Incidental Mutation 'R0378:Gstcd'
ID |
36457 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Gstcd
|
Ensembl Gene |
ENSMUSG00000028018 |
Gene Name |
glutathione S-transferase, C-terminal domain containing |
Synonyms |
4933434L15Rik |
MMRRC Submission |
038584-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R0378 (G1)
|
Quality Score |
83 |
Status
|
Validated
|
Chromosome |
3 |
Chromosomal Location |
132687513-132797794 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to T
at 132692169 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Leucine to Histidine
at position 582
(L582H)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000079421
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000029651]
[ENSMUST00000080583]
|
AlphaFold |
Q5RL51 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000029651
AA Change: L582H
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000029651 Gene: ENSMUSG00000028018 AA Change: L582H
Domain | Start | End | E-Value | Type |
low complexity region
|
52 |
62 |
N/A |
INTRINSIC |
low complexity region
|
168 |
181 |
N/A |
INTRINSIC |
low complexity region
|
195 |
205 |
N/A |
INTRINSIC |
low complexity region
|
208 |
229 |
N/A |
INTRINSIC |
Pfam:GidB
|
417 |
515 |
9e-9 |
PFAM |
Pfam:Methyltransf_32
|
424 |
548 |
1.1e-15 |
PFAM |
Pfam:MTS
|
430 |
508 |
5.3e-6 |
PFAM |
Pfam:Methyltransf_31
|
440 |
571 |
2.6e-11 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000080583
AA Change: L582H
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000079421 Gene: ENSMUSG00000028018 AA Change: L582H
Domain | Start | End | E-Value | Type |
low complexity region
|
52 |
62 |
N/A |
INTRINSIC |
low complexity region
|
168 |
181 |
N/A |
INTRINSIC |
low complexity region
|
195 |
205 |
N/A |
INTRINSIC |
low complexity region
|
208 |
229 |
N/A |
INTRINSIC |
Pfam:GidB
|
418 |
516 |
1.5e-8 |
PFAM |
Pfam:Methyltransf_32
|
424 |
548 |
1.1e-15 |
PFAM |
Pfam:Methyltransf_31
|
440 |
569 |
2.5e-11 |
PFAM |
|
Meta Mutation Damage Score |
0.3957 |
Coding Region Coverage |
- 1x: 99.4%
- 3x: 98.7%
- 10x: 97.0%
- 20x: 94.8%
|
Validation Efficiency |
95% (40/42) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 41 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adamts18 |
C |
A |
8: 114,469,749 (GRCm39) |
R651L |
probably damaging |
Het |
Amd1 |
T |
C |
10: 40,165,380 (GRCm39) |
D317G |
possibly damaging |
Het |
Artn |
A |
G |
4: 117,784,815 (GRCm39) |
|
probably benign |
Het |
Bub1b |
T |
A |
2: 118,471,604 (GRCm39) |
V988E |
probably benign |
Het |
Cyp2c65 |
G |
T |
19: 39,061,662 (GRCm39) |
C216F |
probably benign |
Het |
Cyp3a11 |
T |
C |
5: 145,805,417 (GRCm39) |
E200G |
probably benign |
Het |
Cyp3a25 |
T |
A |
5: 145,923,652 (GRCm39) |
K330N |
probably damaging |
Het |
Duox2 |
C |
A |
2: 122,115,064 (GRCm39) |
V1138L |
probably benign |
Het |
Erc2 |
A |
G |
14: 27,733,651 (GRCm39) |
D567G |
probably damaging |
Het |
Eri2 |
A |
G |
7: 119,393,139 (GRCm39) |
|
probably null |
Het |
Foxa3 |
A |
G |
7: 18,757,294 (GRCm39) |
Y17H |
probably damaging |
Het |
Fto |
T |
C |
8: 92,200,940 (GRCm39) |
S324P |
probably damaging |
Het |
Get3 |
A |
T |
8: 85,751,893 (GRCm39) |
M1K |
probably null |
Het |
Gls2 |
T |
G |
10: 128,043,180 (GRCm39) |
L457R |
probably benign |
Het |
Gtf3c1 |
G |
A |
7: 125,246,786 (GRCm39) |
R1508* |
probably null |
Het |
Kif21a |
T |
C |
15: 90,853,977 (GRCm39) |
|
probably null |
Het |
Klra5 |
A |
T |
6: 129,883,577 (GRCm39) |
D93E |
possibly damaging |
Het |
Lgr5 |
T |
C |
10: 115,290,404 (GRCm39) |
D456G |
probably damaging |
Het |
Mau2 |
A |
G |
8: 70,483,305 (GRCm39) |
S186P |
probably damaging |
Het |
Msr1 |
T |
C |
8: 40,042,423 (GRCm39) |
D384G |
possibly damaging |
Het |
Ncf4 |
T |
C |
15: 78,137,503 (GRCm39) |
V93A |
probably damaging |
Het |
Oas1f |
T |
G |
5: 120,994,489 (GRCm39) |
C337G |
probably damaging |
Het |
Or10al3 |
A |
G |
17: 38,011,932 (GRCm39) |
M124V |
probably damaging |
Het |
Or5p58 |
A |
T |
7: 107,694,429 (GRCm39) |
F116Y |
probably benign |
Het |
Or6c33 |
T |
A |
10: 129,853,872 (GRCm39) |
L214H |
probably damaging |
Het |
Pwwp3a |
C |
A |
10: 80,074,713 (GRCm39) |
|
probably null |
Het |
Rasl10b |
T |
C |
11: 83,309,519 (GRCm39) |
S159P |
probably damaging |
Het |
Sephs1 |
A |
G |
2: 4,904,371 (GRCm39) |
T250A |
probably benign |
Het |
Smg8 |
C |
A |
11: 86,971,249 (GRCm39) |
D841Y |
probably damaging |
Het |
Sox7 |
T |
C |
14: 64,181,398 (GRCm39) |
V65A |
probably damaging |
Het |
Sp140 |
C |
T |
1: 85,547,772 (GRCm39) |
|
probably benign |
Het |
Srsf10 |
A |
G |
4: 135,590,501 (GRCm39) |
Y142C |
possibly damaging |
Het |
Tcam1 |
G |
A |
11: 106,174,904 (GRCm39) |
E120K |
probably benign |
Het |
Tcerg1l |
A |
G |
7: 137,878,384 (GRCm39) |
V326A |
probably benign |
Het |
Tcl1b5 |
T |
A |
12: 105,145,326 (GRCm39) |
W97R |
probably damaging |
Het |
Tmem108 |
T |
C |
9: 103,376,856 (GRCm39) |
R198G |
possibly damaging |
Het |
Ube2ql1 |
T |
A |
13: 69,887,017 (GRCm39) |
Q148L |
possibly damaging |
Het |
Vmn1r5 |
A |
T |
6: 56,962,570 (GRCm39) |
I82L |
probably benign |
Het |
Wdr6 |
A |
T |
9: 108,453,063 (GRCm39) |
S273R |
probably damaging |
Het |
Ylpm1 |
C |
T |
12: 85,043,850 (GRCm39) |
|
probably benign |
Het |
Zfp90 |
G |
A |
8: 107,152,138 (GRCm39) |
R617Q |
possibly damaging |
Het |
|
Other mutations in Gstcd |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01540:Gstcd
|
APN |
3 |
132,692,175 (GRCm39) |
missense |
probably damaging |
0.96 |
IGL01800:Gstcd
|
APN |
3 |
132,790,335 (GRCm39) |
critical splice donor site |
probably null |
|
IGL02434:Gstcd
|
APN |
3 |
132,701,963 (GRCm39) |
splice site |
probably benign |
|
IGL02720:Gstcd
|
APN |
3 |
132,777,722 (GRCm39) |
missense |
probably benign |
0.00 |
R0367:Gstcd
|
UTSW |
3 |
132,692,138 (GRCm39) |
splice site |
probably benign |
|
R0382:Gstcd
|
UTSW |
3 |
132,692,169 (GRCm39) |
missense |
probably damaging |
1.00 |
R0465:Gstcd
|
UTSW |
3 |
132,688,905 (GRCm39) |
missense |
probably benign |
0.04 |
R1295:Gstcd
|
UTSW |
3 |
132,711,389 (GRCm39) |
missense |
probably damaging |
1.00 |
R1861:Gstcd
|
UTSW |
3 |
132,688,868 (GRCm39) |
missense |
probably damaging |
1.00 |
R2056:Gstcd
|
UTSW |
3 |
132,787,814 (GRCm39) |
missense |
probably benign |
0.00 |
R2331:Gstcd
|
UTSW |
3 |
132,704,641 (GRCm39) |
missense |
probably damaging |
0.98 |
R2513:Gstcd
|
UTSW |
3 |
132,788,082 (GRCm39) |
missense |
possibly damaging |
0.87 |
R2513:Gstcd
|
UTSW |
3 |
132,788,081 (GRCm39) |
missense |
possibly damaging |
0.59 |
R3547:Gstcd
|
UTSW |
3 |
132,790,599 (GRCm39) |
missense |
possibly damaging |
0.86 |
R4022:Gstcd
|
UTSW |
3 |
132,787,829 (GRCm39) |
missense |
probably damaging |
1.00 |
R4713:Gstcd
|
UTSW |
3 |
132,688,860 (GRCm39) |
missense |
probably damaging |
1.00 |
R4877:Gstcd
|
UTSW |
3 |
132,711,314 (GRCm39) |
splice site |
probably benign |
|
R5152:Gstcd
|
UTSW |
3 |
132,790,717 (GRCm39) |
missense |
possibly damaging |
0.95 |
R5165:Gstcd
|
UTSW |
3 |
132,790,440 (GRCm39) |
missense |
probably damaging |
0.99 |
R6106:Gstcd
|
UTSW |
3 |
132,704,675 (GRCm39) |
missense |
probably benign |
0.02 |
R6177:Gstcd
|
UTSW |
3 |
132,787,834 (GRCm39) |
missense |
probably damaging |
1.00 |
R7100:Gstcd
|
UTSW |
3 |
132,790,704 (GRCm39) |
missense |
probably benign |
0.01 |
R7264:Gstcd
|
UTSW |
3 |
132,790,540 (GRCm39) |
missense |
probably benign |
0.00 |
R7785:Gstcd
|
UTSW |
3 |
132,787,868 (GRCm39) |
missense |
probably damaging |
0.99 |
R7786:Gstcd
|
UTSW |
3 |
132,787,868 (GRCm39) |
missense |
probably damaging |
0.99 |
R7972:Gstcd
|
UTSW |
3 |
132,777,894 (GRCm39) |
missense |
probably benign |
0.10 |
R7975:Gstcd
|
UTSW |
3 |
132,777,863 (GRCm39) |
missense |
probably damaging |
1.00 |
R8029:Gstcd
|
UTSW |
3 |
132,787,868 (GRCm39) |
missense |
probably damaging |
0.99 |
R8036:Gstcd
|
UTSW |
3 |
132,787,868 (GRCm39) |
missense |
probably damaging |
0.99 |
R8088:Gstcd
|
UTSW |
3 |
132,787,868 (GRCm39) |
missense |
probably damaging |
0.99 |
R8716:Gstcd
|
UTSW |
3 |
132,688,950 (GRCm39) |
missense |
probably damaging |
1.00 |
R8722:Gstcd
|
UTSW |
3 |
132,777,822 (GRCm39) |
nonsense |
probably null |
|
R9276:Gstcd
|
UTSW |
3 |
132,777,665 (GRCm39) |
missense |
probably damaging |
1.00 |
R9575:Gstcd
|
UTSW |
3 |
132,704,708 (GRCm39) |
missense |
probably damaging |
1.00 |
R9789:Gstcd
|
UTSW |
3 |
132,790,357 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
PCR Primer
(F):5'- TGTCAGTCATAATGGCTAATGTGCTGC -3'
(R):5'- CAGTCAACTTGACGGGAAGAAGTCAC -3'
Sequencing Primer
(F):5'- GCTAATGTGCTGCATTACAGTTC -3'
(R):5'- AGGATTGCTCTTTTCAGCTACTC -3'
|
Posted On |
2013-05-09 |