Mutagenetix > Incidental Mutation

Incidental Mutation 'R4690:Adam28'

354871

Institutional Source

Beutler Lab

Gene Symbol

Adam28

Ensembl Gene

ENSMUSG00000014725

Gene Name

a disintegrin and metallopeptidase domain 28

Synonyms

MDC-L, D430033C21Rik, Dtgn1, C130072N01Rik

MMRRC Submission

041941-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.186) question?

Stock #

R4690 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

68843476-68893291 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 68879497 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Lysine at position 184 (Q184K)

Ref Sequence

ENSEMBL: ENSMUSP00000153354 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022642] [ENSMUST00000111072] [ENSMUST00000224039]

AlphaFold

Q9JLN6

Predicted Effect

probably benign
Transcript: ENSMUST00000022642
AA Change: Q184K

PolyPhen 2 Score 0.015 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000022642
Gene: ENSMUSG00000014725
AA Change: Q184K

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
Pfam:Pep_M12B_propep	31	158	5.5e-34	PFAM
Pfam:Reprolysin_4	205	387	1.5e-14	PFAM
Pfam:Reprolysin_5	205	388	9.7e-19	PFAM
Pfam:Reprolysin	206	402	5.6e-70	PFAM
Pfam:Reprolysin_2	226	392	1e-16	PFAM
Pfam:Reprolysin_3	230	353	1.2e-21	PFAM
DISIN	419	494	2.1e-36	SMART
ACR	495	623	1.84e-52	SMART
EGF	631	660	3.01e0	SMART
transmembrane domain	667	689	N/A	INTRINSIC
low complexity region	738	753	N/A	INTRINSIC
low complexity region	757	765	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000111072
AA Change: Q184K

PolyPhen 2 Score 0.015 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000106701
Gene: ENSMUSG00000014725
AA Change: Q184K

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
Pfam:Pep_M12B_propep	31	158	5.3e-34	PFAM
Pfam:Reprolysin_4	205	387	1.5e-14	PFAM
Pfam:Reprolysin_5	205	388	9.3e-19	PFAM
Pfam:Reprolysin	206	402	5.3e-70	PFAM
Pfam:Reprolysin_2	226	392	9.9e-17	PFAM
Pfam:Reprolysin_3	230	353	1.1e-21	PFAM
DISIN	419	494	2.1e-36	SMART
ACR	495	623	1.84e-52	SMART
EGF	631	660	3.01e0	SMART
transmembrane domain	667	689	N/A	INTRINSIC
low complexity region	738	753	N/A	INTRINSIC
low complexity region	757	765	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000224039
AA Change: Q184K

PolyPhen 2 Score 0.015 (Sensitivity: 0.96; Specificity: 0.79)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000224131

Meta Mutation Damage Score

0.0824

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 96.9%
20x: 94.5%

Validation Efficiency

98% (89/91)

MGI Phenotype

FUNCTION: This gene encodes a member of the ADAM (a disintegrin and metalloprotease domain) family. Members of this family are typically membrane-anchored, although a form of this protein may be secreted. Alternative splicing results in multiple transcript variants, at least one of which encodes a preproprotein that is proteolytically processed to generate a mature protein product. This protein may bind to integrins and regulate lymphocyte migration by enhancing cell adhesion. [provided by RefSeq, Aug 2015]

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca9	A	G	11: 110,039,706 (GRCm39)	F436L	probably damaging	Het
Adh6a	A	G	3: 138,031,932 (GRCm39)	T275A	possibly damaging	Het
Agap2	A	G	10: 126,927,244 (GRCm39)	D1082G	possibly damaging	Het
Alox5	A	T	6: 116,400,150 (GRCm39)	V263E	probably damaging	Het
Arhgef16	C	T	4: 154,372,420 (GRCm39)		probably null	Het
Bspry	G	A	4: 62,404,762 (GRCm39)	R186Q	probably damaging	Het
Ccdc188	T	A	16: 18,036,159 (GRCm39)	H111Q	probably damaging	Het
Cd40	T	C	2: 164,911,615 (GRCm39)	F209S	possibly damaging	Het
Cfap43	C	A	19: 47,736,298 (GRCm39)	V1398L	probably benign	Het
Cln3	A	T	7: 126,174,565 (GRCm39)	I286N	possibly damaging	Het
Col9a1	T	C	1: 24,263,787 (GRCm39)		probably null	Het
Cpne9	A	G	6: 113,279,016 (GRCm39)	E470G	probably damaging	Het
Cul5	A	T	9: 53,534,171 (GRCm39)	W654R	probably damaging	Het
Cyp2a22	T	A	7: 26,638,634 (GRCm39)	K51*	probably null	Het
Dcaf10	G	A	4: 45,372,769 (GRCm39)	R394Q	possibly damaging	Het
Dot1l	C	A	10: 80,622,016 (GRCm39)	S556*	probably null	Het
Eif3d	A	T	15: 77,851,516 (GRCm39)	M98K	probably benign	Het
Fiz1	A	G	7: 5,012,167 (GRCm39)	V117A	probably benign	Het
Fryl	A	G	5: 73,257,636 (GRCm39)	V722A	probably benign	Het
Ftdc1	G	A	16: 58,434,333 (GRCm39)	T128I	probably benign	Het
Gm3095	G	T	14: 3,964,471 (GRCm38)	R63I	probably benign	Het
Gm7133	A	T	1: 97,197,224 (GRCm39)		noncoding transcript	Het
Hoxb8	A	T	11: 96,175,286 (GRCm39)	D241V	probably benign	Het
Hrnr	A	G	3: 93,230,959 (GRCm39)	Q399R	unknown	Het
Itpk1	A	T	12: 102,572,434 (GRCm39)	V93D	probably damaging	Het
Kars1	C	T	8: 112,729,216 (GRCm39)	A164T	probably benign	Het
Kcnq4	A	T	4: 120,574,208 (GRCm39)	I150N	probably damaging	Het
Kcnrg	A	T	14: 61,849,176 (GRCm39)	L212F	probably damaging	Het
Kif5b	A	T	18: 6,216,759 (GRCm39)	D521E	probably benign	Het
Klf11	C	T	12: 24,705,071 (GRCm39)	T158M	probably damaging	Het
Klhl6	T	C	16: 19,776,034 (GRCm39)	I175V	probably benign	Het
Lsm1	A	G	8: 26,283,708 (GRCm39)	N40S	probably damaging	Het
Map1b	T	C	13: 99,567,576 (GRCm39)	E1715G	unknown	Het
Mecom	C	A	3: 30,292,459 (GRCm39)	A4S	probably benign	Het
Muc5b	G	A	7: 141,396,031 (GRCm39)	V96M	unknown	Het
Mug2	A	T	6: 122,013,255 (GRCm39)	I341L	probably benign	Het
Mxra7	A	T	11: 116,707,078 (GRCm39)		probably null	Het
Myo5a	T	C	9: 75,061,105 (GRCm39)	L537P	probably damaging	Het
Myo5b	A	T	18: 74,855,533 (GRCm39)	N1241Y	probably damaging	Het
Naa16	T	C	14: 79,582,497 (GRCm39)	R531G	probably damaging	Het
Neb	T	A	2: 52,134,087 (GRCm39)	M3299L	probably benign	Het
Nlrp4b	T	A	7: 10,453,130 (GRCm39)	Y76N	probably benign	Het
Nmral1	T	C	16: 4,534,205 (GRCm39)	T79A	probably damaging	Het
Noct	C	T	3: 51,155,300 (GRCm39)	Q23*	probably null	Het
Nrxn1	A	T	17: 90,344,509 (GRCm39)	V438D	probably damaging	Het
Or5b109	A	C	19: 13,212,132 (GRCm39)	N173H	possibly damaging	Het
Or5m9	T	A	2: 85,877,242 (GRCm39)	C139S	probably damaging	Het
Oxct2a	T	C	4: 123,216,836 (GRCm39)	T182A	probably benign	Het
Pank2	T	C	2: 131,115,945 (GRCm39)	I121T	probably damaging	Het
Pcdh1	T	A	18: 38,336,528 (GRCm39)	T36S	probably benign	Het
Pfdn1	A	T	18: 36,584,133 (GRCm39)	M67K	possibly damaging	Het
Plec	T	C	15: 76,058,456 (GRCm39)	E3849G	probably damaging	Het
Polr3a	A	T	14: 24,514,349 (GRCm39)	S817T	possibly damaging	Het
Pomgnt1	T	A	4: 116,012,707 (GRCm39)	D401E	probably damaging	Het
Ppp1r13b	T	A	12: 111,798,992 (GRCm39)	D891V	probably damaging	Het
Prr14l	A	G	5: 33,001,500 (GRCm39)		probably benign	Het
Ptk2b	A	G	14: 66,410,749 (GRCm39)		probably null	Het
Rab13	G	C	3: 90,128,330 (GRCm39)		probably null	Het
Rexo1	C	T	10: 80,382,255 (GRCm39)	A751T	probably benign	Het
Rfx1	T	C	8: 84,809,374 (GRCm39)	V233A	possibly damaging	Het
Rnf149	C	T	1: 39,616,295 (GRCm39)		probably benign	Het
Rrm1	A	G	7: 102,097,086 (GRCm39)	D122G	probably benign	Het
Serpina1b	A	G	12: 103,698,639 (GRCm39)	F70S	probably damaging	Het
Serpinb13	C	T	1: 106,910,574 (GRCm39)	S66L	probably damaging	Het
Sh3rf3	T	C	10: 58,649,526 (GRCm39)	S44P	possibly damaging	Het
Shroom1	A	G	11: 53,356,549 (GRCm39)	T471A	possibly damaging	Het
Slc6a1	A	G	6: 114,279,792 (GRCm39)	Y152C	probably damaging	Het
Spata31f3	T	A	4: 42,873,032 (GRCm39)		probably null	Het
Spata6	A	T	4: 111,632,023 (GRCm39)	T145S	probably damaging	Het
Srcap	G	A	7: 127,137,186 (GRCm39)	G956D	probably damaging	Het
Ssh2	A	T	11: 77,346,031 (GRCm39)	I1339F	possibly damaging	Het
Tardbp	A	T	4: 148,697,078 (GRCm39)	*99K	probably null	Het
Tbc1d22a	A	G	15: 86,196,037 (GRCm39)	Y336C	probably damaging	Het
Tmcc3	G	A	10: 94,381,419 (GRCm39)		probably benign	Het
Tmem178b	T	G	6: 40,222,547 (GRCm39)	D87E	probably benign	Het
Tmem184a	A	C	5: 139,791,377 (GRCm39)	S380A	probably benign	Het
Tnfaip2	A	G	12: 111,411,682 (GRCm39)	K84R	possibly damaging	Het
Tpgs1	A	G	10: 79,511,235 (GRCm39)	T126A	probably benign	Het
Traf3ip1	A	G	1: 91,447,834 (GRCm39)	E437G	possibly damaging	Het
Trpc4ap	C	T	2: 155,477,053 (GRCm39)	C755Y	probably damaging	Het
Tsfm	A	G	10: 126,866,547 (GRCm39)		probably benign	Het
Tulp1	A	C	17: 28,570,811 (GRCm39)		probably benign	Het
Vmn1r23	A	T	6: 57,903,010 (GRCm39)	M256K	probably benign	Het
Zdhhc8	T	C	16: 18,044,605 (GRCm39)	D305G	probably damaging	Het
Zfp326	G	A	5: 106,054,942 (GRCm39)	R282H	probably damaging	Het

Other mutations in Adam28

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00336:Adam28	APN	14	68,859,569 (GRCm39)	missense	possibly damaging	0.47
IGL00654:Adam28	APN	14	68,886,877 (GRCm39)	missense	probably benign	0.00
IGL01021:Adam28	APN	14	68,879,563 (GRCm39)	missense	probably benign
IGL01099:Adam28	APN	14	68,874,778 (GRCm39)	critical splice donor site	probably null
IGL01349:Adam28	APN	14	68,848,455 (GRCm39)	missense	probably benign	0.01
IGL01744:Adam28	APN	14	68,844,956 (GRCm39)	missense	probably benign	0.07
IGL01805:Adam28	APN	14	68,879,540 (GRCm39)	missense	probably benign	0.09
IGL02007:Adam28	APN	14	68,870,668 (GRCm39)	missense	possibly damaging	0.69
IGL02828:Adam28	APN	14	68,884,319 (GRCm39)	missense	possibly damaging	0.46
IGL03180:Adam28	APN	14	68,874,883 (GRCm39)	missense	probably damaging	1.00
IGL03355:Adam28	APN	14	68,872,252 (GRCm39)	splice site	probably benign
IGL02980:Adam28	UTSW	14	68,857,255 (GRCm39)	missense	probably benign	0.01
PIT4453001:Adam28	UTSW	14	68,872,325 (GRCm39)	missense	probably benign	0.00
R0184:Adam28	UTSW	14	68,874,822 (GRCm39)	missense	probably benign	0.33
R0321:Adam28	UTSW	14	68,855,200 (GRCm39)	missense	probably damaging	0.97
R0329:Adam28	UTSW	14	68,855,188 (GRCm39)	missense	probably damaging	0.96
R0494:Adam28	UTSW	14	68,868,241 (GRCm39)	splice site	probably benign
R0605:Adam28	UTSW	14	68,844,049 (GRCm39)	unclassified	probably benign
R0732:Adam28	UTSW	14	68,874,796 (GRCm39)	missense	probably benign	0.00
R0959:Adam28	UTSW	14	68,845,387 (GRCm39)	missense	possibly damaging	0.93
R1319:Adam28	UTSW	14	68,846,578 (GRCm39)	missense	probably benign	0.28
R1745:Adam28	UTSW	14	68,870,620 (GRCm39)	missense	probably benign	0.04
R1836:Adam28	UTSW	14	68,886,870 (GRCm39)	missense	possibly damaging	0.85
R1838:Adam28	UTSW	14	68,876,659 (GRCm39)	missense	possibly damaging	0.53
R1839:Adam28	UTSW	14	68,876,659 (GRCm39)	missense	possibly damaging	0.53
R1850:Adam28	UTSW	14	68,876,644 (GRCm39)	missense	probably benign	0.01
R1912:Adam28	UTSW	14	68,881,780 (GRCm39)	missense	probably benign	0.24
R2830:Adam28	UTSW	14	68,864,363 (GRCm39)	missense	possibly damaging	0.65
R2889:Adam28	UTSW	14	68,872,294 (GRCm39)	missense	possibly damaging	0.85
R3977:Adam28	UTSW	14	68,848,443 (GRCm39)	missense	probably benign	0.20
R3978:Adam28	UTSW	14	68,848,443 (GRCm39)	missense	probably benign	0.20
R3979:Adam28	UTSW	14	68,848,443 (GRCm39)	missense	probably benign	0.20
R4282:Adam28	UTSW	14	68,885,155 (GRCm39)	missense	possibly damaging	0.92
R4416:Adam28	UTSW	14	68,859,531 (GRCm39)	critical splice donor site	probably null
R4724:Adam28	UTSW	14	68,864,326 (GRCm39)	missense	probably damaging	0.99
R4768:Adam28	UTSW	14	68,872,264 (GRCm39)	missense	possibly damaging	0.46
R4883:Adam28	UTSW	14	68,875,552 (GRCm39)	missense	probably damaging	0.99
R5054:Adam28	UTSW	14	68,855,164 (GRCm39)	missense	probably damaging	1.00
R5710:Adam28	UTSW	14	68,847,357 (GRCm39)	missense	probably damaging	0.96
R5835:Adam28	UTSW	14	68,893,130 (GRCm39)	missense	possibly damaging	0.96
R6002:Adam28	UTSW	14	68,879,511 (GRCm39)	missense	probably benign
R6054:Adam28	UTSW	14	68,879,601 (GRCm39)	missense	probably benign	0.01
R6349:Adam28	UTSW	14	68,870,621 (GRCm39)	missense	probably benign	0.29
R6449:Adam28	UTSW	14	68,868,116 (GRCm39)	missense	probably benign	0.31
R6455:Adam28	UTSW	14	68,870,657 (GRCm39)	missense	probably damaging	1.00
R6831:Adam28	UTSW	14	68,855,576 (GRCm39)	missense	probably benign	0.04
R6833:Adam28	UTSW	14	68,855,576 (GRCm39)	missense	probably benign	0.04
R7212:Adam28	UTSW	14	68,874,846 (GRCm39)	missense	probably damaging	0.99
R7411:Adam28	UTSW	14	68,864,396 (GRCm39)	missense	probably damaging	1.00
R7422:Adam28	UTSW	14	68,864,326 (GRCm39)	missense	probably damaging	1.00
R7516:Adam28	UTSW	14	68,868,125 (GRCm39)	missense	probably damaging	1.00
R7649:Adam28	UTSW	14	68,872,282 (GRCm39)	missense	probably benign	0.12
R7765:Adam28	UTSW	14	68,846,555 (GRCm39)	critical splice donor site	probably null
R8469:Adam28	UTSW	14	68,844,029 (GRCm39)	missense	probably benign	0.16
R8520:Adam28	UTSW	14	68,879,532 (GRCm39)	missense	probably damaging	0.98
R9026:Adam28	UTSW	14	68,846,593 (GRCm39)	missense	probably benign	0.16
R9163:Adam28	UTSW	14	68,866,531 (GRCm39)	missense	probably damaging	0.98
R9264:Adam28	UTSW	14	68,844,914 (GRCm39)	missense	probably benign
R9304:Adam28	UTSW	14	68,874,946 (GRCm39)	missense	probably damaging	1.00
R9357:Adam28	UTSW	14	68,879,479 (GRCm39)	missense	probably benign	0.36
R9441:Adam28	UTSW	14	68,874,943 (GRCm39)	missense	probably damaging	0.96
Z1177:Adam28	UTSW	14	68,864,233 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GACACACAGACAGGGTCATG -3'
(R):5'- TGAGCACTCTGGCTGTACAAC -3'

Sequencing Primer
(F):5'- CAGACAGGGTCATGTATACACATATG -3'
(R):5'- TGTGCTAAGACACCTGAATGC -3'

Posted On

2015-10-21