Incidental Mutation 'R4703:Vmn2r59'
ID |
356209 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn2r59
|
Ensembl Gene |
ENSMUSG00000092032 |
Gene Name |
vomeronasal 2, receptor 59 |
Synonyms |
EG628444 |
MMRRC Submission |
041951-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.079)
|
Stock # |
R4703 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
7 |
Chromosomal Location |
41661216-41708405 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to A
at 41661686 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Isoleucine to Leucine
at position 710
(I710L)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000131856
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000168489]
|
AlphaFold |
E9PUT5 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000168489
AA Change: I710L
PolyPhen 2
Score 0.013 (Sensitivity: 0.96; Specificity: 0.78)
|
SMART Domains |
Protein: ENSMUSP00000131856 Gene: ENSMUSG00000092032 AA Change: I710L
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
17 |
N/A |
INTRINSIC |
Pfam:ANF_receptor
|
77 |
471 |
1.8e-44 |
PFAM |
Pfam:NCD3G
|
514 |
567 |
4.3e-23 |
PFAM |
Pfam:7tm_3
|
600 |
835 |
5.4e-53 |
PFAM |
|
Meta Mutation Damage Score |
0.0898 |
Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 97.0%
- 20x: 94.6%
|
Validation Efficiency |
97% (98/101) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 89 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
4921517D22Rik |
T |
A |
13: 59,837,342 (GRCm39) |
T248S |
possibly damaging |
Het |
AA986860 |
T |
C |
1: 130,671,092 (GRCm39) |
V438A |
probably benign |
Het |
Adam25 |
G |
T |
8: 41,207,163 (GRCm39) |
C143F |
probably damaging |
Het |
Aox1 |
T |
A |
1: 58,398,116 (GRCm39) |
F1286I |
possibly damaging |
Het |
Apobec4 |
A |
G |
1: 152,632,001 (GRCm39) |
T10A |
probably benign |
Het |
Arhgap5 |
C |
T |
12: 52,564,366 (GRCm39) |
P446S |
probably damaging |
Het |
Arhgef40 |
A |
G |
14: 52,239,767 (GRCm39) |
N1327S |
probably damaging |
Het |
Armc12 |
A |
G |
17: 28,751,336 (GRCm39) |
D110G |
probably benign |
Het |
Ascc1 |
A |
G |
10: 59,885,624 (GRCm39) |
Y225C |
probably damaging |
Het |
Aspscr1 |
A |
T |
11: 120,579,771 (GRCm39) |
K39N |
possibly damaging |
Het |
B4galnt1 |
G |
T |
10: 127,003,394 (GRCm39) |
V172F |
possibly damaging |
Het |
B4galt1 |
A |
G |
4: 40,823,569 (GRCm39) |
V174A |
probably benign |
Het |
Bcl11a |
C |
A |
11: 24,113,725 (GRCm39) |
A356E |
possibly damaging |
Het |
Bri3bp |
C |
T |
5: 125,528,830 (GRCm39) |
L110F |
probably damaging |
Het |
Cacna1b |
T |
C |
2: 24,544,475 (GRCm39) |
D1231G |
probably damaging |
Het |
Ccdc33 |
T |
A |
9: 57,940,953 (GRCm39) |
I430F |
possibly damaging |
Het |
Cgn |
A |
G |
3: 94,683,405 (GRCm39) |
|
probably benign |
Het |
Crbn |
T |
A |
6: 106,759,883 (GRCm39) |
I317F |
possibly damaging |
Het |
Cyp2d22 |
A |
C |
15: 82,260,118 (GRCm39) |
L22R |
probably damaging |
Het |
Dnah7a |
C |
T |
1: 53,486,476 (GRCm39) |
|
probably null |
Het |
Dnajc12 |
A |
G |
10: 63,222,429 (GRCm39) |
|
probably null |
Het |
Dntt |
T |
A |
19: 41,028,242 (GRCm39) |
D179E |
probably benign |
Het |
Enam |
T |
A |
5: 88,651,650 (GRCm39) |
L1053* |
probably null |
Het |
Epn1 |
T |
A |
7: 5,098,147 (GRCm39) |
D319E |
probably damaging |
Het |
Evpl |
C |
G |
11: 116,113,331 (GRCm39) |
R1453P |
probably damaging |
Het |
Focad |
T |
A |
4: 88,260,558 (GRCm39) |
|
probably null |
Het |
Foxp2 |
A |
T |
6: 15,411,247 (GRCm39) |
M542L |
probably benign |
Het |
Gak |
T |
A |
5: 108,717,743 (GRCm39) |
Q1299L |
probably damaging |
Het |
Galnt5 |
G |
T |
2: 57,888,919 (GRCm39) |
R173I |
possibly damaging |
Het |
Gli1 |
G |
T |
10: 127,166,724 (GRCm39) |
P843Q |
possibly damaging |
Het |
Gm5422 |
G |
T |
10: 31,125,608 (GRCm39) |
|
noncoding transcript |
Het |
Gna14 |
T |
G |
19: 16,576,344 (GRCm39) |
V117G |
possibly damaging |
Het |
Gpr6 |
T |
C |
10: 40,947,037 (GRCm39) |
T182A |
probably damaging |
Het |
Ifi204 |
C |
A |
1: 173,587,927 (GRCm39) |
|
probably benign |
Het |
Ifih1 |
A |
T |
2: 62,429,220 (GRCm39) |
L906H |
probably benign |
Het |
Ift88 |
A |
G |
14: 57,718,307 (GRCm39) |
|
probably benign |
Het |
Ighd |
A |
G |
12: 113,379,661 (GRCm39) |
|
probably benign |
Het |
Ighv11-1 |
A |
C |
12: 113,945,622 (GRCm39) |
I77R |
possibly damaging |
Het |
Il22 |
A |
T |
10: 118,041,511 (GRCm39) |
I75F |
probably damaging |
Het |
Il23r |
A |
T |
6: 67,467,686 (GRCm39) |
I27K |
probably damaging |
Het |
Inpp5a |
A |
C |
7: 139,138,839 (GRCm39) |
N261T |
probably damaging |
Het |
Ints8 |
T |
G |
4: 11,223,785 (GRCm39) |
Q686P |
possibly damaging |
Het |
Iqcf4 |
T |
C |
9: 106,445,519 (GRCm39) |
|
probably null |
Het |
Irf2bp1 |
C |
T |
7: 18,739,496 (GRCm39) |
R379C |
possibly damaging |
Het |
Iws1 |
C |
T |
18: 32,213,066 (GRCm39) |
P165S |
probably benign |
Het |
Kalrn |
T |
C |
16: 34,024,327 (GRCm39) |
D610G |
probably damaging |
Het |
Kcna10 |
A |
T |
3: 107,101,926 (GRCm39) |
I186F |
probably benign |
Het |
Limk2 |
C |
A |
11: 3,297,586 (GRCm39) |
E329* |
probably null |
Het |
Nadk |
C |
A |
4: 155,669,684 (GRCm39) |
P157T |
probably benign |
Het |
Notch1 |
T |
G |
2: 26,361,170 (GRCm39) |
K1107Q |
probably benign |
Het |
Nsd1 |
T |
A |
13: 55,361,876 (GRCm39) |
D281E |
probably damaging |
Het |
Obi1 |
A |
G |
14: 104,743,644 (GRCm39) |
L145P |
probably benign |
Het |
Olfml2a |
T |
A |
2: 38,841,250 (GRCm39) |
L262Q |
probably damaging |
Het |
Or1ab2 |
T |
A |
8: 72,864,044 (GRCm39) |
F211L |
probably damaging |
Het |
Or4k44 |
T |
A |
2: 111,368,113 (GRCm39) |
I174L |
probably benign |
Het |
Or51d1 |
A |
T |
7: 102,347,477 (GRCm39) |
T11S |
probably benign |
Het |
Or6k6 |
A |
G |
1: 173,944,964 (GRCm39) |
I206T |
possibly damaging |
Het |
Or7c19 |
A |
G |
8: 85,957,237 (GRCm39) |
T38A |
possibly damaging |
Het |
Otogl |
A |
C |
10: 107,657,785 (GRCm39) |
D1048E |
probably damaging |
Het |
Oxnad1 |
T |
C |
14: 31,817,427 (GRCm39) |
W96R |
probably damaging |
Het |
Pcdh15 |
A |
T |
10: 74,285,995 (GRCm39) |
D743V |
probably damaging |
Het |
Pclo |
A |
G |
5: 14,726,494 (GRCm39) |
|
probably benign |
Het |
Pcnx1 |
C |
T |
12: 81,941,938 (GRCm39) |
T112I |
probably benign |
Het |
Pctp |
T |
C |
11: 89,878,099 (GRCm39) |
E145G |
possibly damaging |
Het |
Pip5k1b |
T |
C |
19: 24,332,517 (GRCm39) |
K389R |
probably damaging |
Het |
Pla2g15 |
T |
A |
8: 106,889,691 (GRCm39) |
M321K |
probably benign |
Het |
Pnlip |
T |
A |
19: 58,664,899 (GRCm39) |
D242E |
probably damaging |
Het |
Ptpn21 |
T |
C |
12: 98,645,651 (GRCm39) |
T1096A |
probably benign |
Het |
Rims3 |
A |
T |
4: 120,740,494 (GRCm39) |
|
probably benign |
Het |
Scfd2 |
T |
A |
5: 74,680,256 (GRCm39) |
Q299L |
probably benign |
Het |
Selplg |
T |
C |
5: 113,957,094 (GRCm39) |
D404G |
probably benign |
Het |
Slc15a5 |
T |
C |
6: 138,032,643 (GRCm39) |
D237G |
probably benign |
Het |
Slc16a12 |
T |
A |
19: 34,652,291 (GRCm39) |
H285L |
possibly damaging |
Het |
Sox2 |
C |
A |
3: 34,704,862 (GRCm39) |
R100S |
probably damaging |
Het |
Sspo |
G |
A |
6: 48,477,387 (GRCm39) |
C4969Y |
probably damaging |
Het |
Stxbp2 |
A |
G |
8: 3,682,521 (GRCm39) |
S37G |
probably damaging |
Het |
Tbxas1 |
T |
C |
6: 39,060,791 (GRCm39) |
|
probably null |
Het |
Tcf4 |
A |
G |
18: 69,790,981 (GRCm39) |
Y307C |
probably damaging |
Het |
Thsd7b |
A |
T |
1: 129,977,646 (GRCm39) |
|
probably benign |
Het |
Tnn |
G |
T |
1: 159,943,815 (GRCm39) |
D999E |
possibly damaging |
Het |
Trmt13 |
C |
A |
3: 116,388,247 (GRCm39) |
W63L |
probably benign |
Het |
Tsc2 |
T |
C |
17: 24,823,883 (GRCm39) |
N915S |
probably benign |
Het |
Tyrp1 |
T |
A |
4: 80,759,043 (GRCm39) |
|
probably null |
Het |
Uvrag |
A |
T |
7: 98,638,794 (GRCm39) |
I315N |
probably damaging |
Het |
Vmn1r31 |
C |
A |
6: 58,448,953 (GRCm39) |
*304L |
probably null |
Het |
Vmn2r82 |
A |
T |
10: 79,214,641 (GRCm39) |
H208L |
probably damaging |
Het |
Wtap |
T |
C |
17: 13,199,711 (GRCm39) |
T91A |
probably benign |
Het |
Xirp1 |
A |
T |
9: 119,846,093 (GRCm39) |
V930E |
probably damaging |
Het |
Xpo4 |
T |
G |
14: 57,827,565 (GRCm39) |
H877P |
probably benign |
Het |
|
Other mutations in Vmn2r59 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00088:Vmn2r59
|
APN |
7 |
41,661,488 (GRCm39) |
missense |
possibly damaging |
0.91 |
IGL01432:Vmn2r59
|
APN |
7 |
41,661,983 (GRCm39) |
missense |
possibly damaging |
0.82 |
IGL02119:Vmn2r59
|
APN |
7 |
41,695,593 (GRCm39) |
missense |
probably benign |
0.36 |
IGL02216:Vmn2r59
|
APN |
7 |
41,661,817 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02327:Vmn2r59
|
APN |
7 |
41,661,655 (GRCm39) |
missense |
probably benign |
|
IGL03346:Vmn2r59
|
APN |
7 |
41,693,253 (GRCm39) |
missense |
probably benign |
0.00 |
IGL03411:Vmn2r59
|
APN |
7 |
41,708,340 (GRCm39) |
missense |
probably benign |
0.43 |
IGL03412:Vmn2r59
|
APN |
7 |
41,661,862 (GRCm39) |
missense |
probably benign |
|
PIT4366001:Vmn2r59
|
UTSW |
7 |
41,695,205 (GRCm39) |
missense |
possibly damaging |
0.91 |
R0068:Vmn2r59
|
UTSW |
7 |
41,695,725 (GRCm39) |
missense |
probably damaging |
0.99 |
R0094:Vmn2r59
|
UTSW |
7 |
41,661,722 (GRCm39) |
missense |
probably benign |
0.07 |
R0179:Vmn2r59
|
UTSW |
7 |
41,696,432 (GRCm39) |
nonsense |
probably null |
|
R0370:Vmn2r59
|
UTSW |
7 |
41,662,150 (GRCm39) |
missense |
probably benign |
0.23 |
R0412:Vmn2r59
|
UTSW |
7 |
41,695,916 (GRCm39) |
splice site |
probably benign |
|
R0465:Vmn2r59
|
UTSW |
7 |
41,696,332 (GRCm39) |
missense |
probably benign |
|
R0487:Vmn2r59
|
UTSW |
7 |
41,696,528 (GRCm39) |
nonsense |
probably null |
|
R0576:Vmn2r59
|
UTSW |
7 |
41,696,529 (GRCm39) |
missense |
probably benign |
0.01 |
R0632:Vmn2r59
|
UTSW |
7 |
41,708,308 (GRCm39) |
missense |
probably damaging |
1.00 |
R1356:Vmn2r59
|
UTSW |
7 |
41,661,218 (GRCm39) |
makesense |
probably null |
|
R1387:Vmn2r59
|
UTSW |
7 |
41,695,521 (GRCm39) |
missense |
probably damaging |
1.00 |
R1388:Vmn2r59
|
UTSW |
7 |
41,695,133 (GRCm39) |
missense |
probably benign |
0.01 |
R1435:Vmn2r59
|
UTSW |
7 |
41,695,629 (GRCm39) |
missense |
possibly damaging |
0.50 |
R1750:Vmn2r59
|
UTSW |
7 |
41,695,251 (GRCm39) |
missense |
possibly damaging |
0.50 |
R2020:Vmn2r59
|
UTSW |
7 |
41,693,203 (GRCm39) |
missense |
probably damaging |
1.00 |
R2249:Vmn2r59
|
UTSW |
7 |
41,708,326 (GRCm39) |
missense |
probably benign |
0.00 |
R2256:Vmn2r59
|
UTSW |
7 |
41,661,669 (GRCm39) |
nonsense |
probably null |
|
R2257:Vmn2r59
|
UTSW |
7 |
41,661,669 (GRCm39) |
nonsense |
probably null |
|
R2441:Vmn2r59
|
UTSW |
7 |
41,695,570 (GRCm39) |
missense |
probably benign |
0.00 |
R2511:Vmn2r59
|
UTSW |
7 |
41,693,190 (GRCm39) |
missense |
probably damaging |
1.00 |
R2860:Vmn2r59
|
UTSW |
7 |
41,696,427 (GRCm39) |
missense |
possibly damaging |
0.79 |
R2861:Vmn2r59
|
UTSW |
7 |
41,696,427 (GRCm39) |
missense |
possibly damaging |
0.79 |
R3690:Vmn2r59
|
UTSW |
7 |
41,661,370 (GRCm39) |
missense |
possibly damaging |
0.77 |
R3912:Vmn2r59
|
UTSW |
7 |
41,695,744 (GRCm39) |
missense |
probably benign |
0.00 |
R4167:Vmn2r59
|
UTSW |
7 |
41,670,732 (GRCm39) |
intron |
probably benign |
|
R4357:Vmn2r59
|
UTSW |
7 |
41,661,644 (GRCm39) |
missense |
probably damaging |
1.00 |
R4445:Vmn2r59
|
UTSW |
7 |
41,691,874 (GRCm39) |
missense |
probably damaging |
1.00 |
R4542:Vmn2r59
|
UTSW |
7 |
41,695,497 (GRCm39) |
missense |
possibly damaging |
0.93 |
R4587:Vmn2r59
|
UTSW |
7 |
41,695,648 (GRCm39) |
missense |
probably benign |
0.00 |
R4616:Vmn2r59
|
UTSW |
7 |
41,661,862 (GRCm39) |
missense |
probably benign |
|
R4653:Vmn2r59
|
UTSW |
7 |
41,693,228 (GRCm39) |
missense |
probably benign |
0.19 |
R4895:Vmn2r59
|
UTSW |
7 |
41,695,218 (GRCm39) |
missense |
probably damaging |
0.98 |
R4910:Vmn2r59
|
UTSW |
7 |
41,693,077 (GRCm39) |
missense |
probably benign |
|
R5045:Vmn2r59
|
UTSW |
7 |
41,695,496 (GRCm39) |
missense |
possibly damaging |
0.93 |
R5105:Vmn2r59
|
UTSW |
7 |
41,696,529 (GRCm39) |
missense |
probably benign |
0.01 |
R5153:Vmn2r59
|
UTSW |
7 |
41,691,834 (GRCm39) |
critical splice donor site |
probably null |
|
R5566:Vmn2r59
|
UTSW |
7 |
41,696,247 (GRCm39) |
missense |
possibly damaging |
0.92 |
R5586:Vmn2r59
|
UTSW |
7 |
41,695,105 (GRCm39) |
missense |
probably benign |
0.12 |
R5606:Vmn2r59
|
UTSW |
7 |
41,695,318 (GRCm39) |
missense |
probably benign |
0.27 |
R5616:Vmn2r59
|
UTSW |
7 |
41,708,191 (GRCm39) |
splice site |
probably null |
|
R5625:Vmn2r59
|
UTSW |
7 |
41,695,884 (GRCm39) |
missense |
probably benign |
0.03 |
R5696:Vmn2r59
|
UTSW |
7 |
41,695,468 (GRCm39) |
missense |
probably benign |
0.00 |
R5982:Vmn2r59
|
UTSW |
7 |
41,695,491 (GRCm39) |
missense |
probably benign |
0.00 |
R6106:Vmn2r59
|
UTSW |
7 |
41,661,749 (GRCm39) |
nonsense |
probably null |
|
R6196:Vmn2r59
|
UTSW |
7 |
41,661,679 (GRCm39) |
missense |
probably benign |
0.36 |
R6228:Vmn2r59
|
UTSW |
7 |
41,691,835 (GRCm39) |
critical splice donor site |
probably null |
|
R6590:Vmn2r59
|
UTSW |
7 |
41,695,890 (GRCm39) |
missense |
probably damaging |
1.00 |
R6625:Vmn2r59
|
UTSW |
7 |
41,693,177 (GRCm39) |
missense |
probably benign |
0.02 |
R6690:Vmn2r59
|
UTSW |
7 |
41,695,890 (GRCm39) |
missense |
probably damaging |
1.00 |
R6768:Vmn2r59
|
UTSW |
7 |
41,661,392 (GRCm39) |
missense |
probably benign |
0.17 |
R6830:Vmn2r59
|
UTSW |
7 |
41,693,171 (GRCm39) |
missense |
probably benign |
0.10 |
R6859:Vmn2r59
|
UTSW |
7 |
41,693,277 (GRCm39) |
missense |
probably damaging |
1.00 |
R7034:Vmn2r59
|
UTSW |
7 |
41,695,644 (GRCm39) |
missense |
probably benign |
0.03 |
R7036:Vmn2r59
|
UTSW |
7 |
41,695,644 (GRCm39) |
missense |
probably benign |
0.03 |
R7145:Vmn2r59
|
UTSW |
7 |
41,695,188 (GRCm39) |
missense |
probably damaging |
1.00 |
R7556:Vmn2r59
|
UTSW |
7 |
41,695,233 (GRCm39) |
missense |
probably damaging |
1.00 |
R7733:Vmn2r59
|
UTSW |
7 |
41,661,443 (GRCm39) |
missense |
probably benign |
0.17 |
R7770:Vmn2r59
|
UTSW |
7 |
41,708,336 (GRCm39) |
missense |
probably damaging |
1.00 |
R7812:Vmn2r59
|
UTSW |
7 |
41,695,196 (GRCm39) |
nonsense |
probably null |
|
R7867:Vmn2r59
|
UTSW |
7 |
41,661,707 (GRCm39) |
missense |
probably damaging |
1.00 |
R7975:Vmn2r59
|
UTSW |
7 |
41,693,199 (GRCm39) |
missense |
probably damaging |
1.00 |
R7999:Vmn2r59
|
UTSW |
7 |
41,696,256 (GRCm39) |
missense |
probably damaging |
1.00 |
R8267:Vmn2r59
|
UTSW |
7 |
41,661,521 (GRCm39) |
missense |
probably damaging |
0.97 |
R8367:Vmn2r59
|
UTSW |
7 |
41,661,247 (GRCm39) |
missense |
probably benign |
0.44 |
R9106:Vmn2r59
|
UTSW |
7 |
41,695,884 (GRCm39) |
missense |
probably benign |
0.03 |
R9135:Vmn2r59
|
UTSW |
7 |
41,693,127 (GRCm39) |
missense |
|
|
R9135:Vmn2r59
|
UTSW |
7 |
41,693,125 (GRCm39) |
missense |
probably benign |
0.33 |
R9234:Vmn2r59
|
UTSW |
7 |
41,661,907 (GRCm39) |
missense |
possibly damaging |
0.67 |
R9273:Vmn2r59
|
UTSW |
7 |
41,695,286 (GRCm39) |
nonsense |
probably null |
|
R9432:Vmn2r59
|
UTSW |
7 |
41,696,254 (GRCm39) |
missense |
probably damaging |
1.00 |
R9433:Vmn2r59
|
UTSW |
7 |
41,695,590 (GRCm39) |
missense |
probably damaging |
0.99 |
R9616:Vmn2r59
|
UTSW |
7 |
41,661,299 (GRCm39) |
missense |
probably damaging |
1.00 |
R9654:Vmn2r59
|
UTSW |
7 |
41,693,217 (GRCm39) |
missense |
probably benign |
0.10 |
R9741:Vmn2r59
|
UTSW |
7 |
41,708,209 (GRCm39) |
missense |
probably damaging |
0.99 |
X0025:Vmn2r59
|
UTSW |
7 |
41,695,365 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1088:Vmn2r59
|
UTSW |
7 |
41,661,838 (GRCm39) |
missense |
possibly damaging |
0.85 |
Z1176:Vmn2r59
|
UTSW |
7 |
41,691,941 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- CAGAAACTTGGCTTCATTGAAGG -3'
(R):5'- CACAATCACCTGCATCTTGC -3'
Sequencing Primer
(F):5'- CTTCATTGAAGGTGTCAGGAAGATTC -3'
(R):5'- GCATCTTGCAGCAGACAGC -3'
|
Posted On |
2015-10-21 |