Mutagenetix > Incidental Mutation

Incidental Mutation 'R4703:Inpp5a'

356212

Institutional Source

Beutler Lab

Gene Symbol

Inpp5a

Ensembl Gene

ENSMUSG00000025477

Gene Name

inositol polyphosphate-5-phosphatase A

Synonyms

MMRRC Submission

041951-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4703 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

138969025-139159568 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to C at 139138839 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Threonine at position 261 (N261T)

Ref Sequence

ENSEMBL: ENSMUSP00000101704 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026550] [ENSMUST00000097975] [ENSMUST00000106098]

AlphaFold

Q7TNC9

Predicted Effect

probably damaging
Transcript: ENSMUST00000026550
AA Change: N261T

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000026550
Gene: ENSMUSG00000025477
AA Change: N261T

Domain	Start	End	E-Value	Type
IPPc	8	400	2.48e-165	SMART
low complexity region	415	422	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000097975
AA Change: N269T

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000095589
Gene: ENSMUSG00000025477
AA Change: N269T

Domain	Start	End	E-Value	Type
IPPc	25	408	1.84e-150	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000106098
AA Change: N261T

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000101704
Gene: ENSMUSG00000025477
AA Change: N261T

Domain	Start	End	E-Value	Type
IPPc	8	400	2.48e-165	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152475

Meta Mutation Damage Score

0.2388

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.6%

Validation Efficiency

97% (98/101)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a membrane-associated type I inositol 1,4,5-trisphosphate (InsP3) 5-phosphatase. InsP3 5-phosphatases hydrolyze Ins(1,4,5)P3, which mobilizes intracellular calcium and acts as a second messenger mediating cell responses to various stimulation. [provided by RefSeq, Jul 2008]
PHENOTYPE: Most mice homozygous for a gene trapped allele show preweaning lethality, while surviving mice exhibit decreased body size, small cerebellum, and early-onset, slowly progressive Purkinje cell degeneration, gliosis, and ataxia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 89 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921517D22Rik	T	A	13: 59,837,342 (GRCm39)	T248S	possibly damaging	Het
AA986860	T	C	1: 130,671,092 (GRCm39)	V438A	probably benign	Het
Adam25	G	T	8: 41,207,163 (GRCm39)	C143F	probably damaging	Het
Aox1	T	A	1: 58,398,116 (GRCm39)	F1286I	possibly damaging	Het
Apobec4	A	G	1: 152,632,001 (GRCm39)	T10A	probably benign	Het
Arhgap5	C	T	12: 52,564,366 (GRCm39)	P446S	probably damaging	Het
Arhgef40	A	G	14: 52,239,767 (GRCm39)	N1327S	probably damaging	Het
Armc12	A	G	17: 28,751,336 (GRCm39)	D110G	probably benign	Het
Ascc1	A	G	10: 59,885,624 (GRCm39)	Y225C	probably damaging	Het
Aspscr1	A	T	11: 120,579,771 (GRCm39)	K39N	possibly damaging	Het
B4galnt1	G	T	10: 127,003,394 (GRCm39)	V172F	possibly damaging	Het
B4galt1	A	G	4: 40,823,569 (GRCm39)	V174A	probably benign	Het
Bcl11a	C	A	11: 24,113,725 (GRCm39)	A356E	possibly damaging	Het
Bri3bp	C	T	5: 125,528,830 (GRCm39)	L110F	probably damaging	Het
Cacna1b	T	C	2: 24,544,475 (GRCm39)	D1231G	probably damaging	Het
Ccdc33	T	A	9: 57,940,953 (GRCm39)	I430F	possibly damaging	Het
Cgn	A	G	3: 94,683,405 (GRCm39)		probably benign	Het
Crbn	T	A	6: 106,759,883 (GRCm39)	I317F	possibly damaging	Het
Cyp2d22	A	C	15: 82,260,118 (GRCm39)	L22R	probably damaging	Het
Dnah7a	C	T	1: 53,486,476 (GRCm39)		probably null	Het
Dnajc12	A	G	10: 63,222,429 (GRCm39)		probably null	Het
Dntt	T	A	19: 41,028,242 (GRCm39)	D179E	probably benign	Het
Enam	T	A	5: 88,651,650 (GRCm39)	L1053*	probably null	Het
Epn1	T	A	7: 5,098,147 (GRCm39)	D319E	probably damaging	Het
Evpl	C	G	11: 116,113,331 (GRCm39)	R1453P	probably damaging	Het
Focad	T	A	4: 88,260,558 (GRCm39)		probably null	Het
Foxp2	A	T	6: 15,411,247 (GRCm39)	M542L	probably benign	Het
Gak	T	A	5: 108,717,743 (GRCm39)	Q1299L	probably damaging	Het
Galnt5	G	T	2: 57,888,919 (GRCm39)	R173I	possibly damaging	Het
Gli1	G	T	10: 127,166,724 (GRCm39)	P843Q	possibly damaging	Het
Gm5422	G	T	10: 31,125,608 (GRCm39)		noncoding transcript	Het
Gna14	T	G	19: 16,576,344 (GRCm39)	V117G	possibly damaging	Het
Gpr6	T	C	10: 40,947,037 (GRCm39)	T182A	probably damaging	Het
Ifi204	C	A	1: 173,587,927 (GRCm39)		probably benign	Het
Ifih1	A	T	2: 62,429,220 (GRCm39)	L906H	probably benign	Het
Ift88	A	G	14: 57,718,307 (GRCm39)		probably benign	Het
Ighd	A	G	12: 113,379,661 (GRCm39)		probably benign	Het
Ighv11-1	A	C	12: 113,945,622 (GRCm39)	I77R	possibly damaging	Het
Il22	A	T	10: 118,041,511 (GRCm39)	I75F	probably damaging	Het
Il23r	A	T	6: 67,467,686 (GRCm39)	I27K	probably damaging	Het
Ints8	T	G	4: 11,223,785 (GRCm39)	Q686P	possibly damaging	Het
Iqcf4	T	C	9: 106,445,519 (GRCm39)		probably null	Het
Irf2bp1	C	T	7: 18,739,496 (GRCm39)	R379C	possibly damaging	Het
Iws1	C	T	18: 32,213,066 (GRCm39)	P165S	probably benign	Het
Kalrn	T	C	16: 34,024,327 (GRCm39)	D610G	probably damaging	Het
Kcna10	A	T	3: 107,101,926 (GRCm39)	I186F	probably benign	Het
Limk2	C	A	11: 3,297,586 (GRCm39)	E329*	probably null	Het
Nadk	C	A	4: 155,669,684 (GRCm39)	P157T	probably benign	Het
Notch1	T	G	2: 26,361,170 (GRCm39)	K1107Q	probably benign	Het
Nsd1	T	A	13: 55,361,876 (GRCm39)	D281E	probably damaging	Het
Obi1	A	G	14: 104,743,644 (GRCm39)	L145P	probably benign	Het
Olfml2a	T	A	2: 38,841,250 (GRCm39)	L262Q	probably damaging	Het
Or1ab2	T	A	8: 72,864,044 (GRCm39)	F211L	probably damaging	Het
Or4k44	T	A	2: 111,368,113 (GRCm39)	I174L	probably benign	Het
Or51d1	A	T	7: 102,347,477 (GRCm39)	T11S	probably benign	Het
Or6k6	A	G	1: 173,944,964 (GRCm39)	I206T	possibly damaging	Het
Or7c19	A	G	8: 85,957,237 (GRCm39)	T38A	possibly damaging	Het
Otogl	A	C	10: 107,657,785 (GRCm39)	D1048E	probably damaging	Het
Oxnad1	T	C	14: 31,817,427 (GRCm39)	W96R	probably damaging	Het
Pcdh15	A	T	10: 74,285,995 (GRCm39)	D743V	probably damaging	Het
Pclo	A	G	5: 14,726,494 (GRCm39)		probably benign	Het
Pcnx1	C	T	12: 81,941,938 (GRCm39)	T112I	probably benign	Het
Pctp	T	C	11: 89,878,099 (GRCm39)	E145G	possibly damaging	Het
Pip5k1b	T	C	19: 24,332,517 (GRCm39)	K389R	probably damaging	Het
Pla2g15	T	A	8: 106,889,691 (GRCm39)	M321K	probably benign	Het
Pnlip	T	A	19: 58,664,899 (GRCm39)	D242E	probably damaging	Het
Ptpn21	T	C	12: 98,645,651 (GRCm39)	T1096A	probably benign	Het
Rims3	A	T	4: 120,740,494 (GRCm39)		probably benign	Het
Scfd2	T	A	5: 74,680,256 (GRCm39)	Q299L	probably benign	Het
Selplg	T	C	5: 113,957,094 (GRCm39)	D404G	probably benign	Het
Slc15a5	T	C	6: 138,032,643 (GRCm39)	D237G	probably benign	Het
Slc16a12	T	A	19: 34,652,291 (GRCm39)	H285L	possibly damaging	Het
Sox2	C	A	3: 34,704,862 (GRCm39)	R100S	probably damaging	Het
Sspo	G	A	6: 48,477,387 (GRCm39)	C4969Y	probably damaging	Het
Stxbp2	A	G	8: 3,682,521 (GRCm39)	S37G	probably damaging	Het
Tbxas1	T	C	6: 39,060,791 (GRCm39)		probably null	Het
Tcf4	A	G	18: 69,790,981 (GRCm39)	Y307C	probably damaging	Het
Thsd7b	A	T	1: 129,977,646 (GRCm39)		probably benign	Het
Tnn	G	T	1: 159,943,815 (GRCm39)	D999E	possibly damaging	Het
Trmt13	C	A	3: 116,388,247 (GRCm39)	W63L	probably benign	Het
Tsc2	T	C	17: 24,823,883 (GRCm39)	N915S	probably benign	Het
Tyrp1	T	A	4: 80,759,043 (GRCm39)		probably null	Het
Uvrag	A	T	7: 98,638,794 (GRCm39)	I315N	probably damaging	Het
Vmn1r31	C	A	6: 58,448,953 (GRCm39)	*304L	probably null	Het
Vmn2r59	T	A	7: 41,661,686 (GRCm39)	I710L	probably benign	Het
Vmn2r82	A	T	10: 79,214,641 (GRCm39)	H208L	probably damaging	Het
Wtap	T	C	17: 13,199,711 (GRCm39)	T91A	probably benign	Het
Xirp1	A	T	9: 119,846,093 (GRCm39)	V930E	probably damaging	Het
Xpo4	T	G	14: 57,827,565 (GRCm39)	H877P	probably benign	Het

Other mutations in Inpp5a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00913:Inpp5a	APN	7	139,096,637 (GRCm39)	missense	probably benign	0.00
IGL01354:Inpp5a	APN	7	139,118,150 (GRCm39)	missense	probably damaging	0.99
IGL01734:Inpp5a	APN	7	139,034,006 (GRCm39)	missense	possibly damaging	0.92
IGL02536:Inpp5a	APN	7	139,147,338 (GRCm39)	missense	probably benign	0.17
IGL03023:Inpp5a	APN	7	139,105,702 (GRCm39)	splice site	probably null
IGL03390:Inpp5a	APN	7	139,105,664 (GRCm39)	missense	probably benign	0.01
Anza	UTSW	7	139,105,654 (GRCm39)	missense	probably damaging	1.00
borrego	UTSW	7	139,105,586 (GRCm39)	missense	probably damaging	1.00
Cervicalis	UTSW	7	139,061,634 (GRCm39)	missense	probably damaging	1.00
Joshua_tree	UTSW	7	139,154,898 (GRCm39)	missense	probably damaging	1.00
PIT4402001:Inpp5a	UTSW	7	139,091,369 (GRCm39)	missense	probably benign	0.02
R0724:Inpp5a	UTSW	7	139,096,579 (GRCm39)	missense	probably benign	0.08
R0940:Inpp5a	UTSW	7	139,105,654 (GRCm39)	missense	probably damaging	1.00
R1258:Inpp5a	UTSW	7	139,105,660 (GRCm39)	missense	probably damaging	1.00
R2112:Inpp5a	UTSW	7	139,154,877 (GRCm39)	missense	probably damaging	0.99
R2328:Inpp5a	UTSW	7	139,058,010 (GRCm39)	nonsense	probably null
R4223:Inpp5a	UTSW	7	139,138,821 (GRCm39)	missense	possibly damaging	0.72
R4307:Inpp5a	UTSW	7	139,154,879 (GRCm39)	missense	possibly damaging	0.87
R4781:Inpp5a	UTSW	7	139,057,921 (GRCm39)	missense	probably benign	0.11
R4997:Inpp5a	UTSW	7	138,980,654 (GRCm39)	missense	probably benign	0.07
R5762:Inpp5a	UTSW	7	139,118,097 (GRCm39)	missense	possibly damaging	0.95
R6014:Inpp5a	UTSW	7	139,154,898 (GRCm39)	missense	probably damaging	1.00
R6381:Inpp5a	UTSW	7	138,980,589 (GRCm39)	missense	probably benign	0.00
R7255:Inpp5a	UTSW	7	139,091,364 (GRCm39)	missense	probably damaging	0.96
R7324:Inpp5a	UTSW	7	139,105,586 (GRCm39)	missense	probably damaging	1.00
R7362:Inpp5a	UTSW	7	139,158,296 (GRCm39)	missense	probably benign	0.00
R7561:Inpp5a	UTSW	7	139,147,338 (GRCm39)	missense	probably damaging	0.99
R7748:Inpp5a	UTSW	7	139,154,911 (GRCm39)	missense	probably damaging	0.96
R8178:Inpp5a	UTSW	7	139,118,153 (GRCm39)	missense	probably damaging	1.00
R8253:Inpp5a	UTSW	7	139,061,556 (GRCm39)	missense	probably damaging	0.99
R8839:Inpp5a	UTSW	7	138,969,349 (GRCm39)	missense	probably benign	0.07
R9242:Inpp5a	UTSW	7	139,061,634 (GRCm39)	missense	probably damaging	1.00
R9340:Inpp5a	UTSW	7	138,969,380 (GRCm39)	missense	probably benign	0.00
Z1177:Inpp5a	UTSW	7	139,105,691 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GATGTGAATCCTCTGTGTCCG -3'
(R):5'- GTTGTTGTCCCGGAAGACATC -3'

Sequencing Primer
(F):5'- GAATCCTCTGTGTCCGTCTGC -3'
(R):5'- AGACATCCTGGTTGAAGTAGTC -3'

Posted On

2015-10-21