
Gstz1	A	T	12: 87,208,837 (GRCm39)	T148S	probably benign	Het
Gtf3c5	A	G	2: 28,462,236 (GRCm39)	I282T	probably benign	Het
Hspa2	T	A	12: 76,452,514 (GRCm39)	S403T	possibly damaging	Het
Il27	G	A	7: 126,190,251 (GRCm39)	T121I	possibly damaging	Het
Itpr2	A	G	6: 146,274,671 (GRCm39)	F837S	probably damaging	Het
Kynu	A	G	2: 43,569,815 (GRCm39)	T366A	probably damaging	Het
Lama5	G	A	2: 179,841,059 (GRCm39)	T507I	probably damaging	Het
Myh11	C	T	16: 14,087,105 (GRCm39)	V124M	probably damaging	Het
Myh14	T	A	7: 44,273,754 (GRCm39)	H1331L	probably damaging	Het
Myh2	T	A	11: 67,079,303 (GRCm39)	L957Q	probably damaging	Het
Myh4	T	C	11: 67,137,227 (GRCm39)	F483L	probably benign	Het
Nbeal1	A	C	1: 60,368,549 (GRCm39)	K2631N	probably damaging	Het
Ofcc1	G	A	13: 40,168,864 (GRCm39)	T841I	probably damaging	Het
Ogg1	T	C	6: 113,304,268 (GRCm39)	C28R	probably damaging	Het
Or13c7c	T	C	4: 43,836,430 (GRCm39)	H20R	probably benign	Het
Or5b24	G	A	19: 12,912,461 (GRCm39)	A120T	probably damaging	Het
Or5k17	C	T	16: 58,746,053 (GRCm39)	V294I	possibly damaging	Het
Or6e1	C	T	14: 54,519,789 (GRCm39)	A188T	possibly damaging	Het
Or7g35	A	G	9: 19,496,726 (GRCm39)	K298E	possibly damaging	Het
Parp6	G	C	9: 59,547,393 (GRCm39)	R460P	probably damaging	Het
Phf14	A	G	6: 11,992,056 (GRCm39)	H744R	probably damaging	Het
Pibf1	A	G	14: 99,370,787 (GRCm39)	N263S	possibly damaging	Het
Plcb4	A	G	2: 135,774,191 (GRCm39)	T158A	possibly damaging	Het
Plce1	T	C	19: 38,737,840 (GRCm39)	S1615P	possibly damaging	Het
Plxna3	T	G	X: 73,382,554 (GRCm39)		probably null	Het
Rad54b	T	A	4: 11,609,449 (GRCm39)	H633Q	probably benign	Het
Rgs22	T	A	15: 36,100,079 (GRCm39)	Y212F	probably benign	Het
Rnd3	G	A	2: 51,022,553 (GRCm39)	A163V	probably benign	Het
Rnf10	A	T	5: 115,389,148 (GRCm39)	V315E	probably damaging	Het
Robo2	C	T	16: 73,701,266 (GRCm39)		probably null	Het
Rp1l1	T	G	14: 64,268,719 (GRCm39)	V1435G	probably damaging	Het
Scaf8	T	A	17: 3,248,260 (GRCm39)	D1194E	probably benign	Het
Septin12	T	C	16: 4,809,807 (GRCm39)	T198A	probably damaging	Het
Shisa2	A	G	14: 59,867,629 (GRCm39)	T294A	probably damaging	Het
Spta1	A	G	1: 174,018,628 (GRCm39)		probably null	Het
Strbp	A	T	2: 37,535,691 (GRCm39)	S6T	probably damaging	Het
Syf2	A	G	4: 134,661,804 (GRCm39)	E56G	probably damaging	Het
Thap4	T	C	1: 93,642,588 (GRCm39)		probably benign	Het
Tnfaip3	T	C	10: 18,887,580 (GRCm39)		probably benign	Het
Tnxb	A	G	17: 34,891,514 (GRCm39)	E619G	probably damaging	Het
Tpr	G	A	1: 150,299,318 (GRCm39)	A1173T	probably benign	Het
Tspan3	G	A	9: 56,043,980 (GRCm39)	R240W	probably damaging	Het
Tut7	G	T	13: 59,944,659 (GRCm39)	T658K	probably damaging	Het
Ubr4	C	T	4: 139,138,027 (GRCm39)	S1128L	probably damaging	Het
Ucp1	T	C	8: 84,021,876 (GRCm39)	V236A	probably damaging	Het
Usp34	TCACCACCACCACCACCACCACCACCAC	TCACCACCACCACCACCACCACCAC	11: 23,314,480 (GRCm39)		probably benign	Het
Zfp940	T	C	7: 29,544,863 (GRCm39)	D348G	probably benign	Het
Zpld2	G	A	4: 133,927,658 (GRCm39)	A365V	probably benign	Het

Other mutations in Kctd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01318:Kctd1	APN	18	15,195,747 (GRCm39)	missense	possibly damaging	0.51
IGL01402:Kctd1	APN	18	15,102,610 (GRCm39)	missense	probably damaging	0.98
IGL01404:Kctd1	APN	18	15,102,610 (GRCm39)	missense	probably damaging	0.98
IGL01755:Kctd1	APN	18	15,195,694 (GRCm39)	missense	possibly damaging	0.86
IGL02606:Kctd1	APN	18	15,195,937 (GRCm39)	missense	possibly damaging	0.73
IGL02725:Kctd1	APN	18	15,102,667 (GRCm39)	missense	possibly damaging	0.67
IGL02946:Kctd1	APN	18	15,107,036 (GRCm39)	critical splice donor site	probably null
R0128:Kctd1	UTSW	18	15,107,237 (GRCm39)	missense	probably benign	0.00
R0598:Kctd1	UTSW	18	15,140,822 (GRCm39)	missense	probably damaging	1.00
R1398:Kctd1	UTSW	18	15,195,654 (GRCm39)	missense	possibly damaging	0.85
R1669:Kctd1	UTSW	18	15,195,517 (GRCm39)	missense	possibly damaging	0.71
R1701:Kctd1	UTSW	18	15,102,617 (GRCm39)	missense	possibly damaging	0.95
R1745:Kctd1	UTSW	18	15,196,263 (GRCm39)	intron	probably benign
R1779:Kctd1	UTSW	18	15,194,839 (GRCm39)	missense	probably benign	0.01
R2083:Kctd1	UTSW	18	15,107,112 (GRCm39)	missense	possibly damaging	0.89
R2389:Kctd1	UTSW	18	15,195,268 (GRCm39)	missense	possibly damaging	0.73
R3010:Kctd1	UTSW	18	15,107,143 (GRCm39)	missense	probably damaging	1.00
R4576:Kctd1	UTSW	18	15,140,757 (GRCm39)	missense	probably damaging	1.00
R4884:Kctd1	UTSW	18	15,107,311 (GRCm39)	missense	probably damaging	1.00
R4961:Kctd1	UTSW	18	15,195,580 (GRCm39)	missense	probably damaging	0.97
R5169:Kctd1	UTSW	18	15,195,822 (GRCm39)	missense	possibly damaging	0.72
R5398:Kctd1	UTSW	18	15,195,322 (GRCm39)	missense	possibly damaging	0.86
R5695:Kctd1	UTSW	18	15,196,573 (GRCm39)	intron	probably benign
R5893:Kctd1	UTSW	18	15,102,745 (GRCm39)	missense	possibly damaging	0.93
R6175:Kctd1	UTSW	18	15,102,688 (GRCm39)	nonsense	probably null
R6767:Kctd1	UTSW	18	15,195,232 (GRCm39)	missense	possibly damaging	0.53
R6852:Kctd1	UTSW	18	15,119,401 (GRCm39)	missense	possibly damaging	0.72
R6889:Kctd1	UTSW	18	15,107,045 (GRCm39)	missense	probably damaging	1.00
R7189:Kctd1	UTSW	18	15,195,700 (GRCm39)	missense	possibly damaging	0.71
R7228:Kctd1	UTSW	18	15,195,469 (GRCm39)	missense	possibly damaging	0.95
R7688:Kctd1	UTSW	18	15,107,255 (GRCm39)	missense	probably benign	0.03
R8085:Kctd1	UTSW	18	15,140,901 (GRCm39)	missense	possibly damaging	0.95
R8195:Kctd1	UTSW	18	15,196,300 (GRCm39)	missense	unknown
R8496:Kctd1	UTSW	18	15,107,228 (GRCm39)	missense	probably damaging	1.00
R8924:Kctd1	UTSW	18	15,102,745 (GRCm39)	missense	possibly damaging	0.93
R8978:Kctd1	UTSW	18	15,119,491 (GRCm39)	missense
R9094:Kctd1	UTSW	18	15,195,369 (GRCm39)	missense	possibly damaging	0.71
R9255:Kctd1	UTSW	18	15,194,853 (GRCm39)	missense	probably benign	0.00
R9629:Kctd1	UTSW	18	15,196,611 (GRCm39)	missense	unknown
R9680:Kctd1	UTSW	18	15,140,822 (GRCm39)	missense	probably damaging	1.00
Z1176:Kctd1	UTSW	18	15,196,182 (GRCm39)	missense	unknown

Predicted Primers

PCR Primer
(F):5'- TCAGGTACTCCCGGAAGATG -3'
(R):5'- CCGGTAGCTGAAGGTCATTAAACAC -3'

Sequencing Primer
(F):5'- TACTCCCGGAAGATGCGCAC -3'
(R):5'- TCAGCGCTGCGGTCCAATATAG -3'

Posted On

2015-10-08