Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02869:Lsamp'

362484

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Lsamp

Ensembl Gene

ENSMUSG00000061080

Gene Name

limbic system-associated membrane protein

Synonyms

B130007O04Rik, D930023J12Rik, Lam, Lamp

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.136) question?

Stock #

IGL02869

Quality Score

Status

Chromosome

Chromosomal Location

39804723-42002042 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 41965078 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 312 (T312S)

Ref Sequence

ENSEMBL: ENSMUSP00000077913 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000078873] [ENSMUST00000099761] [ENSMUST00000187695]

AlphaFold

Q8BLK3

Predicted Effect

probably benign
Transcript: ENSMUST00000078873
AA Change: T312S

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000077913
Gene: ENSMUSG00000061080
AA Change: T312S

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
IG	38	129	1.81e-10	SMART
IGc2	144	204	3.7e-16	SMART
IGc2	230	297	2.12e-16	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000099761

SMART Domains

Protein: ENSMUSP00000097349
Gene: ENSMUSG00000061080

Domain	Start	End	E-Value	Type
low complexity region	12	28	N/A	INTRINSIC
IG	38	129	1.81e-10	SMART
IGc2	144	204	3.7e-16	SMART
IGc2	230	297	2.12e-16	SMART
transmembrane domain	313	335	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000133853

Predicted Effect

probably benign
Transcript: ENSMUST00000145951

SMART Domains

Protein: ENSMUSP00000115823
Gene: ENSMUSG00000061080

Domain	Start	End	E-Value	Type
IGc2	8	75	2.12e-16	SMART
transmembrane domain	114	136	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000187695

SMART Domains

Protein: ENSMUSP00000139667
Gene: ENSMUSG00000061080

Domain	Start	End	E-Value	Type
signal peptide	1	25	N/A	INTRINSIC
IG	55	146	7.6e-13	SMART
IGc2	161	221	1.5e-18	SMART
IGc2	247	314	8.6e-19	SMART
transmembrane domain	330	352	N/A	INTRINSIC

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the immunoglobulin LAMP, OBCAM and neurotrimin (IgLON) family of proteins. The encoded preproprotein is proteolytically processed to generate a neuronal surface glycoprotein. This protein may act as a selective homophilic adhesion molecule during axon guidance and neuronal growth in the developing limbic system. The encoded protein may also function as a tumor suppressor and may play a role in neuropsychiatric disorders. Alternative splicing results in multiple transcript variants, at least one of which encodes a preproprotein that is proteolytically processed. [provided by RefSeq, Jan 2016]
PHENOTYPE: Mice homozygous for mutations in this gene are hyperresponsive to novel environments. Mice homozygous for another knock-out allele exhibit reduced barbering, whisker trimming, anxiety, dominance, and aggression. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 95 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930562C15Rik	T	A	16: 4,685,323 (GRCm39)	S1142T	possibly damaging	Het
Aadacl4fm5	T	C	4: 144,512,938 (GRCm39)	I54V	probably benign	Het
Actr3b	T	G	5: 26,037,433 (GRCm39)	V215G	probably damaging	Het
Adam9	C	T	8: 25,460,634 (GRCm39)	V617M	probably damaging	Het
Adgrl2	G	T	3: 148,596,241 (GRCm39)	P32T	probably damaging	Het
Afg2a	G	T	3: 37,518,694 (GRCm39)	G743W	probably damaging	Het
Ago3	A	T	4: 126,261,580 (GRCm39)		probably benign	Het
Allc	A	C	12: 28,623,206 (GRCm39)	I20M	probably benign	Het
Asic3	G	A	5: 24,621,972 (GRCm39)	W361*	probably null	Het
Atf7ip	A	G	6: 136,583,577 (GRCm39)	K1203E	probably damaging	Het
Babam2	C	A	5: 32,162,116 (GRCm39)	H272Q	possibly damaging	Het
Baz2b	G	A	2: 59,807,872 (GRCm39)	T129I	probably benign	Het
C130073F10Rik	A	T	4: 101,747,590 (GRCm39)	Y146*	probably null	Het
Cd247	A	G	1: 165,684,986 (GRCm39)	E74G	probably damaging	Het
Cdh17	A	T	4: 11,814,908 (GRCm39)	Q778L	probably benign	Het
Ceacam1	T	C	7: 25,175,966 (GRCm39)	D76G	probably benign	Het
Cela3a	T	C	4: 137,131,145 (GRCm39)	K198E	probably benign	Het
Cemip2	T	A	19: 21,789,241 (GRCm39)	D558E	probably damaging	Het
Ces2a	T	A	8: 105,465,691 (GRCm39)	D281E	probably damaging	Het
Cetn2	A	T	X: 71,958,527 (GRCm39)	D116E	probably damaging	Het
Cracd	A	G	5: 77,006,890 (GRCm39)	K1084E	unknown	Het
Ctu2	G	T	8: 123,205,530 (GRCm39)		probably null	Het
Cybb	T	C	X: 9,308,828 (GRCm39)	N469D	probably benign	Het
Cygb	C	T	11: 116,540,749 (GRCm39)	R79Q	probably damaging	Het
Cyp2d10	C	T	15: 82,288,069 (GRCm39)	V186M	possibly damaging	Het
Defb29	T	A	2: 152,380,942 (GRCm39)		probably null	Het
Depdc7	T	G	2: 104,560,694 (GRCm39)	Q100P	probably damaging	Het
Dhx30	A	C	9: 109,926,251 (GRCm39)	I91R	probably damaging	Het
Dnm1l	T	A	16: 16,159,288 (GRCm39)	K105*	probably null	Het
Eddm13	T	C	7: 6,272,898 (GRCm39)		probably benign	Het
Efhc1	T	C	1: 21,037,567 (GRCm39)	I248T	probably damaging	Het
Elapor1	A	G	3: 108,380,182 (GRCm39)	I309T	probably benign	Het
Entpd2	A	G	2: 25,288,120 (GRCm39)	T115A	probably damaging	Het
Epb42	G	T	2: 120,856,227 (GRCm39)	A439E	probably benign	Het
Esm1	T	G	13: 113,346,618 (GRCm39)	L81R	probably damaging	Het
F8	T	C	X: 74,330,987 (GRCm39)	S968G	probably benign	Het
Fam234b	T	G	6: 135,202,201 (GRCm39)	Y308D	probably damaging	Het
Fbxo46	T	G	7: 18,871,139 (GRCm39)	V586G	probably damaging	Het
Foxp1	C	A	6: 98,907,044 (GRCm39)		probably benign	Het
Gm10754	A	T	10: 97,518,136 (GRCm39)		probably benign	Het
Gm12695	A	C	4: 96,650,370 (GRCm39)		probably benign	Het
Gm5468	T	C	15: 25,414,726 (GRCm39)		probably benign	Het
Grhl1	T	C	12: 24,631,490 (GRCm39)	S66P	probably damaging	Het
Gstt3	A	T	10: 75,612,576 (GRCm39)		probably null	Het
Gtf2i	A	G	5: 134,308,281 (GRCm39)		probably benign	Het
Gzmk	C	A	13: 113,308,560 (GRCm39)	G175C	probably damaging	Het
Helz2	T	C	2: 180,872,939 (GRCm39)		probably benign	Het
Ift20	T	C	11: 78,430,780 (GRCm39)		probably benign	Het
Intu	A	G	3: 40,642,216 (GRCm39)	D491G	probably damaging	Het
Itch	G	T	2: 155,015,853 (GRCm39)		probably null	Het
Itgb5	A	G	16: 33,665,362 (GRCm39)	N26S	possibly damaging	Het
Lama2	A	T	10: 26,891,534 (GRCm39)	S2526R	probably damaging	Het
Lat2	A	G	5: 134,637,027 (GRCm39)	I40T	probably damaging	Het
Lipa	T	A	19: 34,471,397 (GRCm39)	M393L	probably benign	Het
Lipa	G	T	19: 34,471,371 (GRCm39)		probably benign	Het
Lpcat1	T	A	13: 73,632,417 (GRCm39)	L10H	probably damaging	Het
Lpcat3	T	C	6: 124,679,970 (GRCm39)	Y348H	possibly damaging	Het
Lrp1b	A	T	2: 40,591,842 (GRCm39)	N50K	unknown	Het
Lrrk2	T	A	15: 91,634,480 (GRCm39)	Y1415N	probably damaging	Het
Man2a2	T	C	7: 80,013,689 (GRCm39)	E454G	probably benign	Het
Mcm3	T	C	1: 20,879,063 (GRCm39)	K570R	probably damaging	Het
Mctp2	C	A	7: 71,878,219 (GRCm39)		probably null	Het
Msantd2	T	G	9: 37,434,796 (GRCm39)	C345W	probably damaging	Het
Musk	T	C	4: 58,354,078 (GRCm39)	I362T	probably benign	Het
Myh15	A	T	16: 48,965,767 (GRCm39)	N1224I	probably benign	Het
Myo18a	A	G	11: 77,755,612 (GRCm39)	Y1983C	probably damaging	Het
Myo18a	C	T	11: 77,720,699 (GRCm39)		probably benign	Het
Myrfl	G	T	10: 116,664,909 (GRCm39)	Q374K	probably damaging	Het
Ndrg1	T	A	15: 66,818,346 (GRCm39)	Q87H	probably benign	Het
Nol9	G	A	4: 152,131,030 (GRCm39)	C351Y	probably damaging	Het
Nr5a1	A	G	2: 38,598,141 (GRCm39)	S219P	probably benign	Het
Or8b43	T	C	9: 38,360,489 (GRCm39)	F107S	possibly damaging	Het
Or8g28	A	T	9: 39,169,520 (GRCm39)	Y149*	probably null	Het
Pcdhb19	A	G	18: 37,631,690 (GRCm39)	D495G	probably damaging	Het
Pfkm	A	G	15: 98,026,123 (GRCm39)	M573V	probably damaging	Het
Plec	A	T	15: 76,065,516 (GRCm39)	L1586Q	probably damaging	Het
Prelp	C	A	1: 133,843,005 (GRCm39)	E47*	probably null	Het
Rbm33	T	A	5: 28,615,753 (GRCm39)	I32N	probably damaging	Het
Rgs12	A	T	5: 35,183,227 (GRCm39)	D310V	probably damaging	Het
Ripor2	A	C	13: 24,880,512 (GRCm39)	H404P	possibly damaging	Het
Sh3d21	T	C	4: 126,056,034 (GRCm39)	E124G	probably benign	Het
Shroom2	C	T	X: 151,442,549 (GRCm39)	S872N	probably benign	Het
Slc44a5	A	G	3: 153,956,651 (GRCm39)	Y301C	probably damaging	Het
Smap1	A	T	1: 23,930,995 (GRCm39)	H66Q	possibly damaging	Het
Smyd1	G	T	6: 71,198,007 (GRCm39)		probably benign	Het
Sptbn4	T	A	7: 27,093,573 (GRCm39)		probably benign	Het
Srsf3-ps	T	A	11: 98,516,146 (GRCm39)	R76*	probably null	Het
Stag3	A	G	5: 138,280,955 (GRCm39)	K49R	probably damaging	Het
Stim1	C	A	7: 101,917,758 (GRCm39)	A46E	unknown	Het
Stxbp2	A	T	8: 3,691,971 (GRCm39)	I538F	probably benign	Het
Tbc1d19	A	G	5: 53,992,559 (GRCm39)	T114A	probably benign	Het
Tln2	G	A	9: 67,128,807 (GRCm39)		probably benign	Het
Trmt10a	T	A	3: 137,857,945 (GRCm39)		probably null	Het
Vwde	G	A	6: 13,187,136 (GRCm39)	H784Y	probably damaging	Het
Zfp773	T	C	7: 7,137,232 (GRCm39)	T121A	probably benign	Het

Other mutations in Lsamp

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01665:Lsamp	APN	16	41,964,375 (GRCm39)	nonsense	probably null
R0930:Lsamp	UTSW	16	41,709,327 (GRCm39)	missense	probably benign	0.25
R1147:Lsamp	UTSW	16	41,994,499 (GRCm39)	splice site	probably benign
R1170:Lsamp	UTSW	16	41,971,592 (GRCm39)	intron	probably benign
R1649:Lsamp	UTSW	16	41,775,661 (GRCm39)	missense	probably benign	0.00
R1656:Lsamp	UTSW	16	41,775,682 (GRCm39)	missense	probably damaging	1.00
R1976:Lsamp	UTSW	16	41,709,430 (GRCm39)	missense	probably damaging	0.99
R3613:Lsamp	UTSW	16	41,775,686 (GRCm39)	missense	probably benign	0.03
R3732:Lsamp	UTSW	16	41,964,935 (GRCm39)	missense	probably damaging	1.00
R3734:Lsamp	UTSW	16	41,965,133 (GRCm39)	missense	probably benign
R3838:Lsamp	UTSW	16	41,954,675 (GRCm39)	missense	possibly damaging	0.54
R3890:Lsamp	UTSW	16	39,805,054 (GRCm39)	missense	probably benign	0.01
R3891:Lsamp	UTSW	16	39,805,054 (GRCm39)	missense	probably benign	0.01
R4554:Lsamp	UTSW	16	41,964,438 (GRCm39)	missense	probably damaging	1.00
R4672:Lsamp	UTSW	16	41,775,697 (GRCm39)	missense	probably damaging	1.00
R5151:Lsamp	UTSW	16	41,954,792 (GRCm39)	missense	probably damaging	1.00
R5617:Lsamp	UTSW	16	41,954,786 (GRCm39)	missense	probably damaging	1.00
R6075:Lsamp	UTSW	16	41,954,788 (GRCm39)	missense	probably benign	0.19
R6217:Lsamp	UTSW	16	41,954,675 (GRCm39)	missense	possibly damaging	0.54
R6477:Lsamp	UTSW	16	41,988,528 (GRCm39)	intron	probably benign
R6637:Lsamp	UTSW	16	41,353,743 (GRCm39)	missense	possibly damaging	0.86
R8256:Lsamp	UTSW	16	41,965,007 (GRCm39)	missense	probably damaging	1.00
R8970:Lsamp	UTSW	16	41,994,528 (GRCm39)	missense	possibly damaging	0.95
R9606:Lsamp	UTSW	16	41,709,292 (GRCm39)	missense	probably benign	0.30
X0024:Lsamp	UTSW	16	41,964,921 (GRCm39)	missense	possibly damaging	0.77

Posted On

2015-12-18