Mutagenetix > Incidental Mutation

Incidental Mutation 'R4693:Ncbp3'

355054

Institutional Source

Beutler Lab

Gene Symbol

Ncbp3

Ensembl Gene

ENSMUSG00000020783

Gene Name

nuclear cap binding subunit 3

Synonyms

1200014J11Rik

MMRRC Submission

041944-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.227) question?

Stock #

R4693 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

72937443-72974405 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 72966503 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Serine at position 453 (L453S)

Ref Sequence

ENSEMBL: ENSMUSP00000021135 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021135]

AlphaFold

Q8BZR9

Predicted Effect

probably benign
Transcript: ENSMUST00000021135
AA Change: L453S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000021135
Gene: ENSMUSG00000020783
AA Change: L453S

Domain	Start	End	E-Value	Type
low complexity region	13	27	N/A	INTRINSIC
low complexity region	33	52	N/A	INTRINSIC
Pfam:DUF2414	123	177	4.5e-24	PFAM
low complexity region	191	231	N/A	INTRINSIC
coiled coil region	345	364	N/A	INTRINSIC
low complexity region	379	403	N/A	INTRINSIC
low complexity region	581	592	N/A	INTRINSIC
low complexity region	602	615	N/A	INTRINSIC

Meta Mutation Damage Score

0.0718

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.7%

Validation Efficiency

100% (79/79)

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcg8	T	C	17: 85,004,125 (GRCm39)	Y478H	probably damaging	Het
Adar	A	T	3: 89,643,247 (GRCm39)	H128L	probably damaging	Het
Angptl6	G	T	9: 20,786,598 (GRCm39)	D349E	probably damaging	Het
Anxa9	T	C	3: 95,204,667 (GRCm39)	T286A	probably benign	Het
Apobr	A	G	7: 126,186,019 (GRCm39)	N510S	probably damaging	Het
Atoh7	G	T	10: 62,936,275 (GRCm39)	R114L	probably benign	Het
Bank1	C	G	3: 135,953,437 (GRCm39)	R106P	probably damaging	Het
Best1	C	T	19: 9,974,499 (GRCm39)	G15D	probably damaging	Het
Best2	A	T	8: 85,737,832 (GRCm39)	F188I	probably damaging	Het
Ccdc88a	T	C	11: 29,432,241 (GRCm39)	Y344H	probably damaging	Het
Col6a5	A	G	9: 105,814,371 (GRCm39)	L547P	unknown	Het
Cyp19a1	A	T	9: 54,080,617 (GRCm39)	S247T	possibly damaging	Het
Cyp26a1	T	C	19: 37,686,925 (GRCm39)	S126P	probably benign	Het
Dab1	G	T	4: 104,536,750 (GRCm39)	C180F	probably damaging	Het
Dclk2	T	C	3: 86,722,400 (GRCm39)	D412G	possibly damaging	Het
Dspp	A	T	5: 104,325,928 (GRCm39)	S764C	unknown	Het
Dync1li1	C	A	9: 114,535,166 (GRCm39)	D143E	probably damaging	Het
Esm1	A	T	13: 113,346,594 (GRCm39)	D73V	probably damaging	Het
Etfdh	A	T	3: 79,513,110 (GRCm39)	V431E	probably damaging	Het
Fam83c	C	T	2: 155,672,154 (GRCm39)	R427H	probably damaging	Het
Galnt9	A	G	5: 110,763,375 (GRCm39)	Y93C	probably damaging	Het
Gm6818	G	A	7: 38,100,126 (GRCm39)		noncoding transcript	Het
Gosr2	A	G	11: 103,574,755 (GRCm39)	S114P	probably benign	Het
Grip1	G	A	10: 119,836,459 (GRCm39)	V444I	probably benign	Het
Gvin-ps3	T	G	7: 105,681,585 (GRCm39)		noncoding transcript	Het
Haus4	G	T	14: 54,787,256 (GRCm39)	A67E	probably benign	Het
Hectd2	T	A	19: 36,591,738 (GRCm39)		probably benign	Het
Kndc1	T	C	7: 139,501,695 (GRCm39)	Y911H	probably benign	Het
Lim2	T	C	7: 43,080,105 (GRCm39)	Y31H	probably damaging	Het
Lims2	G	A	18: 32,077,552 (GRCm39)	R101H	probably benign	Het
Lrrc2	T	A	9: 110,799,161 (GRCm39)	M236K	probably damaging	Het
Lrrc37	T	A	11: 103,510,686 (GRCm39)	E427D	unknown	Het
Lrrk1	T	C	7: 65,912,235 (GRCm39)	Y1775C	probably damaging	Het
Mdga2	A	G	12: 66,844,407 (GRCm39)	V197A	possibly damaging	Het
Mfhas1	T	A	8: 36,056,329 (GRCm39)	L268Q	probably damaging	Het
Mlh1	A	G	9: 111,084,726 (GRCm39)	I216T	probably damaging	Het
Mrc2	G	A	11: 105,234,528 (GRCm39)	C1016Y	probably benign	Het
Mvp	C	A	7: 126,597,500 (GRCm39)	V168F	probably damaging	Het
Mybphl	A	G	3: 108,282,494 (GRCm39)	T176A	probably benign	Het
Myt1	T	A	2: 181,437,532 (GRCm39)	L81Q	probably damaging	Het
Or4c1	T	A	2: 89,133,621 (GRCm39)	E105V	probably benign	Het
Or4c114	T	C	2: 88,905,412 (GRCm39)	T8A	possibly damaging	Het
Or55b10	T	A	7: 102,143,659 (GRCm39)	I108F	probably damaging	Het
Or5b125-ps1	C	A	19: 13,056,226 (GRCm39)		noncoding transcript	Het
Or5l14	A	T	2: 87,793,053 (GRCm39)	F61Y	probably benign	Het
Pak4	A	T	7: 28,263,674 (GRCm39)	M354K	probably damaging	Het
Pax3	T	C	1: 78,173,383 (GRCm39)	T2A	probably benign	Het
Pcdh17	A	G	14: 84,770,960 (GRCm39)	D1146G	probably damaging	Het
Pcyt1a	T	C	16: 32,289,042 (GRCm39)		probably benign	Het
Pfkp	C	T	13: 6,650,671 (GRCm39)	G467D	possibly damaging	Het
Plin4	C	A	17: 56,410,762 (GRCm39)	G1090C	probably damaging	Het
Pth1r	A	G	9: 110,560,692 (GRCm39)	V25A	probably damaging	Het
Ptk2b	C	T	14: 66,394,518 (GRCm39)	G859S	probably benign	Het
Ptprf	T	A	4: 118,068,219 (GRCm39)	E1772D	probably benign	Het
Sall2	T	C	14: 52,551,935 (GRCm39)	H420R	probably damaging	Het
Sbds	G	A	5: 130,279,816 (GRCm39)	R63W	probably damaging	Het
Sccpdh	A	G	1: 179,495,975 (GRCm39)	T19A	possibly damaging	Het
Scn8a	A	T	15: 100,913,572 (GRCm39)	D988V	probably damaging	Het
Slamf6	C	T	1: 171,761,680 (GRCm39)	Q34*	probably null	Het
Slc22a6	T	A	19: 8,601,016 (GRCm39)	I403N	probably damaging	Het
Sox5	T	C	6: 143,781,042 (GRCm39)	Y574C	probably damaging	Het
Sptbn5	T	A	2: 119,889,897 (GRCm39)		probably benign	Het
Srcap	T	A	7: 127,137,716 (GRCm39)	V1022E	probably damaging	Het
Tbx3	G	A	5: 119,815,635 (GRCm39)	E292K	possibly damaging	Het
Tbx5	A	T	5: 119,979,964 (GRCm39)	H170L	probably damaging	Het
Tcf12	A	T	9: 71,776,249 (GRCm39)		probably benign	Het
Themis	G	A	10: 28,658,647 (GRCm39)	R558H	probably damaging	Het
Tiam1	T	C	16: 89,640,170 (GRCm39)	E849G	possibly damaging	Het
Vav3	A	G	3: 109,470,534 (GRCm39)		probably benign	Het
Vmn2r90	T	A	17: 17,953,956 (GRCm39)	C707S	possibly damaging	Het
Vmn2r96	T	G	17: 18,803,270 (GRCm39)	N201K	probably benign	Het
Zfp148	C	T	16: 33,288,505 (GRCm39)	R207C	probably damaging	Het
Zfp648	G	T	1: 154,080,152 (GRCm39)	A104S	probably benign	Het

Other mutations in Ncbp3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00088:Ncbp3	APN	11	72,964,355 (GRCm39)	splice site	probably benign
R0180:Ncbp3	UTSW	11	72,955,804 (GRCm39)	splice site	probably null
R0464:Ncbp3	UTSW	11	72,960,647 (GRCm39)	splice site	probably benign
R0620:Ncbp3	UTSW	11	72,940,671 (GRCm39)	splice site	probably benign
R2024:Ncbp3	UTSW	11	72,944,346 (GRCm39)	missense	possibly damaging	0.95
R2121:Ncbp3	UTSW	11	72,944,304 (GRCm39)	missense	possibly damaging	0.56
R4610:Ncbp3	UTSW	11	72,969,844 (GRCm39)	missense	probably damaging	0.98
R4883:Ncbp3	UTSW	11	72,960,578 (GRCm39)	missense	probably damaging	0.99
R4974:Ncbp3	UTSW	11	72,944,355 (GRCm39)	critical splice donor site	probably null
R5212:Ncbp3	UTSW	11	72,944,373 (GRCm39)	intron	probably benign
R5740:Ncbp3	UTSW	11	72,944,323 (GRCm39)	missense	possibly damaging	0.88
R5906:Ncbp3	UTSW	11	72,964,327 (GRCm39)	missense	probably benign	0.04
R6026:Ncbp3	UTSW	11	72,958,548 (GRCm39)	missense	probably benign	0.00
R6154:Ncbp3	UTSW	11	72,940,700 (GRCm39)	missense	probably damaging	1.00
R6403:Ncbp3	UTSW	11	72,969,802 (GRCm39)	missense	probably benign	0.00
R6626:Ncbp3	UTSW	11	72,964,210 (GRCm39)	missense	possibly damaging	0.88
R6838:Ncbp3	UTSW	11	72,964,300 (GRCm39)	missense	possibly damaging	0.89
R7155:Ncbp3	UTSW	11	72,938,835 (GRCm39)	missense	probably damaging	0.99
R7369:Ncbp3	UTSW	11	72,968,747 (GRCm39)	missense	probably benign	0.00
R7587:Ncbp3	UTSW	11	72,957,591 (GRCm39)	splice site	probably null
R7657:Ncbp3	UTSW	11	72,964,193 (GRCm39)	missense	probably damaging	1.00
R8774:Ncbp3	UTSW	11	72,938,808 (GRCm39)	missense	probably benign
R8774-TAIL:Ncbp3	UTSW	11	72,938,808 (GRCm39)	missense	probably benign
R9063:Ncbp3	UTSW	11	72,964,253 (GRCm39)	missense	probably damaging	1.00
R9478:Ncbp3	UTSW	11	72,968,768 (GRCm39)	missense	probably damaging	0.99
R9513:Ncbp3	UTSW	11	72,938,727 (GRCm39)	start codon destroyed	probably null	0.95
R9670:Ncbp3	UTSW	11	72,944,323 (GRCm39)	missense	possibly damaging	0.88
R9762:Ncbp3	UTSW	11	72,961,668 (GRCm39)	missense	probably benign	0.35
Y5379:Ncbp3	UTSW	11	72,964,086 (GRCm39)	small deletion	probably benign
Z1177:Ncbp3	UTSW	11	72,938,794 (GRCm39)	frame shift	probably null

Predicted Primers

PCR Primer
(F):5'- CAGTGGTAGTTGTAAGTCAGTGAC -3'
(R):5'- CTTGGCCACTTGCATACTGAG -3'

Sequencing Primer
(F):5'- GTCAGTGACGGTCATCTTAAACTGAG -3'
(R):5'- CACTTGCATACTGAGGGGCTG -3'

Posted On

2015-10-21