Mutagenetix > Incidental Mutation

Incidental Mutation 'R4763:Pi4kb'

357012

Institutional Source

Beutler Lab

Gene Symbol

Pi4kb

Ensembl Gene

ENSMUSG00000038861

Gene Name

phosphatidylinositol 4-kinase beta

Synonyms

Pik4cb, ESTM41

MMRRC Submission

042404-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.966) question?

Stock #

R4763 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

94882042-94914154 bp(+) (GRCm39)

Type of Mutation

intron

DNA Base Change (assembly)

G to T at 94911720 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000132150 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000019482] [ENSMUST00000072287] [ENSMUST00000107251] [ENSMUST00000125476] [ENSMUST00000133297] [ENSMUST00000137799] [ENSMUST00000167008]

AlphaFold

Q8BKC8

Predicted Effect

probably benign
Transcript: ENSMUST00000019482

SMART Domains

Protein: ENSMUSP00000019482
Gene: ENSMUSG00000019338

Domain	Start	End	E-Value	Type
low complexity region	30	45	N/A	INTRINSIC
low complexity region	170	186	N/A	INTRINSIC
low complexity region	296	306	N/A	INTRINSIC
low complexity region	312	325	N/A	INTRINSIC
ZnF_C2H2	533	553	4.74e1	SMART
ZnF_C2H2	561	585	1.43e1	SMART
low complexity region	615	634	N/A	INTRINSIC
low complexity region	639	667	N/A	INTRINSIC
ZnF_C2H2	673	693	7.37e1	SMART
ZnF_C2H2	705	727	1.99e0	SMART
ZnF_C2H2	733	757	3.38e1	SMART
ZnF_C2H2	764	787	2.67e-1	SMART
ZnF_C2H2	792	815	4.4e-2	SMART
ZnF_C2H2	827	849	7.67e-2	SMART
ZnF_C2H2	858	881	2.36e-2	SMART
low complexity region	884	898	N/A	INTRINSIC
low complexity region	914	938	N/A	INTRINSIC
ZnF_C2H2	964	987	4.05e-1	SMART
ZnF_C2H2	994	1017	1.38e-3	SMART
ZnF_C2H2	1024	1050	4.65e-1	SMART
low complexity region	1057	1075	N/A	INTRINSIC
low complexity region	1100	1114	N/A	INTRINSIC
ZnF_C2H2	1135	1158	4.98e-1	SMART
ZnF_C2H2	1200	1222	1.82e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000072287

SMART Domains

Protein: ENSMUSP00000072134
Gene: ENSMUSG00000038861

Domain	Start	End	E-Value	Type
low complexity region	10	31	N/A	INTRINSIC
SCOP:d1e8xa1	140	231	5e-22	SMART
PI3Kc	545	799	6.47e-105	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000107251

SMART Domains

Protein: ENSMUSP00000102872
Gene: ENSMUSG00000038861

Domain	Start	End	E-Value	Type
low complexity region	10	31	N/A	INTRINSIC
SCOP:d1e8xa1	140	231	5e-22	SMART
PI3Kc	560	814	6.47e-105	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000125476

SMART Domains

Protein: ENSMUSP00000121965
Gene: ENSMUSG00000038861

Domain	Start	End	E-Value	Type
low complexity region	22	43	N/A	INTRINSIC
SCOP:d1e8xa1	152	243	5e-22	SMART
PI3Kc	572	826	6.47e-105	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126222

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133166

Predicted Effect

probably benign
Transcript: ENSMUST00000133297

SMART Domains

Protein: ENSMUSP00000123529
Gene: ENSMUSG00000038861

Domain	Start	End	E-Value	Type
PI3Kc	1	225	7.13e-43	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133494

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143287

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000183540

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147022

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146169

Predicted Effect

probably benign
Transcript: ENSMUST00000137799

SMART Domains

Protein: ENSMUSP00000123335
Gene: ENSMUSG00000019338

Domain	Start	End	E-Value	Type
low complexity region	30	45	N/A	INTRINSIC
low complexity region	170	186	N/A	INTRINSIC
low complexity region	296	306	N/A	INTRINSIC
low complexity region	312	325	N/A	INTRINSIC
ZnF_C2H2	533	553	4.74e1	SMART
ZnF_C2H2	561	585	1.43e1	SMART
low complexity region	615	634	N/A	INTRINSIC
low complexity region	639	667	N/A	INTRINSIC
ZnF_C2H2	673	693	7.37e1	SMART
ZnF_C2H2	705	727	1.99e0	SMART
ZnF_C2H2	733	757	3.38e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000167008

SMART Domains

Protein: ENSMUSP00000132150
Gene: ENSMUSG00000038861

Domain	Start	End	E-Value	Type
PI3Kc	228	482	6.47e-105	SMART

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 96.9%
20x: 94.3%

Validation Efficiency

97% (73/75)

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610303G11Rik	A	G	9: 98,069,176 (GRCm39)		noncoding transcript	Het
Abhd2	A	G	7: 79,009,879 (GRCm39)	E418G	probably benign	Het
Acox2	G	T	14: 8,241,334 (GRCm38)	H593N	possibly damaging	Het
Adam17	A	G	12: 21,384,016 (GRCm39)	Y495H	probably benign	Het
Afg3l2	G	T	18: 67,554,329 (GRCm39)	L458M	probably damaging	Het
Arhgap44	A	G	11: 64,929,991 (GRCm39)	I240T	probably damaging	Het
Atp2c1	T	C	9: 105,295,766 (GRCm39)	T653A	probably damaging	Het
Atxn7l1	G	A	12: 33,408,877 (GRCm39)		probably benign	Het
Cacng8	T	C	7: 3,463,508 (GRCm39)	V220A	probably damaging	Het
Card14	A	T	11: 119,234,001 (GRCm39)	S864C	probably damaging	Het
Cfap58	C	T	19: 47,971,945 (GRCm39)	A625V	probably damaging	Het
Cfap61	T	C	2: 145,859,287 (GRCm39)	V425A	probably benign	Het
Cfap73	A	G	5: 120,768,294 (GRCm39)	F155L	probably damaging	Het
Cntrl	G	T	2: 35,065,563 (GRCm39)	R2235L	probably damaging	Het
Cxxc1	A	G	18: 74,352,484 (GRCm39)	K355E	probably damaging	Het
Disc1	G	A	8: 125,851,277 (GRCm39)	G387D	probably damaging	Het
Dpf2	T	C	19: 5,952,480 (GRCm39)	Y286C	probably damaging	Het
E2f7	A	T	10: 110,616,710 (GRCm39)	K650M	probably damaging	Het
Fbln2	C	T	6: 91,246,982 (GRCm39)	S1027F	probably damaging	Het
Foxj2	G	T	6: 122,810,230 (GRCm39)	Q196H	probably benign	Het
Gm6811	A	G	17: 21,314,109 (GRCm39)		noncoding transcript	Het
Gtf2i	T	C	5: 134,284,818 (GRCm39)	K409E	probably damaging	Het
Hamp	T	A	7: 30,641,989 (GRCm39)	R55S	probably damaging	Het
Heatr1	C	T	13: 12,445,811 (GRCm39)	T1596I	possibly damaging	Het
Hells	T	C	19: 38,945,643 (GRCm39)	V601A	probably damaging	Het
Ighv5-8	A	G	12: 113,617,161 (GRCm39)	S34P	probably damaging	Het
Lig4	T	C	8: 10,022,955 (GRCm39)	D275G	probably damaging	Het
Meak7	A	G	8: 120,495,122 (GRCm39)	V212A	probably benign	Het
Med6	T	C	12: 81,629,435 (GRCm39)	D59G	probably damaging	Het
Men1	T	C	19: 6,385,102 (GRCm39)		probably null	Het
Mlec	G	A	5: 115,295,972 (GRCm39)	A41V	unknown	Het
Ncoa1	G	A	12: 4,325,297 (GRCm39)	T927I	probably damaging	Het
Neb	T	A	2: 52,127,052 (GRCm39)	K378*	probably null	Het
Neb	T	A	2: 52,216,732 (GRCm39)	K148*	probably null	Het
Or4b13	T	A	2: 90,082,807 (GRCm39)	Y175F	probably damaging	Het
Or4k41	T	A	2: 111,280,023 (GRCm39)	C179*	probably null	Het
Or5p73	G	A	7: 108,065,393 (GRCm39)	M287I	probably benign	Het
Or8g26	A	G	9: 39,096,256 (GRCm39)	T261A	probably benign	Het
Parp10	C	T	15: 76,117,627 (GRCm39)	V920M	probably damaging	Het
Parp6	C	A	9: 59,538,648 (GRCm39)	P241H	probably damaging	Het
Pcyox1l	A	G	18: 61,830,850 (GRCm39)	Y341H	probably benign	Het
Pfas	A	T	11: 68,881,020 (GRCm39)	D1080E	possibly damaging	Het
Piwil2	C	T	14: 70,614,227 (GRCm39)	V846M	probably damaging	Het
Pkd1l2	A	G	8: 117,746,168 (GRCm39)	F1941L	probably damaging	Het
Pot1b	G	A	17: 56,002,160 (GRCm39)	T138M	possibly damaging	Het
Ppp4r1	T	C	17: 66,142,105 (GRCm39)	I720T	possibly damaging	Het
Prr12	A	G	7: 44,697,119 (GRCm39)	L932S	unknown	Het
Rnaseh2a	T	A	8: 85,692,021 (GRCm39)	E84V	probably benign	Het
Rpl18a	G	A	8: 71,348,330 (GRCm39)	R118C	probably benign	Het
Rprm	C	A	2: 53,975,228 (GRCm39)	C30F	possibly damaging	Het
Sbf2	G	T	7: 110,020,124 (GRCm39)	L579I	probably damaging	Het
Sfn	C	A	4: 133,328,656 (GRCm39)	R142L	probably benign	Het
St8sia6	T	C	2: 13,677,341 (GRCm39)	K159E	probably damaging	Het
Sugct	A	T	13: 17,837,372 (GRCm39)	F86L	probably damaging	Het
Tmcc3	T	C	10: 94,415,173 (GRCm39)	S292P	probably damaging	Het
Tmem33	A	T	5: 67,443,479 (GRCm39)	I219F	probably benign	Het
Trav8-1	C	A	14: 53,707,492 (GRCm39)	T44K	possibly damaging	Het
U2surp	A	G	9: 95,393,844 (GRCm39)		probably benign	Het
Use1	T	C	8: 71,819,952 (GRCm39)	L25P	probably damaging	Het
Vmn1r221	G	T	13: 23,401,958 (GRCm39)		noncoding transcript	Het
Vmn1r50	C	T	6: 90,085,062 (GRCm39)	T269I	probably benign	Het
Washc3	A	G	10: 88,055,185 (GRCm39)	D125G	probably damaging	Het
Zfp142	G	A	1: 74,615,671 (GRCm39)	H278Y	probably damaging	Het
Zfp418	A	G	7: 7,184,444 (GRCm39)	N136D	possibly damaging	Het

Other mutations in Pi4kb

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00424:Pi4kb	APN	3	94,911,574 (GRCm39)	missense	probably damaging	1.00
IGL01559:Pi4kb	APN	3	94,891,440 (GRCm39)	missense	probably benign	0.00
IGL03003:Pi4kb	APN	3	94,892,123 (GRCm39)	missense	probably benign	0.00
IGL03087:Pi4kb	APN	3	94,892,075 (GRCm39)	missense	probably benign
R0014:Pi4kb	UTSW	3	94,906,208 (GRCm39)	missense	probably damaging	1.00
R0196:Pi4kb	UTSW	3	94,906,261 (GRCm39)	missense	probably damaging	1.00
R0387:Pi4kb	UTSW	3	94,892,051 (GRCm39)	missense	probably benign	0.42
R0394:Pi4kb	UTSW	3	94,904,116 (GRCm39)	intron	probably benign
R0394:Pi4kb	UTSW	3	94,904,115 (GRCm39)	intron	probably benign
R1485:Pi4kb	UTSW	3	94,901,698 (GRCm39)	missense	probably damaging	0.99
R3700:Pi4kb	UTSW	3	94,901,599 (GRCm39)	missense	probably benign	0.09
R4449:Pi4kb	UTSW	3	94,892,046 (GRCm39)	missense	probably benign	0.41
R4502:Pi4kb	UTSW	3	94,903,918 (GRCm39)	missense	probably benign	0.02
R4717:Pi4kb	UTSW	3	94,906,162 (GRCm39)	missense	probably damaging	1.00
R4737:Pi4kb	UTSW	3	94,911,649 (GRCm39)	missense	probably damaging	1.00
R5322:Pi4kb	UTSW	3	94,901,560 (GRCm39)	missense	probably benign	0.04
R5427:Pi4kb	UTSW	3	94,901,518 (GRCm39)	missense	probably benign	0.09
R5622:Pi4kb	UTSW	3	94,906,172 (GRCm39)	missense	possibly damaging	0.56
R5625:Pi4kb	UTSW	3	94,891,988 (GRCm39)	missense	probably benign	0.15
R5755:Pi4kb	UTSW	3	94,901,608 (GRCm39)	splice site	probably null
R5926:Pi4kb	UTSW	3	94,906,307 (GRCm39)	missense	probably damaging	1.00
R6904:Pi4kb	UTSW	3	94,900,461 (GRCm39)	missense	probably damaging	1.00
R6984:Pi4kb	UTSW	3	94,904,245 (GRCm39)	missense	probably damaging	1.00
R7221:Pi4kb	UTSW	3	94,901,500 (GRCm39)	missense	probably damaging	1.00
R7312:Pi4kb	UTSW	3	94,891,888 (GRCm39)	missense	probably benign	0.12
R7511:Pi4kb	UTSW	3	94,896,623 (GRCm39)	missense	probably benign	0.00
R7571:Pi4kb	UTSW	3	94,906,425 (GRCm39)	critical splice donor site	probably null
R7885:Pi4kb	UTSW	3	94,906,387 (GRCm39)	missense	probably damaging	1.00
R8327:Pi4kb	UTSW	3	94,906,192 (GRCm39)	missense	probably benign	0.02
R8331:Pi4kb	UTSW	3	94,903,995 (GRCm39)	missense	probably null	0.99
R8829:Pi4kb	UTSW	3	94,900,344 (GRCm39)	missense	probably damaging	0.99
R8832:Pi4kb	UTSW	3	94,900,344 (GRCm39)	missense	probably damaging	0.99
R9047:Pi4kb	UTSW	3	94,900,428 (GRCm39)	missense	probably damaging	1.00
R9255:Pi4kb	UTSW	3	94,906,219 (GRCm39)	missense	probably damaging	1.00
R9269:Pi4kb	UTSW	3	94,891,797 (GRCm39)	missense	probably damaging	1.00
R9326:Pi4kb	UTSW	3	94,900,506 (GRCm39)	critical splice donor site	probably null
Z1088:Pi4kb	UTSW	3	94,891,820 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTGTAGCTTGAGATCCAGCC -3'
(R):5'- GTCCTTTCTGTAGGCCTCAGAG -3'

Sequencing Primer
(F):5'- TGTAGCTTGAGATCCAGCCTAAGC -3'
(R):5'- AGCTTCCTCTCTTAAGGTAATCATGG -3'

Posted On

2015-11-11