Incidental Mutation 'R0206:Ddt'
ID35472
Institutional Source Beutler Lab
Gene Symbol Ddt
Ensembl Gene ENSMUSG00000001666
Gene NameD-dopachrome tautomerase
Synonyms
MMRRC Submission 038459-MU
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.042) question?
Stock #R0206 (G1)
Quality Score90
Status Validated
Chromosome10
Chromosomal Location75771230-75773414 bp(-) (GRCm38)
Type of Mutationstart codon destroyed
DNA Base Change (assembly) A to G at 75772885 bp
ZygosityHeterozygous
Amino Acid Change Methionine to Threonine at position 1 (M1T)
Ref Sequence ENSEMBL: ENSMUSP00000134561 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000001715] [ENSMUST00000001716] [ENSMUST00000172820] [ENSMUST00000173537] [ENSMUST00000174187]
Predicted Effect probably benign
Transcript: ENSMUST00000001715
SMART Domains Protein: ENSMUSP00000001715
Gene: ENSMUSG00000001665

DomainStartEndE-ValueType
Pfam:GST_N 1 76 2.2e-13 PFAM
Pfam:GST_N_3 5 82 2.4e-13 PFAM
Pfam:GST_N_2 11 77 6.2e-10 PFAM
Pfam:GST_C 111 201 5e-9 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000001716
AA Change: M46T

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
SMART Domains Protein: ENSMUSP00000001716
Gene: ENSMUSG00000001666
AA Change: M46T

DomainStartEndE-ValueType
Pfam:MIF 2 116 8.5e-55 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000133869
SMART Domains Protein: ENSMUSP00000134134
Gene: ENSMUSG00000001665

DomainStartEndE-ValueType
PDB:2C3T|D 2 100 3e-52 PDB
SCOP:d1ljra1 6 107 4e-14 SMART
low complexity region 118 134 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000172820
AA Change: M1T

PolyPhen 2 Score 0.174 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000134561
Gene: ENSMUSG00000001666
AA Change: M1T

DomainStartEndE-ValueType
Pfam:MIF 1 71 3.3e-32 PFAM
Predicted Effect unknown
Transcript: ENSMUST00000173512
AA Change: M184T
SMART Domains Protein: ENSMUSP00000134112
Gene: ENSMUSG00000092360
AA Change: M184T

DomainStartEndE-ValueType
Pfam:GST_N 2 75 3.2e-13 PFAM
Pfam:GST_N_3 4 81 2.6e-13 PFAM
Pfam:GST_N_2 10 76 6.7e-10 PFAM
Pfam:MIF 159 252 8.5e-35 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000173537
SMART Domains Protein: ENSMUSP00000133498
Gene: ENSMUSG00000001665

DomainStartEndE-ValueType
Pfam:GST_N 3 76 5e-12 PFAM
Pfam:GST_N_3 5 82 1.2e-13 PFAM
Pfam:GST_N_2 11 77 6.1e-12 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000174187
SMART Domains Protein: ENSMUSP00000133576
Gene: ENSMUSG00000001665

DomainStartEndE-ValueType
PDB:2C3T|D 1 38 7e-16 PDB
SCOP:d1ljra2 1 38 6e-5 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000174649
Meta Mutation Damage Score 0.634 question?
Coding Region Coverage
  • 1x: 98.2%
  • 3x: 97.1%
  • 10x: 94.6%
  • 20x: 89.0%
Validation Efficiency 99% (83/84)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] D-dopachrome tautomerase converts D-dopachrome into 5,6-dihydroxyindole. The DDT gene is related to the migration inhibitory factor (MIF) in terms of sequence, enzyme activity, and gene structure. DDT and MIF are closely linked on chromosome 22. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 76 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1300017J02Rik A G 9: 103,282,662 C5R probably damaging Het
4930430F08Rik T A 10: 100,586,194 K69* probably null Het
A530064D06Rik G A 17: 48,163,318 T165I probably benign Het
A830010M20Rik A G 5: 107,505,040 T304A probably benign Het
Acsl5 A G 19: 55,280,569 K221E probably benign Het
Adam26a A C 8: 43,570,418 F12V possibly damaging Het
Adgrb2 T C 4: 129,992,559 L164P probably damaging Het
Aldh1l1 T C 6: 90,569,866 F384L possibly damaging Het
Arhgef5 A G 6: 43,273,341 E342G probably damaging Het
C130079G13Rik C T 3: 59,932,689 R61C probably damaging Het
Cacna1b A G 2: 24,607,480 S2140P probably damaging Het
Camsap2 G C 1: 136,281,000 P918R probably damaging Het
Cdca3 C T 6: 124,832,551 probably benign Het
Cenpj G T 14: 56,563,970 A182E probably benign Het
Cit A T 5: 115,994,030 N1782Y possibly damaging Het
Cmya5 A G 13: 93,095,557 S1008P probably damaging Het
Csgalnact2 T G 6: 118,114,386 Q197P probably benign Het
D630045J12Rik A G 6: 38,139,450 M1745T probably damaging Het
Dnah11 A C 12: 118,043,774 N2156K probably damaging Het
Dock3 G T 9: 106,996,996 Y425* probably null Het
Eng A T 2: 32,678,993 T511S probably benign Het
Fam192a A G 8: 94,588,011 F73S probably damaging Het
Gabra6 C T 11: 42,317,079 W188* probably null Het
Gnptab A T 10: 88,439,510 H1111L probably damaging Het
H2-M10.4 A G 17: 36,460,483 W268R probably damaging Het
Hrct1 C A 4: 43,727,384 T8K possibly damaging Het
Il2ra T C 2: 11,682,017 probably benign Het
Inpp5k T C 11: 75,631,143 I15T probably benign Het
Ipcef1 A G 10: 6,920,062 S113P probably damaging Het
Kctd8 A T 5: 69,341,165 V46E probably damaging Het
Klk1b9 T A 7: 43,979,430 N119K possibly damaging Het
Krtap9-3 C A 11: 99,597,837 C73F probably damaging Het
Loxhd1 T A 18: 77,404,866 F1334L possibly damaging Het
Me3 A T 7: 89,849,660 T483S probably benign Het
Med1 A G 11: 98,155,689 probably benign Het
Med13 A G 11: 86,300,856 probably benign Het
Mvk C T 5: 114,458,974 T334M probably damaging Het
Mxra8 T A 4: 155,842,596 I329N probably damaging Het
Mybphl T C 3: 108,375,415 V207A probably damaging Het
Myom1 T C 17: 71,037,297 S266P probably damaging Het
Nr2f2 G C 7: 70,360,175 P52R probably damaging Het
Olfr1032 T C 2: 86,008,292 I172T probably damaging Het
Olfr1458 G A 19: 13,103,278 R3C possibly damaging Het
Olfr308 T C 7: 86,321,646 Y102C probably benign Het
Olfr412 A T 11: 74,365,142 I158F probably benign Het
Olfr690 A T 7: 105,329,883 M103K possibly damaging Het
Olfr693 A G 7: 106,677,574 V304A probably benign Het
Pcdhb18 T C 18: 37,490,187 I190T possibly damaging Het
Pgbd1 A C 13: 21,434,481 L2R probably damaging Het
Pkp4 A G 2: 59,266,436 I61V probably damaging Het
Pold4 T G 19: 4,232,539 Y58* probably null Het
Pomgnt1 T C 4: 116,158,560 probably null Het
Prex2 T A 1: 11,285,144 D1556E probably damaging Het
Psmd1 T C 1: 86,133,741 V891A possibly damaging Het
Rmdn2 T A 17: 79,650,287 probably benign Het
Ryr2 A G 13: 11,676,251 probably benign Het
Scgb2b27 C A 7: 34,012,137 E96* probably null Het
Sec16b G T 1: 157,552,935 G359* probably null Het
Slc1a3 A G 15: 8,708,556 probably benign Het
Slc28a1 A T 7: 81,117,706 probably benign Het
Slc35d1 T C 4: 103,208,154 T177A probably damaging Het
Snx33 G A 9: 56,926,224 S187L probably damaging Het
Spg11 C T 2: 122,055,696 probably null Het
Spint1 T C 2: 119,248,345 probably benign Het
Spta1 A G 1: 174,192,960 H545R probably damaging Het
Tinag A G 9: 76,999,852 I367T probably damaging Het
Tln1 C T 4: 43,549,151 V644M probably damaging Het
Tnfrsf21 C T 17: 43,038,213 H239Y probably benign Het
Ube4b T C 4: 149,398,637 H58R probably benign Het
Ush2a A C 1: 188,531,761 I1612L probably damaging Het
Usp28 A G 9: 49,028,269 Y275C probably damaging Het
Vmn2r6 T C 3: 64,539,912 T578A probably benign Het
Vps13c A G 9: 67,939,162 probably benign Het
Vwf T C 6: 125,637,456 F1100S probably damaging Het
Zfp318 G T 17: 46,399,019 R556L probably benign Het
Zkscan1 T A 5: 138,101,186 C391S probably damaging Het
Other mutations in Ddt
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0854:Ddt UTSW 10 75771495 missense probably benign 0.02
R1853:Ddt UTSW 10 75773304 missense possibly damaging 0.79
R3107:Ddt UTSW 10 75772763 missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- AAATACGTTCCCTCACTGGCCCTG -3'
(R):5'- AGTTACCGTTTGGCGATCCCAC -3'

Sequencing Primer
(F):5'- ACTGGCCCTGCATACCG -3'
(R):5'- GCTAACATGCCATTCGTTGAG -3'
Posted On2013-05-09