Incidental Mutation 'IGL02809:Vmn1r72'
| ID |
360515 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Vmn1r72
|
| Ensembl Gene |
ENSMUSG00000095430 |
| Gene Name |
vomeronasal 1 receptor 72 |
| Synonyms |
V1rg1 |
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.055)
|
| Stock # |
IGL02809
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
7 |
| Chromosomal Location |
11403526-11404446 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 11403930 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Phenylalanine to Leucine
at position 173
(F173L)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000154511
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000053134]
[ENSMUST00000209638]
[ENSMUST00000227010]
|
| AlphaFold |
Q8K3N7 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000053134
AA Change: F173L
PolyPhen 2
Score 0.026 (Sensitivity: 0.95; Specificity: 0.81)
|
| SMART Domains |
Protein: ENSMUSP00000052997
Gene: ENSMUSG00000095430
AA Change: F173L
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:TAS2R
|
1 |
305 |
1.8e-9 |
PFAM |
|
Pfam:V1R
|
25 |
300 |
6.7e-26 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000209638
AA Change: F173L
PolyPhen 2
Score 0.026 (Sensitivity: 0.95; Specificity: 0.81)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000227010
AA Change: F173L
PolyPhen 2
Score 0.026 (Sensitivity: 0.95; Specificity: 0.81)
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 23 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Camkmt |
A |
T |
17: 85,702,076 (GRCm39) |
N180I |
probably damaging |
Het |
| Card9 |
A |
G |
2: 26,246,876 (GRCm39) |
M324T |
probably benign |
Het |
| Cenpf |
T |
C |
1: 189,414,555 (GRCm39) |
|
probably benign |
Het |
| Cerkl |
A |
G |
2: 79,172,546 (GRCm39) |
S349P |
possibly damaging |
Het |
| Ctsj |
C |
T |
13: 61,150,974 (GRCm39) |
S162N |
probably damaging |
Het |
| Fancm |
A |
G |
12: 65,168,441 (GRCm39) |
I1601M |
possibly damaging |
Het |
| Fpr-rs3 |
T |
A |
17: 20,844,225 (GRCm39) |
R305S |
probably damaging |
Het |
| Gpatch8 |
A |
G |
11: 102,378,416 (GRCm39) |
V178A |
unknown |
Het |
| Itga4 |
A |
G |
2: 79,110,921 (GRCm39) |
Y253C |
probably damaging |
Het |
| Kntc1 |
T |
C |
5: 123,914,645 (GRCm39) |
F655S |
probably damaging |
Het |
| Manba |
A |
G |
3: 135,253,321 (GRCm39) |
D414G |
probably damaging |
Het |
| Nfkbid |
C |
T |
7: 30,124,660 (GRCm39) |
T7I |
possibly damaging |
Het |
| Ngly1 |
G |
T |
14: 16,281,791 (GRCm38) |
C349F |
probably damaging |
Het |
| Palld |
T |
C |
8: 61,968,281 (GRCm39) |
N1095S |
probably damaging |
Het |
| Sp100 |
C |
T |
1: 85,608,845 (GRCm39) |
R325W |
probably damaging |
Het |
| Stxbp4 |
A |
G |
11: 90,491,010 (GRCm39) |
|
probably null |
Het |
| Tle2 |
C |
A |
10: 81,422,196 (GRCm39) |
|
probably null |
Het |
| Tlr13 |
G |
T |
X: 105,200,297 (GRCm39) |
|
probably benign |
Het |
| Ttc32 |
G |
A |
12: 9,085,879 (GRCm39) |
R142Q |
possibly damaging |
Het |
| Ubap2l |
G |
A |
3: 89,928,553 (GRCm39) |
T526M |
probably damaging |
Het |
| Uggt2 |
T |
C |
14: 119,328,150 (GRCm39) |
E124G |
probably benign |
Het |
| Xab2 |
T |
C |
8: 3,660,175 (GRCm39) |
S851G |
probably benign |
Het |
| Zfp808 |
A |
G |
13: 62,320,994 (GRCm39) |
K741R |
probably benign |
Het |
|
| Other mutations in Vmn1r72 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00885:Vmn1r72
|
APN |
7 |
11,404,424 (GRCm39) |
missense |
probably benign |
0.41 |
|
IGL02375:Vmn1r72
|
APN |
7 |
11,403,672 (GRCm39) |
missense |
probably benign |
0.10 |
|
IGL03104:Vmn1r72
|
APN |
7 |
11,403,812 (GRCm39) |
missense |
probably damaging |
1.00 |
|
3-1:Vmn1r72
|
UTSW |
7 |
11,403,825 (GRCm39) |
missense |
probably damaging |
0.97 |
|
IGL03014:Vmn1r72
|
UTSW |
7 |
11,403,711 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R0346:Vmn1r72
|
UTSW |
7 |
11,403,621 (GRCm39) |
missense |
probably benign |
|
|
R0524:Vmn1r72
|
UTSW |
7 |
11,403,719 (GRCm39) |
missense |
probably benign |
0.32 |
|
R1951:Vmn1r72
|
UTSW |
7 |
11,403,731 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1953:Vmn1r72
|
UTSW |
7 |
11,403,731 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2181:Vmn1r72
|
UTSW |
7 |
11,403,595 (GRCm39) |
nonsense |
probably null |
|
|
R4182:Vmn1r72
|
UTSW |
7 |
11,403,995 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4345:Vmn1r72
|
UTSW |
7 |
11,403,963 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R4496:Vmn1r72
|
UTSW |
7 |
11,403,791 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4999:Vmn1r72
|
UTSW |
7 |
11,404,300 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R5401:Vmn1r72
|
UTSW |
7 |
11,403,843 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5700:Vmn1r72
|
UTSW |
7 |
11,404,350 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R5754:Vmn1r72
|
UTSW |
7 |
11,403,776 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6292:Vmn1r72
|
UTSW |
7 |
11,403,579 (GRCm39) |
missense |
probably benign |
0.02 |
|
R6439:Vmn1r72
|
UTSW |
7 |
11,413,064 (GRCm39) |
splice site |
probably null |
|
|
R7616:Vmn1r72
|
UTSW |
7 |
11,404,272 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R7629:Vmn1r72
|
UTSW |
7 |
11,403,711 (GRCm39) |
missense |
probably benign |
|
|
R7737:Vmn1r72
|
UTSW |
7 |
11,403,634 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7819:Vmn1r72
|
UTSW |
7 |
11,403,552 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8358:Vmn1r72
|
UTSW |
7 |
11,404,310 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8797:Vmn1r72
|
UTSW |
7 |
11,403,965 (GRCm39) |
missense |
probably benign |
|
|
R8848:Vmn1r72
|
UTSW |
7 |
11,404,269 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8947:Vmn1r72
|
UTSW |
7 |
11,403,807 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R9010:Vmn1r72
|
UTSW |
7 |
11,404,145 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R9165:Vmn1r72
|
UTSW |
7 |
11,412,951 (GRCm39) |
intron |
probably benign |
|
|
R9578:Vmn1r72
|
UTSW |
7 |
11,404,347 (GRCm39) |
missense |
probably benign |
0.10 |
|
X0063:Vmn1r72
|
UTSW |
7 |
11,403,639 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1088:Vmn1r72
|
UTSW |
7 |
11,404,100 (GRCm39) |
missense |
probably benign |
0.03 |
|
| Posted On |
2015-12-18 |
Incidental Mutation