Incidental Mutation 'IGL02893:Ahctf1'
ID363299
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Ahctf1
Ensembl Gene ENSMUSG00000026491
Gene NameAT hook containing transcription factor 1
Synonyms6230412P20Rik, Elys
Accession Numbers
Is this an essential gene? Essential (E-score: 1.000) question?
Stock #IGL02893
Quality Score
Status
Chromosome1
Chromosomal Location179744894-179803680 bp(-) (GRCm38)
Type of Mutationnonsense
DNA Base Change (assembly) A to C at 179776011 bp
ZygosityHeterozygous
Amino Acid Change Tyrosine to Stop codon at position 823 (Y823*)
Ref Sequence ENSEMBL: ENSMUSP00000027768 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000027768]
PDB Structure
Nucleoporin ELYS (aa1-494), Mus musculus [X-RAY DIFFRACTION]
Predicted Effect probably null
Transcript: ENSMUST00000027768
AA Change: Y823*
SMART Domains Protein: ENSMUSP00000027768
Gene: ENSMUSG00000026491
AA Change: Y823*

DomainStartEndE-ValueType
Pfam:ELYS-bb 1 489 1.6e-307 PFAM
Pfam:ELYS 722 955 2.5e-58 PFAM
low complexity region 1138 1155 N/A INTRINSIC
low complexity region 1180 1192 N/A INTRINSIC
low complexity region 1352 1366 N/A INTRINSIC
low complexity region 1597 1610 N/A INTRINSIC
low complexity region 1684 1694 N/A INTRINSIC
low complexity region 1834 1841 N/A INTRINSIC
low complexity region 1918 1935 N/A INTRINSIC
AT_hook 1955 1967 3.35e-1 SMART
low complexity region 2060 2066 N/A INTRINSIC
low complexity region 2073 2084 N/A INTRINSIC
low complexity region 2096 2108 N/A INTRINSIC
Blast:KISc 2164 2217 2e-12 BLAST
Coding Region Coverage
Validation Efficiency
MGI Phenotype PHENOTYPE: Homozygous null mice die between E3.5 and E5.5. The inner cell mass cells exhibit impaired proliferation and apoptosis when grown in culture. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 45 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca13 T C 11: 9,290,543 V802A probably damaging Het
Acsl6 G A 11: 54,345,899 V540M probably damaging Het
Bbs1 T A 19: 4,897,576 K317* probably null Het
Cand2 T C 6: 115,791,960 L577P probably damaging Het
Cfap44 A T 16: 44,416,817 D449V probably damaging Het
Col28a1 C T 6: 8,103,534 G421S probably damaging Het
Dgkd A G 1: 87,915,208 probably benign Het
Entpd1 T C 19: 40,727,517 V347A probably damaging Het
Etl4 T A 2: 20,760,210 probably benign Het
Fam20a G A 11: 109,721,588 A43V probably benign Het
Fbxo9 A G 9: 78,082,095 probably benign Het
Flg2 C T 3: 93,203,613 R983W unknown Het
Gale T C 4: 135,967,602 V295A probably benign Het
Gpr139 A T 7: 119,145,143 V73D probably damaging Het
Hpca A T 4: 129,118,422 M107K probably damaging Het
Igdcc4 G T 9: 65,133,071 V1002F probably damaging Het
Irx4 T A 13: 73,268,778 L431H probably damaging Het
Lca5l T C 16: 96,178,913 T6A probably benign Het
Lrp4 C T 2: 91,474,816 R263C possibly damaging Het
Meikin G A 11: 54,417,758 C394Y possibly damaging Het
Mmp25 T C 17: 23,644,051 T129A probably damaging Het
Mmp9 A G 2: 164,949,068 probably null Het
Mtmr3 A T 11: 4,507,632 M171K possibly damaging Het
Muc4 C T 16: 32,751,648 H509Y possibly damaging Het
Nwd1 A T 8: 72,667,501 H464L probably damaging Het
Olfr173 A G 16: 58,797,657 L63P probably damaging Het
Paqr5 G A 9: 61,968,868 A128V probably benign Het
Pcdhb10 G A 18: 37,413,634 V588M probably damaging Het
Pip A G 6: 41,847,662 D28G probably damaging Het
Rnf31 T A 14: 55,599,109 F800Y probably damaging Het
Sag T G 1: 87,834,593 S327A probably benign Het
Sdf4 T C 4: 155,996,528 probably benign Het
Slc10a6 A T 5: 103,628,873 D120E probably benign Het
Spata31d1d T A 13: 59,725,979 K1247N possibly damaging Het
Stam2 A G 2: 52,714,902 V207A probably damaging Het
Sytl3 T C 17: 6,732,974 L181P probably damaging Het
Tbc1d32 T C 10: 56,017,703 E1258G probably damaging Het
Tmem63b T G 17: 45,661,900 H656P probably damaging Het
Tmem69 T A 4: 116,553,729 M15L probably benign Het
Tmprss7 T A 16: 45,669,528 I444F possibly damaging Het
Ttbk2 C A 2: 120,783,729 R168L probably damaging Het
Ttc28 A G 5: 111,285,385 Y2095C possibly damaging Het
Ube3c A G 5: 29,632,763 Y643C probably damaging Het
Ywhaq G A 12: 21,396,409 A152V probably damaging Het
Zeb2 T A 2: 44,996,607 I813F probably benign Het
Other mutations in Ahctf1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00757:Ahctf1 APN 1 179769131 missense probably damaging 1.00
IGL01714:Ahctf1 APN 1 179795877 missense probably damaging 0.99
IGL01787:Ahctf1 APN 1 179753322 missense probably benign
IGL01997:Ahctf1 APN 1 179755462 missense probably damaging 0.99
IGL02035:Ahctf1 APN 1 179766014 missense probably benign 0.00
IGL02158:Ahctf1 APN 1 179779652 missense possibly damaging 0.64
IGL02182:Ahctf1 APN 1 179753078 missense probably benign 0.00
IGL02298:Ahctf1 APN 1 179752479 missense probably benign 0.00
IGL02325:Ahctf1 APN 1 179776015 missense probably benign 0.14
IGL02619:Ahctf1 APN 1 179792451 missense possibly damaging 0.90
IGL02858:Ahctf1 APN 1 179769034 missense probably damaging 0.96
IGL02895:Ahctf1 APN 1 179793811 missense probably damaging 1.00
IGL03180:Ahctf1 APN 1 179775330 critical splice donor site probably null
IGL03220:Ahctf1 APN 1 179788202 missense probably benign 0.01
cerebro UTSW 1 179769414 missense probably damaging 0.99
R0003:Ahctf1 UTSW 1 179763473 missense probably benign 0.04
R0024:Ahctf1 UTSW 1 179752436 missense probably damaging 0.98
R0030:Ahctf1 UTSW 1 179752436 missense probably damaging 0.98
R0432:Ahctf1 UTSW 1 179784161 missense probably damaging 0.98
R0481:Ahctf1 UTSW 1 179760271 missense probably benign 0.00
R0600:Ahctf1 UTSW 1 179763468 critical splice donor site probably null
R0613:Ahctf1 UTSW 1 179769414 missense probably damaging 0.99
R0814:Ahctf1 UTSW 1 179762908 missense probably benign 0.26
R1055:Ahctf1 UTSW 1 179763486 missense possibly damaging 0.46
R1473:Ahctf1 UTSW 1 179776108 missense probably benign 0.30
R1473:Ahctf1 UTSW 1 179799279 missense probably damaging 0.99
R1689:Ahctf1 UTSW 1 179768383 missense probably damaging 0.96
R1778:Ahctf1 UTSW 1 179753015 missense possibly damaging 0.57
R1878:Ahctf1 UTSW 1 179775509 missense possibly damaging 0.96
R1925:Ahctf1 UTSW 1 179770653 missense probably damaging 0.98
R2118:Ahctf1 UTSW 1 179769452 missense probably damaging 1.00
R2122:Ahctf1 UTSW 1 179769452 missense probably damaging 1.00
R2124:Ahctf1 UTSW 1 179769452 missense probably damaging 1.00
R2373:Ahctf1 UTSW 1 179795796 missense probably damaging 1.00
R2509:Ahctf1 UTSW 1 179770693 missense possibly damaging 0.51
R2697:Ahctf1 UTSW 1 179752532 missense probably damaging 0.99
R3035:Ahctf1 UTSW 1 179753870 missense probably damaging 1.00
R3155:Ahctf1 UTSW 1 179755583 missense probably damaging 0.98
R3899:Ahctf1 UTSW 1 179777780 missense possibly damaging 0.95
R4036:Ahctf1 UTSW 1 179762616 missense possibly damaging 0.61
R4681:Ahctf1 UTSW 1 179752796 missense probably benign 0.27
R4695:Ahctf1 UTSW 1 179753054 missense possibly damaging 0.78
R4735:Ahctf1 UTSW 1 179753399 missense probably benign 0.00
R4857:Ahctf1 UTSW 1 179799357 unclassified probably benign
R4898:Ahctf1 UTSW 1 179755512 missense probably benign 0.02
R4905:Ahctf1 UTSW 1 179748627 missense probably damaging 1.00
R5011:Ahctf1 UTSW 1 179784110 missense possibly damaging 0.92
R5013:Ahctf1 UTSW 1 179784110 missense possibly damaging 0.92
R5053:Ahctf1 UTSW 1 179786784 missense possibly damaging 0.82
R5207:Ahctf1 UTSW 1 179793594 intron probably benign
R5319:Ahctf1 UTSW 1 179769050 missense probably damaging 1.00
R5343:Ahctf1 UTSW 1 179770634 nonsense probably null
R5546:Ahctf1 UTSW 1 179754068 missense probably benign 0.01
R5718:Ahctf1 UTSW 1 179769339 missense possibly damaging 0.54
R5862:Ahctf1 UTSW 1 179788330 missense probably damaging 1.00
R5958:Ahctf1 UTSW 1 179746542 unclassified probably benign
R6010:Ahctf1 UTSW 1 179795813 missense possibly damaging 0.80
R6081:Ahctf1 UTSW 1 179781672 missense probably benign 0.07
R6093:Ahctf1 UTSW 1 179762952 missense probably benign 0.01
R6207:Ahctf1 UTSW 1 179777390 intron probably null
R6268:Ahctf1 UTSW 1 179763483 missense probably benign 0.08
R6656:Ahctf1 UTSW 1 179753513 missense probably benign 0.05
R6668:Ahctf1 UTSW 1 179752407 missense probably benign 0.04
R6788:Ahctf1 UTSW 1 179752634 missense probably benign 0.00
R6860:Ahctf1 UTSW 1 179753288 missense probably benign 0.04
R6998:Ahctf1 UTSW 1 179770915 nonsense probably null
R7082:Ahctf1 UTSW 1 179775333 missense probably benign 0.15
X0067:Ahctf1 UTSW 1 179777704 missense probably damaging 0.99
Posted On2015-12-18