Incidental Mutation 'IGL02941:Itgb5'
| ID |
364525 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Itgb5
|
| Ensembl Gene |
ENSMUSG00000022817 |
| Gene Name |
integrin beta 5 |
| Synonyms |
beta5, [b]5B, [b]5, ESTM23, [b]-5, [b]5A, beta-5 |
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
IGL02941
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
16 |
| Chromosomal Location |
33650035-33769708 bp(+) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
T to G
at 33764465 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000156332
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000069345]
[ENSMUST00000115028]
[ENSMUST00000232262]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000069345
|
| SMART Domains |
Protein: ENSMUSP00000069416
Gene: ENSMUSG00000022817
| Domain | Start | End | E-Value | Type |
|---|
|
PSI
|
27 |
76 |
1.4e-7 |
SMART |
|
INB
|
35 |
463 |
1.18e-284 |
SMART |
|
VWA
|
137 |
372 |
5.95e-7 |
SMART |
|
internal_repeat_1
|
492 |
549 |
3.16e-7 |
PROSPERO |
|
EGF
|
554 |
586 |
1.95e1 |
SMART |
|
Integrin_B_tail
|
635 |
719 |
1.56e-21 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000115028
|
| SMART Domains |
Protein: ENSMUSP00000110680
Gene: ENSMUSG00000022817
| Domain | Start | End | E-Value | Type |
|---|
|
PSI
|
27 |
76 |
1.4e-7 |
SMART |
|
INB
|
35 |
463 |
1.18e-284 |
SMART |
|
VWA
|
137 |
372 |
5.95e-7 |
SMART |
|
internal_repeat_1
|
492 |
549 |
3.16e-7 |
PROSPERO |
|
EGF
|
554 |
586 |
1.95e1 |
SMART |
|
Integrin_B_tail
|
635 |
719 |
1.56e-21 |
SMART |
|
Integrin_b_cyt
|
743 |
790 |
5.97e-18 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000151930
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000231409
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000232262
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
PHENOTYPE: Homozygotes for a targeted null mutation do not appear to differ from normal in respect to development, reproduction, adenovirus infection, or wound healing. Mutant keratinocytes do show reduced migration on, and adhesion to, vitronectin in vitro. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 41 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4933405O20Rik |
G |
A |
7: 50,249,284 (GRCm39) |
R106Q |
probably damaging |
Het |
| Amhr2 |
T |
C |
15: 102,355,724 (GRCm39) |
V223A |
probably damaging |
Het |
| Aqr |
T |
A |
2: 113,943,835 (GRCm39) |
H1101L |
probably damaging |
Het |
| Arnt |
T |
A |
3: 95,367,681 (GRCm39) |
|
probably benign |
Het |
| Cacnb2 |
G |
A |
2: 14,963,640 (GRCm39) |
V85I |
probably benign |
Het |
| Cast |
A |
T |
13: 74,848,806 (GRCm39) |
D727E |
probably damaging |
Het |
| Ccdc134 |
C |
T |
15: 82,025,151 (GRCm39) |
R217W |
probably damaging |
Het |
| Cemip2 |
G |
A |
19: 21,801,207 (GRCm39) |
D775N |
possibly damaging |
Het |
| Col5a3 |
A |
G |
9: 20,715,962 (GRCm39) |
S360P |
unknown |
Het |
| Cyp4f16 |
T |
C |
17: 32,756,061 (GRCm39) |
I30T |
possibly damaging |
Het |
| Dop1b |
T |
C |
16: 93,552,361 (GRCm39) |
F267L |
probably benign |
Het |
| Fbxo3 |
A |
G |
2: 103,880,639 (GRCm39) |
T250A |
probably damaging |
Het |
| Gm4953 |
C |
T |
1: 158,995,963 (GRCm39) |
|
noncoding transcript |
Het |
| Gm9242 |
T |
C |
16: 97,292,279 (GRCm39) |
|
probably benign |
Het |
| Gsr |
G |
A |
8: 34,179,453 (GRCm39) |
V354I |
probably damaging |
Het |
| H2bc21 |
A |
G |
3: 96,128,732 (GRCm39) |
Y84C |
possibly damaging |
Het |
| Hecw1 |
T |
A |
13: 14,552,311 (GRCm39) |
D96V |
probably damaging |
Het |
| Il18r1 |
A |
G |
1: 40,537,711 (GRCm39) |
Y492C |
probably damaging |
Het |
| Lars2 |
T |
G |
9: 123,288,650 (GRCm39) |
L832R |
probably damaging |
Het |
| Ms4a6c |
A |
G |
19: 11,448,466 (GRCm39) |
|
probably benign |
Het |
| Nrxn1 |
T |
C |
17: 90,515,811 (GRCm39) |
S1227G |
probably damaging |
Het |
| Or1j11 |
T |
C |
2: 36,312,132 (GRCm39) |
C241R |
probably damaging |
Het |
| Or2c1 |
T |
C |
16: 3,657,680 (GRCm39) |
V281A |
possibly damaging |
Het |
| Or52r1c |
A |
G |
7: 102,735,528 (GRCm39) |
T263A |
probably benign |
Het |
| Pcdh17 |
A |
G |
14: 84,685,747 (GRCm39) |
Y738C |
probably damaging |
Het |
| Pcsk5 |
C |
A |
19: 17,424,865 (GRCm39) |
C1646F |
probably damaging |
Het |
| Pirb |
A |
G |
7: 3,720,377 (GRCm39) |
V332A |
probably damaging |
Het |
| Pkd1l2 |
G |
A |
8: 117,792,484 (GRCm39) |
T436I |
probably benign |
Het |
| Polrmt |
A |
T |
10: 79,573,092 (GRCm39) |
|
probably benign |
Het |
| Saxo1 |
G |
T |
4: 86,363,821 (GRCm39) |
R221S |
probably damaging |
Het |
| Specc1l |
A |
G |
10: 75,077,022 (GRCm39) |
I93V |
probably benign |
Het |
| St8sia2 |
T |
A |
7: 73,626,397 (GRCm39) |
|
probably benign |
Het |
| Tep1 |
A |
T |
14: 51,103,494 (GRCm39) |
N265K |
probably damaging |
Het |
| Thbd |
A |
T |
2: 148,248,954 (GRCm39) |
Y305N |
probably damaging |
Het |
| Tmem120a |
T |
C |
5: 135,764,605 (GRCm39) |
T325A |
probably damaging |
Het |
| Vill |
G |
A |
9: 118,895,955 (GRCm39) |
|
probably benign |
Het |
| Wdr35 |
A |
G |
12: 9,077,507 (GRCm39) |
D1060G |
probably damaging |
Het |
| Xrn2 |
T |
A |
2: 146,868,444 (GRCm39) |
F166I |
probably damaging |
Het |
| Zc3h7a |
T |
G |
16: 10,976,458 (GRCm39) |
|
probably null |
Het |
| Zdhhc13 |
G |
A |
7: 48,466,886 (GRCm39) |
|
probably benign |
Het |
| Zfp808 |
T |
A |
13: 62,320,944 (GRCm39) |
N724K |
possibly damaging |
Het |
|
| Other mutations in Itgb5 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00780:Itgb5
|
APN |
16 |
33,705,345 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01121:Itgb5
|
APN |
16 |
33,740,359 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL01620:Itgb5
|
APN |
16 |
33,740,168 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02332:Itgb5
|
APN |
16 |
33,740,500 (GRCm39) |
nonsense |
probably null |
|
|
IGL02869:Itgb5
|
APN |
16 |
33,665,362 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
IGL02881:Itgb5
|
APN |
16 |
33,740,275 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL03216:Itgb5
|
APN |
16 |
33,723,208 (GRCm39) |
missense |
probably benign |
0.38 |
|
IGL03351:Itgb5
|
APN |
16 |
33,730,922 (GRCm39) |
missense |
probably benign |
0.00 |
|
PIT4812001:Itgb5
|
UTSW |
16 |
33,740,357 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0744:Itgb5
|
UTSW |
16 |
33,720,953 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0829:Itgb5
|
UTSW |
16 |
33,764,571 (GRCm39) |
missense |
probably benign |
0.29 |
|
R0836:Itgb5
|
UTSW |
16 |
33,720,953 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1387:Itgb5
|
UTSW |
16 |
33,720,885 (GRCm39) |
nonsense |
probably null |
|
|
R1703:Itgb5
|
UTSW |
16 |
33,730,870 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1783:Itgb5
|
UTSW |
16 |
33,760,932 (GRCm39) |
missense |
probably benign |
0.13 |
|
R1826:Itgb5
|
UTSW |
16 |
33,685,930 (GRCm39) |
missense |
possibly damaging |
0.48 |
|
R1889:Itgb5
|
UTSW |
16 |
33,730,839 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2374:Itgb5
|
UTSW |
16 |
33,740,168 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4307:Itgb5
|
UTSW |
16 |
33,769,102 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R4355:Itgb5
|
UTSW |
16 |
33,665,367 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R4796:Itgb5
|
UTSW |
16 |
33,705,391 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R4879:Itgb5
|
UTSW |
16 |
33,696,348 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6165:Itgb5
|
UTSW |
16 |
33,719,612 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6584:Itgb5
|
UTSW |
16 |
33,705,400 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6617:Itgb5
|
UTSW |
16 |
33,766,962 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6748:Itgb5
|
UTSW |
16 |
33,719,667 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6979:Itgb5
|
UTSW |
16 |
33,740,356 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7090:Itgb5
|
UTSW |
16 |
33,705,464 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7150:Itgb5
|
UTSW |
16 |
33,761,013 (GRCm39) |
missense |
probably benign |
0.03 |
|
R7403:Itgb5
|
UTSW |
16 |
33,723,163 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R7418:Itgb5
|
UTSW |
16 |
33,705,464 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7719:Itgb5
|
UTSW |
16 |
33,740,486 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8309:Itgb5
|
UTSW |
16 |
33,685,923 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8347:Itgb5
|
UTSW |
16 |
33,761,048 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8856:Itgb5
|
UTSW |
16 |
33,720,962 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9100:Itgb5
|
UTSW |
16 |
33,740,551 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R9194:Itgb5
|
UTSW |
16 |
33,720,881 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9309:Itgb5
|
UTSW |
16 |
33,740,416 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9343:Itgb5
|
UTSW |
16 |
33,730,826 (GRCm39) |
splice site |
probably benign |
|
|
R9629:Itgb5
|
UTSW |
16 |
33,696,295 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9683:Itgb5
|
UTSW |
16 |
33,740,335 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R9710:Itgb5
|
UTSW |
16 |
33,685,917 (GRCm39) |
missense |
probably benign |
0.00 |
|
X0022:Itgb5
|
UTSW |
16 |
33,665,420 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
| Posted On |
2015-12-18 |
Incidental Mutation