Mutagenetix > Incidental Mutation

Incidental Mutation 'R4665:Snd1'

351828

Institutional Source

Beutler Lab

Gene Symbol

Snd1

Ensembl Gene

ENSMUSG00000001424

Gene Name

staphylococcal nuclease and tudor domain containing 1

Synonyms

Tudor-SN, p100 co-activator

MMRRC Submission

041923-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.926) question?

Stock #

R4665 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

28480332-28935161 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 28707053 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 455 (V455A)

Ref Sequence

ENSEMBL: ENSMUSP00000128737 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000001460] [ENSMUST00000164915] [ENSMUST00000167201] [ENSMUST00000171353]

AlphaFold

Q78PY7

Predicted Effect

probably damaging
Transcript: ENSMUST00000001460
AA Change: V455A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000001460
Gene: ENSMUSG00000001424
AA Change: V455A

Domain	Start	End	E-Value	Type
low complexity region	2	15	N/A	INTRINSIC
SNc	18	166	7.12e-54	SMART
SNc	193	328	8.37e-51	SMART
SNc	341	496	4.11e-59	SMART
SNc	525	660	3.82e-45	SMART
TUDOR	728	785	4.8e-19	SMART
Pfam:SNase	835	895	1.3e-7	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000163772

Predicted Effect

probably benign
Transcript: ENSMUST00000164915

SMART Domains

Protein: ENSMUSP00000127317
Gene: ENSMUSG00000001424

Domain	Start	End	E-Value	Type
low complexity region	2	15	N/A	INTRINSIC
SNc	18	142	1.56e-18	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000167201
AA Change: V455A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000128737
Gene: ENSMUSG00000001424
AA Change: V455A

Domain	Start	End	E-Value	Type
low complexity region	2	15	N/A	INTRINSIC
SNc	18	166	7.12e-54	SMART
SNc	193	328	8.37e-51	SMART
SNc	341	496	4.11e-59	SMART
SCOP:d1sty__	526	592	1e-4	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000169321

Predicted Effect

probably benign
Transcript: ENSMUST00000171353

SMART Domains

Protein: ENSMUSP00000129497
Gene: ENSMUSG00000049939

Domain	Start	End	E-Value	Type
low complexity region	29	39	N/A	INTRINSIC
transmembrane domain	104	126	N/A	INTRINSIC
low complexity region	152	163	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000171532

Meta Mutation Damage Score

0.5575

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.4%

Validation Efficiency

99% (89/90)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a transcriptional co-activator that interacts with the acidic domain of Epstein-Barr virus nuclear antigen 2 (EBNA 2), a transcriptional activator that is required for B-lymphocyte transformation. Other transcription factors that interact with this protein are signal transducers and activators of transcription, STATs. This protein is also thought to be essential for normal cell growth. A similar protein in mammals and other organisms is a component of the RNA-induced silencing complex (RISC). [provided by RefSeq, Jul 2016]

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aak1	T	A	6: 86,902,059 (GRCm39)	M76K	probably null	Het
Abcc4	A	G	14: 118,766,414 (GRCm39)	I886T	probably benign	Het
Adam6a	T	C	12: 113,507,992 (GRCm39)	Y122H	possibly damaging	Het
Adgre1	A	G	17: 57,787,947 (GRCm39)	T905A	probably benign	Het
Arap2	A	G	5: 62,827,312 (GRCm39)	F969L	possibly damaging	Het
Arhgef4	G	T	1: 34,845,113 (GRCm39)	G1439V	possibly damaging	Het
Atm	A	G	9: 53,375,529 (GRCm39)	W2097R	probably benign	Het
Atmin	A	G	8: 117,684,698 (GRCm39)	D786G	probably damaging	Het
AU016765	T	A	17: 64,826,916 (GRCm39)		noncoding transcript	Het
Capn1	A	T	19: 6,061,045 (GRCm39)	N253K	probably benign	Het
Cdc42bpa	A	G	1: 179,972,130 (GRCm39)	T527A	probably damaging	Het
Chmp7	A	T	14: 69,958,404 (GRCm39)	V255D	probably damaging	Het
Cldn12	A	G	5: 5,558,385 (GRCm39)	F14S	probably damaging	Het
Cpsf2	T	C	12: 101,949,466 (GRCm39)	S61P	probably damaging	Het
Cpvl	C	T	6: 53,908,918 (GRCm39)	E282K	probably benign	Het
Crygn	T	A	5: 24,956,019 (GRCm39)		probably benign	Het
Csde1	C	T	3: 102,954,388 (GRCm39)	T386M	probably damaging	Het
Cux1	G	A	5: 136,315,653 (GRCm39)	T1129I	probably damaging	Het
Dcaf10	G	A	4: 45,372,769 (GRCm39)	R394Q	possibly damaging	Het
Dhx16	T	C	17: 36,190,835 (GRCm39)	V11A	probably damaging	Het
Dnah10	T	C	5: 124,905,536 (GRCm39)	M4060T	possibly damaging	Het
Duox1	C	T	2: 122,149,956 (GRCm39)	P116S	probably benign	Het
Eif5b	A	G	1: 38,084,793 (GRCm39)	E880G	probably damaging	Het
Eml6	A	T	11: 29,769,007 (GRCm39)	Y67*	probably null	Het
Faim2	C	A	15: 99,422,581 (GRCm39)		probably null	Het
Faim2	T	G	15: 99,422,582 (GRCm39)	S72R	probably benign	Het
Fanca	T	C	8: 123,995,711 (GRCm39)	T1364A	probably damaging	Het
Fhip1a	A	T	3: 85,637,988 (GRCm39)	W104R	probably damaging	Het
Gak	A	G	5: 108,730,826 (GRCm39)	I860T	probably benign	Het
Garem2	C	A	5: 30,319,665 (GRCm39)	R376S	probably damaging	Het
Gdf2	A	G	14: 33,667,408 (GRCm39)	T377A	probably damaging	Het
Gm2431	A	T	7: 141,811,440 (GRCm39)	C155S	unknown	Het
Gm5814	A	G	17: 47,721,288 (GRCm39)	M1V	probably null	Het
Gm5901	C	G	7: 105,026,438 (GRCm39)	Q69E	possibly damaging	Het
Gm9945	A	G	11: 53,371,202 (GRCm39)		probably benign	Het
Gmps	T	C	3: 63,908,956 (GRCm39)	V486A	probably benign	Het
Gtf2ird1	T	A	5: 134,412,756 (GRCm39)	E55V	probably damaging	Het
Hoxa11	T	A	6: 52,220,483 (GRCm39)	N267Y	probably damaging	Het
Ifngr2	C	A	16: 91,356,926 (GRCm39)	H153Q	possibly damaging	Het
Ift172	G	T	5: 31,442,598 (GRCm39)	Q190K	possibly damaging	Het
Iqch	A	G	9: 63,352,853 (GRCm39)	V899A	probably damaging	Het
Lactb2	T	C	1: 13,717,624 (GRCm39)	E133G	probably damaging	Het
Lig3	G	A	11: 82,691,076 (GRCm39)	V110M	probably damaging	Het
Lin54	C	A	5: 100,600,943 (GRCm39)	Q262H	possibly damaging	Het
Lingo3	G	A	10: 80,671,372 (GRCm39)	T186I	probably damaging	Het
Lrrc7	GAAGTTGTTTGGAGATTCTTATCTTA	GA	3: 158,024,045 (GRCm39)		probably benign	Het
Ly86	T	A	13: 37,559,010 (GRCm39)	F70I	probably damaging	Het
Mospd2	A	T	X: 163,730,329 (GRCm39)	S301T	probably benign	Het
Mroh2a	A	C	1: 88,169,340 (GRCm39)	I672L	probably benign	Het
Myo15a	A	T	11: 60,395,705 (GRCm39)		probably null	Het
Nme8	C	G	13: 19,858,605 (GRCm39)	A78P	probably damaging	Het
Obscn	C	T	11: 59,015,578 (GRCm39)	V965M	probably damaging	Het
Or10ag57	T	A	2: 87,218,220 (GRCm39)	I57K	probably damaging	Het
Parn	T	C	16: 13,358,967 (GRCm39)	K592E	probably benign	Het
Pax6	C	A	2: 105,514,343 (GRCm39)		probably benign	Het
Pdcd6	A	T	13: 74,465,325 (GRCm39)	M1K	probably null	Het
Pex11b	T	C	3: 96,551,151 (GRCm39)	L198P	possibly damaging	Het
Phldb3	C	T	7: 24,310,852 (GRCm39)	A28V	probably benign	Het
Pkn3	C	A	2: 29,975,469 (GRCm39)		probably benign	Het
Pknox1	T	C	17: 31,814,300 (GRCm39)		probably null	Het
Ptprg	A	C	14: 12,215,288 (GRCm38)	I1092L	possibly damaging	Het
Pxylp1	A	C	9: 96,707,338 (GRCm39)	I281M	probably damaging	Het
Ramac	C	T	7: 81,418,178 (GRCm39)	R78W	probably damaging	Het
Retreg2	G	T	1: 75,121,310 (GRCm39)	L195F	probably damaging	Het
Rgs20	G	C	1: 5,091,231 (GRCm39)	F66L	probably benign	Het
Ripk4	C	T	16: 97,556,273 (GRCm39)	V157I	probably damaging	Het
Ryr2	T	C	13: 11,765,571 (GRCm39)		probably null	Het
Scaper	A	T	9: 55,819,339 (GRCm39)	S125R	probably damaging	Het
Sec16a	C	T	2: 26,302,970 (GRCm39)		probably benign	Het
Slc35f6	T	C	5: 30,812,957 (GRCm39)	L37P	probably damaging	Het
Slc6a12	T	A	6: 121,335,972 (GRCm39)		probably benign	Het
Slc9a5	A	G	8: 106,094,760 (GRCm39)	K784E	probably damaging	Het
Ssbp2	A	T	13: 91,687,454 (GRCm39)	I46L	possibly damaging	Het
Stil	A	G	4: 114,898,841 (GRCm39)	D1157G	probably benign	Het
Tax1bp1	T	A	6: 52,714,116 (GRCm39)	C271S	probably benign	Het
Tdpoz6	G	A	3: 93,599,776 (GRCm39)	H198Y	probably damaging	Het
Tdrd6	T	A	17: 43,935,007 (GRCm39)	M2014L	probably benign	Het
Thsd7a	T	A	6: 12,504,012 (GRCm39)	I381F	possibly damaging	Het
Thsd7a	T	A	6: 12,337,313 (GRCm39)	T1235S	possibly damaging	Het
Tmprss11d	T	C	5: 86,457,260 (GRCm39)	D133G	probably damaging	Het
Tpr	C	T	1: 150,320,150 (GRCm39)	R2233W	probably damaging	Het
Ugt1a1	CAGAGAGAGAGAGA	CAGAGAGAGAGA	1: 88,139,706 (GRCm39)		probably benign	Het
Vgll1	A	G	X: 56,137,792 (GRCm39)	R54G	possibly damaging	Het
Wdr72	A	G	9: 74,117,306 (GRCm39)	T673A	probably benign	Het
Zfp169	C	T	13: 48,644,339 (GRCm39)		probably benign	Het
Zfp319	G	A	8: 96,052,201 (GRCm39)		probably benign	Het

Other mutations in Snd1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00933:Snd1	APN	6	28,512,985 (GRCm39)	critical splice donor site	probably null
IGL00940:Snd1	APN	6	28,745,174 (GRCm39)	intron	probably benign
IGL01340:Snd1	APN	6	28,883,368 (GRCm39)	missense	probably benign
IGL01892:Snd1	APN	6	28,888,123 (GRCm39)	critical splice donor site	probably null
IGL02063:Snd1	APN	6	28,526,220 (GRCm39)	unclassified	probably benign
IGL02134:Snd1	APN	6	28,880,278 (GRCm39)	missense	possibly damaging	0.81
IGL02366:Snd1	APN	6	28,707,149 (GRCm39)	intron	probably benign
PIT4677001:Snd1	UTSW	6	28,880,295 (GRCm39)	missense	probably benign	0.01
R0039:Snd1	UTSW	6	28,745,209 (GRCm39)	missense	probably damaging	1.00
R0053:Snd1	UTSW	6	28,745,334 (GRCm39)	intron	probably benign
R0053:Snd1	UTSW	6	28,745,334 (GRCm39)	intron	probably benign
R0463:Snd1	UTSW	6	28,724,955 (GRCm39)	missense	probably benign	0.00
R0576:Snd1	UTSW	6	28,886,576 (GRCm39)	missense	probably benign	0.31
R0709:Snd1	UTSW	6	28,545,469 (GRCm39)	splice site	probably benign
R0959:Snd1	UTSW	6	28,884,970 (GRCm39)	missense	probably benign	0.01
R1698:Snd1	UTSW	6	28,888,252 (GRCm39)	nonsense	probably null
R1853:Snd1	UTSW	6	28,545,563 (GRCm39)	missense	probably damaging	1.00
R2059:Snd1	UTSW	6	28,745,206 (GRCm39)	missense	probably damaging	1.00
R2497:Snd1	UTSW	6	28,888,078 (GRCm39)	missense	probably benign
R3832:Snd1	UTSW	6	28,531,403 (GRCm39)	splice site	probably benign
R3833:Snd1	UTSW	6	28,531,403 (GRCm39)	splice site	probably benign
R4643:Snd1	UTSW	6	28,880,248 (GRCm39)	missense	probably benign	0.00
R4843:Snd1	UTSW	6	28,668,642 (GRCm39)	missense	probably damaging	1.00
R4884:Snd1	UTSW	6	28,526,911 (GRCm39)	missense	possibly damaging	0.94
R4959:Snd1	UTSW	6	28,884,250 (GRCm39)	nonsense	probably null
R4973:Snd1	UTSW	6	28,884,250 (GRCm39)	nonsense	probably null
R5065:Snd1	UTSW	6	28,888,239 (GRCm39)	missense	probably damaging	1.00
R5066:Snd1	UTSW	6	28,888,239 (GRCm39)	missense	probably damaging	1.00
R5067:Snd1	UTSW	6	28,888,239 (GRCm39)	missense	probably damaging	1.00
R5131:Snd1	UTSW	6	28,885,049 (GRCm39)	missense	probably damaging	0.99
R5172:Snd1	UTSW	6	28,886,615 (GRCm39)	missense	possibly damaging	0.91
R5239:Snd1	UTSW	6	28,545,524 (GRCm39)	missense	probably damaging	1.00
R5313:Snd1	UTSW	6	28,668,600 (GRCm39)	missense	probably benign	0.15
R5395:Snd1	UTSW	6	28,526,183 (GRCm39)	missense	probably damaging	0.99
R5938:Snd1	UTSW	6	28,874,858 (GRCm39)	critical splice acceptor site	probably null
R6019:Snd1	UTSW	6	28,880,233 (GRCm39)	missense	probably benign	0.00
R6248:Snd1	UTSW	6	28,520,234 (GRCm39)	nonsense	probably null
R6337:Snd1	UTSW	6	28,888,288 (GRCm39)	missense	probably damaging	1.00
R6810:Snd1	UTSW	6	28,668,609 (GRCm39)	missense	probably benign	0.23
R6932:Snd1	UTSW	6	28,626,100 (GRCm39)	missense	probably benign	0.42
R7469:Snd1	UTSW	6	28,626,126 (GRCm39)	missense	probably damaging	1.00
R7485:Snd1	UTSW	6	28,531,449 (GRCm39)	missense	probably benign	0.14
R7571:Snd1	UTSW	6	28,526,202 (GRCm39)	missense	possibly damaging	0.81
R7866:Snd1	UTSW	6	28,527,724 (GRCm39)	missense	probably damaging	1.00
R8178:Snd1	UTSW	6	28,874,975 (GRCm39)	missense	possibly damaging	0.85
R8208:Snd1	UTSW	6	28,526,054 (GRCm39)	missense	possibly damaging	0.86
R8526:Snd1	UTSW	6	28,745,253 (GRCm39)	missense	probably benign	0.00
R8848:Snd1	UTSW	6	28,874,962 (GRCm39)	missense	possibly damaging	0.72
R8854:Snd1	UTSW	6	28,526,968 (GRCm39)	missense	probably benign	0.02
R9310:Snd1	UTSW	6	28,795,936 (GRCm39)	missense	probably null	1.00
R9326:Snd1	UTSW	6	28,795,842 (GRCm39)	nonsense	probably null
R9348:Snd1	UTSW	6	28,745,206 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AATAGCCCGGCCTAATGTGG -3'
(R):5'- GGATGTCCACTGGTGAAAGC -3'

Sequencing Primer
(F):5'- CCTAATGTGGGCTTCTTACAGATAG -3'
(R):5'- TGTCCACTGGTGAAAGCTGAAG -3'

Posted On

2015-10-08