Incidental Mutation 'R4741:Brpf3'
ID 358105
Institutional Source Beutler Lab
Gene Symbol Brpf3
Ensembl Gene ENSMUSG00000063952
Gene Name bromodomain and PHD finger containing, 3
Synonyms
MMRRC Submission 042026-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.459) question?
Stock # R4741 (G1)
Quality Score 215
Status Not validated
Chromosome 17
Chromosomal Location 29020088-29057763 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 29036758 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Phenylalanine to Serine at position 721 (F721S)
Ref Sequence ENSEMBL: ENSMUSP00000004985 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000004985]
AlphaFold B2KF05
Predicted Effect possibly damaging
Transcript: ENSMUST00000004985
AA Change: F721S

PolyPhen 2 Score 0.505 (Sensitivity: 0.88; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000004985
Gene: ENSMUSG00000063952
AA Change: F721S

DomainStartEndE-ValueType
Pfam:EPL1 48 194 8.4e-38 PFAM
PHD 214 260 7.07e-5 SMART
PHD 324 387 4.74e-6 SMART
low complexity region 405 436 N/A INTRINSIC
Blast:BROMO 491 534 7e-21 BLAST
low complexity region 558 577 N/A INTRINSIC
BROMO 586 694 4.93e-39 SMART
low complexity region 777 792 N/A INTRINSIC
low complexity region 813 823 N/A INTRINSIC
PWWP 1073 1156 2.07e-38 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000123942
Predicted Effect noncoding transcript
Transcript: ENSMUST00000126868
Predicted Effect noncoding transcript
Transcript: ENSMUST00000144022
Predicted Effect noncoding transcript
Transcript: ENSMUST00000148149
Predicted Effect noncoding transcript
Transcript: ENSMUST00000156029
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.8%
  • 20x: 94.1%
Validation Efficiency
MGI Phenotype PHENOTYPE: Homozygous knockout does not result in any obvious neurological, behavioral, developmental, histological, hematological, survival or reproductive phenotype. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 52 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Angptl2 T C 2: 33,136,200 (GRCm39) Y462H probably benign Het
Arhgef12 A G 9: 42,883,449 (GRCm39) I1360T possibly damaging Het
Armc10 T G 5: 21,856,834 (GRCm39) L111R probably damaging Het
Atm T C 9: 53,364,907 (GRCm39) K2628E probably benign Het
Best3 A T 10: 116,859,901 (GRCm39) N387I probably benign Het
Bltp1 A G 3: 36,996,524 (GRCm39) T1079A probably damaging Het
Cacna1c A G 6: 118,590,271 (GRCm39) S1411P probably damaging Het
Cldn8 G A 16: 88,359,296 (GRCm39) H210Y probably benign Het
Clip2 T A 5: 134,545,123 (GRCm39) T344S probably benign Het
Csmd1 A C 8: 15,960,447 (GRCm39) W3323G probably damaging Het
Doc2a A T 7: 126,450,617 (GRCm39) T298S possibly damaging Het
Dpp9 T C 17: 56,512,286 (GRCm39) N234S probably benign Het
Dtx2 C T 5: 136,055,371 (GRCm39) R353C probably benign Het
Epm2aip1 A G 9: 111,101,681 (GRCm39) H218R probably benign Het
F2rl1 G A 13: 95,650,651 (GRCm39) T77M probably damaging Het
Fsd2 A G 7: 81,201,643 (GRCm39) probably null Het
Grin2a T C 16: 9,481,376 (GRCm39) Y475C probably damaging Het
H2-Ob T A 17: 34,461,545 (GRCm39) S95T possibly damaging Het
Hddc3 A G 7: 79,995,464 (GRCm39) T160A probably benign Het
Hp A T 8: 110,302,104 (GRCm39) C281* probably null Het
Ighg1 T C 12: 113,290,178 (GRCm39) probably benign Het
Ints7 A G 1: 191,351,747 (GRCm39) I819V probably benign Het
Jam2 G A 16: 84,609,840 (GRCm39) V151M probably damaging Het
Jmjd1c A G 10: 67,060,718 (GRCm39) I737V possibly damaging Het
Krt74 C T 15: 101,669,876 (GRCm39) noncoding transcript Het
Lnpep T C 17: 17,791,920 (GRCm39) Y407C probably damaging Het
Lrp4 T G 2: 91,341,912 (GRCm39) C1842G probably damaging Het
Mug2 T A 6: 122,056,572 (GRCm39) N1172K probably benign Het
Npy6r A T 18: 44,408,791 (GRCm39) T71S probably damaging Het
Nsd3 A T 8: 26,163,382 (GRCm39) I591F probably damaging Het
Oog2 A C 4: 143,921,715 (GRCm39) E208D possibly damaging Het
Otogl A G 10: 107,615,121 (GRCm39) I1928T probably benign Het
Papss1 T C 3: 131,324,860 (GRCm39) L418P probably damaging Het
Pcdhb13 T A 18: 37,576,571 (GRCm39) D316E probably benign Het
Pcdhgb2 T A 18: 37,824,737 (GRCm39) probably null Het
Ptcd3 T A 6: 71,879,933 (GRCm39) L108F probably damaging Het
Ralgps1 T C 2: 33,226,599 (GRCm39) S31G probably benign Het
Rnf225 A T 7: 12,661,857 (GRCm39) H12L probably benign Het
Ryr3 T A 2: 112,633,613 (GRCm39) M2047L probably damaging Het
Secisbp2l C T 2: 125,582,657 (GRCm39) G933D possibly damaging Het
Serpinb3b G T 1: 107,082,200 (GRCm39) Q355K probably benign Het
Slc8a2 T A 7: 15,868,233 (GRCm39) F155Y probably damaging Het
Taf1c A G 8: 120,330,134 (GRCm39) probably benign Het
Tln2 A G 9: 67,293,837 (GRCm39) probably null Het
Tmpo A G 10: 90,998,506 (GRCm39) V427A probably benign Het
Vmn1r17 A T 6: 57,338,337 (GRCm39) Y9* probably null Het
Vmn2r63 C T 7: 42,577,544 (GRCm39) M331I probably benign Het
Zdhhc1 CGGGGG CGGGGGG 8: 106,210,376 (GRCm39) probably null Het
Zfand5 C T 19: 21,253,845 (GRCm39) T16I probably damaging Het
Zfp352 A T 4: 90,113,177 (GRCm39) K439M possibly damaging Het
Zfp786 G A 6: 47,797,625 (GRCm39) H438Y probably damaging Het
Zfp808 T A 13: 62,319,763 (GRCm39) C331S probably damaging Het
Other mutations in Brpf3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00906:Brpf3 APN 17 29,055,674 (GRCm39) utr 3 prime probably benign
IGL01397:Brpf3 APN 17 29,036,606 (GRCm39) missense probably benign 0.22
IGL01608:Brpf3 APN 17 29,040,491 (GRCm39) missense probably benign 0.00
IGL02073:Brpf3 APN 17 29,026,370 (GRCm39) missense probably benign
IGL02540:Brpf3 APN 17 29,047,328 (GRCm39) missense probably damaging 1.00
IGL02838:Brpf3 APN 17 29,054,758 (GRCm39) missense probably benign 0.19
IGL02888:Brpf3 APN 17 29,047,365 (GRCm39) missense probably damaging 1.00
IGL02969:Brpf3 APN 17 29,040,279 (GRCm39) missense probably benign 0.05
IGL03036:Brpf3 APN 17 29,043,022 (GRCm39) missense possibly damaging 0.89
IGL03084:Brpf3 APN 17 29,054,751 (GRCm39) missense probably damaging 0.98
R0448:Brpf3 UTSW 17 29,025,010 (GRCm39) missense probably benign 0.10
R0898:Brpf3 UTSW 17 29,025,964 (GRCm39) missense possibly damaging 0.65
R1268:Brpf3 UTSW 17 29,055,530 (GRCm39) missense probably damaging 0.98
R1639:Brpf3 UTSW 17 29,043,042 (GRCm39) critical splice donor site probably null
R1754:Brpf3 UTSW 17 29,040,297 (GRCm39) missense probably benign 0.00
R1867:Brpf3 UTSW 17 29,026,342 (GRCm39) missense probably benign
R1954:Brpf3 UTSW 17 29,025,533 (GRCm39) missense probably benign
R2000:Brpf3 UTSW 17 29,040,531 (GRCm39) missense probably benign 0.20
R2064:Brpf3 UTSW 17 29,040,338 (GRCm39) missense probably benign
R2209:Brpf3 UTSW 17 29,047,394 (GRCm39) missense probably damaging 0.98
R2413:Brpf3 UTSW 17 29,024,924 (GRCm39) start gained probably benign
R3977:Brpf3 UTSW 17 29,026,016 (GRCm39) missense possibly damaging 0.49
R4067:Brpf3 UTSW 17 29,040,233 (GRCm39) missense probably benign
R4291:Brpf3 UTSW 17 29,042,949 (GRCm39) missense probably benign 0.00
R4369:Brpf3 UTSW 17 29,055,594 (GRCm39) missense probably damaging 1.00
R4371:Brpf3 UTSW 17 29,055,594 (GRCm39) missense probably damaging 1.00
R4773:Brpf3 UTSW 17 29,040,233 (GRCm39) missense probably benign 0.00
R4824:Brpf3 UTSW 17 29,025,460 (GRCm39) missense probably benign
R5360:Brpf3 UTSW 17 29,029,536 (GRCm39) missense probably benign
R5923:Brpf3 UTSW 17 29,025,610 (GRCm39) missense possibly damaging 0.90
R6181:Brpf3 UTSW 17 29,029,555 (GRCm39) missense probably damaging 1.00
R6278:Brpf3 UTSW 17 29,040,258 (GRCm39) missense probably benign 0.00
R6702:Brpf3 UTSW 17 29,029,633 (GRCm39) missense probably benign 0.01
R6884:Brpf3 UTSW 17 29,050,324 (GRCm39) missense probably benign 0.03
R6920:Brpf3 UTSW 17 29,042,970 (GRCm39) missense probably benign 0.34
R6976:Brpf3 UTSW 17 29,054,751 (GRCm39) missense probably damaging 0.98
R7099:Brpf3 UTSW 17 29,025,611 (GRCm39) missense probably benign 0.06
R7108:Brpf3 UTSW 17 29,036,099 (GRCm39) missense probably benign 0.01
R7193:Brpf3 UTSW 17 29,055,665 (GRCm39) makesense probably null
R7316:Brpf3 UTSW 17 29,033,660 (GRCm39) missense probably damaging 1.00
R7326:Brpf3 UTSW 17 29,025,267 (GRCm39) missense probably benign 0.00
R7403:Brpf3 UTSW 17 29,040,330 (GRCm39) missense probably benign
R7666:Brpf3 UTSW 17 29,029,546 (GRCm39) missense possibly damaging 0.83
R7686:Brpf3 UTSW 17 29,025,908 (GRCm39) missense probably damaging 0.98
R7691:Brpf3 UTSW 17 29,025,805 (GRCm39) missense probably damaging 1.00
R8054:Brpf3 UTSW 17 29,055,571 (GRCm39) missense probably damaging 1.00
R8165:Brpf3 UTSW 17 29,025,248 (GRCm39) missense probably benign 0.01
R8200:Brpf3 UTSW 17 29,025,248 (GRCm39) missense probably benign 0.01
R8698:Brpf3 UTSW 17 29,037,436 (GRCm39) missense probably damaging 0.99
R8722:Brpf3 UTSW 17 29,029,510 (GRCm39) missense probably benign 0.42
R8738:Brpf3 UTSW 17 29,040,214 (GRCm39) missense probably benign
R9044:Brpf3 UTSW 17 29,025,871 (GRCm39) missense possibly damaging 0.90
R9250:Brpf3 UTSW 17 29,054,788 (GRCm39) missense probably damaging 1.00
R9349:Brpf3 UTSW 17 29,040,276 (GRCm39) missense probably benign 0.00
R9496:Brpf3 UTSW 17 29,040,453 (GRCm39) missense probably benign
R9564:Brpf3 UTSW 17 29,026,152 (GRCm39) missense probably benign
R9649:Brpf3 UTSW 17 29,037,597 (GRCm39) missense probably benign
R9720:Brpf3 UTSW 17 29,026,330 (GRCm39) missense probably benign 0.13
Z1177:Brpf3 UTSW 17 29,040,452 (GRCm39) missense probably benign
Predicted Primers PCR Primer
(F):5'- GGAGTTTGAGGAGGACTTTAACC -3'
(R):5'- CTGCAGGGATCCAGAAGATG -3'

Sequencing Primer
(F):5'- CCTTATAGTTACCAACTGCATGAAG -3'
(R):5'- GAGAGGCCTTGGCTTTCC -3'
Posted On 2015-11-11