Mutagenetix > Incidental Mutation

Incidental Mutation 'R4663:Snx7'

352990

Institutional Source

Beutler Lab

Gene Symbol

Snx7

Ensembl Gene

ENSMUSG00000028007

Gene Name

sorting nexin 7

Synonyms

MMRRC Submission

041921-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.107) question?

Stock #

R4663 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

117575296-117662585 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 117594528 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 408 (T408A)

Ref Sequence

ENSEMBL: ENSMUSP00000029639 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029639] [ENSMUST00000167877] [ENSMUST00000198499]

AlphaFold

Q9CY18

Predicted Effect

probably benign
Transcript: ENSMUST00000029639
AA Change: T408A

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000029639
Gene: ENSMUSG00000028007
AA Change: T408A

Domain	Start	End	E-Value	Type
low complexity region	38	51	N/A	INTRINSIC
PX	85	205	1.55e-22	SMART
coiled coil region	362	391	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000167877
AA Change: T325A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000125804
Gene: ENSMUSG00000028007
AA Change: T325A

Domain	Start	End	E-Value	Type
low complexity region	10	23	N/A	INTRINSIC
PX	57	196	3.62e-2	SMART
coiled coil region	279	308	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000169812

SMART Domains

Protein: ENSMUSP00000128007
Gene: ENSMUSG00000028007

Domain	Start	End	E-Value	Type
low complexity region	30	43	N/A	INTRINSIC
PX	77	197	1.55e-22	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000198499
AA Change: T350A

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000143230
Gene: ENSMUSG00000028007
AA Change: T350A

Domain	Start	End	E-Value	Type
PX	27	147	1.55e-22	SMART
coiled coil region	304	333	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.1%
20x: 94.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the sorting nexin family. Members of this family contain a phox (PX) domain, which is a phosphoinositide binding domain, and are involved in intracellular trafficking. This protein does not contain a coiled coil region like some family members, and its exact function is unknown. Alternative splicing results in multiple transcript variants. A related pseudogene has been identified on chromosome 11. [provided by RefSeq, Jun 2010]

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aqr	A	T	2: 113,992,147 (GRCm39)	Y76*	probably null	Het
Armc5	C	A	7: 127,837,717 (GRCm39)	A140E	probably benign	Het
Auts2	T	C	5: 131,468,476 (GRCm39)	H947R	probably damaging	Het
Bag2	T	C	1: 33,786,074 (GRCm39)	T83A	probably damaging	Het
Bag4	C	T	8: 26,259,516 (GRCm39)	A228T	probably benign	Het
Bean1	A	G	8: 104,937,799 (GRCm39)	Y126C	probably damaging	Het
Cars1	T	C	7: 143,129,697 (GRCm39)	E330G	probably damaging	Het
Ccdc40	A	G	11: 119,122,332 (GRCm39)	I45V	probably benign	Het
Cd320	G	A	17: 34,067,152 (GRCm39)	G214R	probably null	Het
Ckm	G	A	7: 19,153,419 (GRCm39)	V237M	probably damaging	Het
Cplane1	T	C	15: 8,247,939 (GRCm39)	V1496A	probably benign	Het
Cspg4	T	C	9: 56,793,960 (GRCm39)	V565A	possibly damaging	Het
Dnaaf10	T	C	11: 17,182,853 (GRCm39)	V338A	probably benign	Het
Eddm13	T	G	7: 6,261,624 (GRCm39)	I35S	possibly damaging	Het
Ephb6	A	G	6: 41,594,799 (GRCm39)	Y638C	probably damaging	Het
Fat2	G	C	11: 55,187,039 (GRCm39)	S1269*	probably null	Het
Fbxo3	T	C	2: 103,883,820 (GRCm39)	V348A	probably damaging	Het
Gas6	G	A	8: 13,520,254 (GRCm39)	P478L	probably damaging	Het
Herc1	T	C	9: 66,340,660 (GRCm39)	S1670P	probably damaging	Het
Hnrnpk	C	A	13: 58,542,331 (GRCm39)	R281L	probably damaging	Het
Ifih1	C	A	2: 62,439,563 (GRCm39)	C488F	probably benign	Het
Ift172	T	C	5: 31,441,559 (GRCm39)	K192E	probably benign	Het
Ighv5-9	T	A	12: 113,625,440 (GRCm39)	Q101L	probably benign	Het
Igkv3-2	G	T	6: 70,675,863 (GRCm39)	M57I	probably benign	Het
Insyn2a	A	T	7: 134,500,877 (GRCm39)	Y409*	probably null	Het
Itpr2	A	G	6: 146,274,671 (GRCm39)	F837S	probably damaging	Het
L3mbtl3	T	C	10: 26,213,715 (GRCm39)	Y237C	unknown	Het
Lats1	G	A	10: 7,588,347 (GRCm39)	C988Y	probably damaging	Het
Lgals3	T	A	14: 47,619,079 (GRCm39)		probably null	Het
Lrrc3b	G	T	14: 15,358,220 (GRCm38)	H129N	probably benign	Het
Lrriq1	T	C	10: 102,899,273 (GRCm39)	H1656R	possibly damaging	Het
Lypd6	T	G	2: 50,063,623 (GRCm39)	Y43*	probably null	Het
Mettl25b	A	G	3: 87,835,055 (GRCm39)	S82P	probably damaging	Het
Mical2	A	G	7: 111,927,884 (GRCm39)	D674G	possibly damaging	Het
Msi1	G	A	5: 115,588,334 (GRCm39)	R284Q	probably damaging	Het
Mybpc2	T	C	7: 44,155,066 (GRCm39)	E947G	probably damaging	Het
Nat14	T	A	7: 4,927,446 (GRCm39)	L206Q	probably damaging	Het
Nup88	A	T	11: 70,856,672 (GRCm39)		probably null	Het
Or11g27	A	T	14: 50,771,061 (GRCm39)	Y64F	probably damaging	Het
Or4k15	A	G	14: 50,364,939 (GRCm39)	R302G	probably benign	Het
Or8g19	A	T	9: 39,056,145 (GRCm39)	I250F	probably damaging	Het
Pdcl	T	C	2: 37,245,778 (GRCm39)	E75G	probably damaging	Het
Phf14	A	G	6: 11,953,421 (GRCm39)	I387V	possibly damaging	Het
Phf3	G	A	1: 30,860,296 (GRCm39)	R845W	probably damaging	Het
Pm20d1	T	C	1: 131,726,340 (GRCm39)	I59T	probably damaging	Het
Prkd1	C	T	12: 50,466,631 (GRCm39)		probably null	Het
Psmb2	T	C	4: 126,571,558 (GRCm39)	L4P	probably damaging	Het
Pttg1	T	A	11: 43,315,677 (GRCm39)	K46*	probably null	Het
Ryr2	T	C	13: 11,764,395 (GRCm39)	H1401R	possibly damaging	Het
Septin4	T	A	11: 87,458,429 (GRCm39)	Y268N	probably damaging	Het
Sh3d19	G	A	3: 86,030,570 (GRCm39)	D696N	probably benign	Het
Slc16a2	T	C	X: 102,751,585 (GRCm39)	T274A	probably benign	Het
Slc26a6	G	A	9: 108,735,106 (GRCm39)	A335T	probably damaging	Het
Slc49a3	T	C	5: 108,590,011 (GRCm39)	M464V	probably benign	Het
Slc6a5	C	A	7: 49,588,146 (GRCm39)	Y493*	probably null	Het
Slf1	A	T	13: 77,274,723 (GRCm39)	S37R	probably damaging	Het
Smoc1	G	A	12: 81,214,376 (GRCm39)	G264S	probably damaging	Het
Snapc4	T	C	2: 26,264,193 (GRCm39)	E280G	possibly damaging	Het
Snx25	G	A	8: 46,488,616 (GRCm39)	T913M	probably damaging	Het
Spdya	T	A	17: 71,885,339 (GRCm39)	S264R	probably benign	Het
Spg11	A	T	2: 121,928,580 (GRCm39)		probably null	Het
Suz12	T	A	11: 79,904,350 (GRCm39)	L230Q	probably damaging	Het
Szt2	A	G	4: 118,234,881 (GRCm39)		probably benign	Het
Tenm3	C	A	8: 48,689,005 (GRCm39)	R2194L	probably damaging	Het
Tmed8	T	A	12: 87,221,005 (GRCm39)	I194F	probably damaging	Het
Tmem79	T	A	3: 88,240,751 (GRCm39)	T66S	probably damaging	Het
Trappc1	T	A	11: 69,216,337 (GRCm39)	S118T	probably benign	Het
Ttn	C	T	2: 76,569,225 (GRCm39)	V27223I	probably benign	Het
Ttn	T	C	2: 76,606,839 (GRCm39)	T18024A	probably damaging	Het
Vmn2r15	C	T	5: 109,441,940 (GRCm39)	M164I	probably benign	Het
Vmn2r53	T	A	7: 12,334,901 (GRCm39)	Y253F	probably benign	Het
Zfand6	C	T	7: 84,267,093 (GRCm39)	R163H	probably benign	Het

Other mutations in Snx7

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02593:Snx7	APN	3	117,633,609 (GRCm39)	missense	probably damaging	1.00
IGL02859:Snx7	APN	3	117,623,320 (GRCm39)	splice site	probably benign
IGL03260:Snx7	APN	3	117,575,942 (GRCm39)	utr 3 prime	probably benign
IGL03357:Snx7	APN	3	117,632,524 (GRCm39)	missense	probably damaging	1.00
P0026:Snx7	UTSW	3	117,633,672 (GRCm39)	missense	probably damaging	1.00
R0620:Snx7	UTSW	3	117,640,324 (GRCm39)	missense	probably damaging	0.96
R0731:Snx7	UTSW	3	117,623,320 (GRCm39)	splice site	probably benign
R1613:Snx7	UTSW	3	117,623,222 (GRCm39)	splice site	probably benign
R1621:Snx7	UTSW	3	117,630,805 (GRCm39)	missense	possibly damaging	0.89
R1911:Snx7	UTSW	3	117,623,317 (GRCm39)	splice site	probably null
R1912:Snx7	UTSW	3	117,623,317 (GRCm39)	splice site	probably null
R3788:Snx7	UTSW	3	117,632,639 (GRCm39)	splice site	probably benign
R5182:Snx7	UTSW	3	117,626,506 (GRCm39)	missense	probably damaging	1.00
R5681:Snx7	UTSW	3	117,640,272 (GRCm39)	missense	probably benign	0.10
R6397:Snx7	UTSW	3	117,640,272 (GRCm39)	missense	probably benign	0.10
R6715:Snx7	UTSW	3	117,575,985 (GRCm39)	missense	possibly damaging	0.47
R6901:Snx7	UTSW	3	117,623,285 (GRCm39)	nonsense	probably null
R6996:Snx7	UTSW	3	117,640,281 (GRCm39)	missense	possibly damaging	0.82
R7049:Snx7	UTSW	3	117,633,680 (GRCm39)	missense	possibly damaging	0.57
R7372:Snx7	UTSW	3	117,576,000 (GRCm39)	missense	probably damaging	1.00
R7429:Snx7	UTSW	3	117,630,861 (GRCm39)	missense	probably benign	0.00
R7741:Snx7	UTSW	3	117,632,488 (GRCm39)	missense	probably damaging	1.00
R8025:Snx7	UTSW	3	117,626,526 (GRCm39)	missense	probably benign
R8098:Snx7	UTSW	3	117,632,583 (GRCm39)	missense	probably benign	0.00
R8125:Snx7	UTSW	3	117,630,894 (GRCm39)	missense	probably damaging	0.96
R9400:Snx7	UTSW	3	117,630,863 (GRCm39)	missense	probably benign	0.04
R9501:Snx7	UTSW	3	117,632,611 (GRCm39)	missense	possibly damaging	0.65

Predicted Primers

PCR Primer
(F):5'- GGAACCACACCAGAATGGAGTC -3'
(R):5'- CTGACTTGCACACCGGAAAC -3'

Sequencing Primer
(F):5'- GTCACCAAGGAGGCTATGACTTC -3'
(R):5'- TGGACTCAATGAATCCTCCG -3'

Posted On

2015-10-08