Mutagenetix > Incidental Mutation

Incidental Mutation 'R0410:Meis2'

36551

Institutional Source

Beutler Lab

Gene Symbol

Meis2

Ensembl Gene

ENSMUSG00000027210

Gene Name

Meis homeobox 2

Synonyms

Mrg1, Meis2, A430109D20Rik, Stra10

MMRRC Submission

038612-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.854) question?

Stock #

R0410 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

115693545-115896320 bp(-) (GRCm39)

Type of Mutation

makesense

DNA Base Change (assembly)

T to C at 115694709 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Stop codon to Tryptophan at position 471 (*471W)

Ref Sequence

ENSEMBL: ENSMUSP00000099597 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028639] [ENSMUST00000074285] [ENSMUST00000102538] [ENSMUST00000110906] [ENSMUST00000110907] [ENSMUST00000110908]

AlphaFold

P97367

Predicted Effect

probably null
Transcript: ENSMUST00000028639
AA Change: *478W

SMART Domains

Protein: ENSMUSP00000028639
Gene: ENSMUSG00000027210
AA Change: *478W

Domain	Start	End	E-Value	Type
Pfam:Meis_PKNOX_N	110	194	3.8e-48	PFAM
HOX	276	341	4.27e-12	SMART
low complexity region	395	402	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000074285

SMART Domains

Protein: ENSMUSP00000073898
Gene: ENSMUSG00000027210

Domain	Start	End	E-Value	Type
HOX	275	340	4.27e-12	SMART
low complexity region	375	388	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000102538
AA Change: *471W

SMART Domains

Protein: ENSMUSP00000099597
Gene: ENSMUSG00000027210
AA Change: *471W

Domain	Start	End	E-Value	Type
HOX	276	341	4.27e-12	SMART
low complexity region	388	395	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110906

SMART Domains

Protein: ENSMUSP00000106531
Gene: ENSMUSG00000027210

Domain	Start	End	E-Value	Type
HOX	275	340	4.27e-12	SMART
low complexity region	382	395	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110907

SMART Domains

Protein: ENSMUSP00000106532
Gene: ENSMUSG00000027210

Domain	Start	End	E-Value	Type
HOX	276	341	4.27e-12	SMART
low complexity region	383	396	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110908

SMART Domains

Protein: ENSMUSP00000106533
Gene: ENSMUSG00000027210

Domain	Start	End	E-Value	Type
HOX	276	341	4.27e-12	SMART
low complexity region	376	389	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000118654

SMART Domains

Protein: ENSMUSP00000113915
Gene: ENSMUSG00000027210

Domain	Start	End	E-Value	Type
low complexity region	39	52	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000120995

SMART Domains

Protein: ENSMUSP00000113630
Gene: ENSMUSG00000027210

Domain	Start	End	E-Value	Type
low complexity region	39	52	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000189640

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151279

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000177493

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149217

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150477

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.1%
20x: 95.1%

Validation Efficiency

MGI Phenotype

FUNCTION: This gene encodes a homeobox protein belonging to the TALE ('three amino acid loop extension') family of homeodomain-containing proteins. TALE homeobox proteins are highly conserved transcriptional regulators and several members have been shown to be essential contributors to developmental programs. In mice, a knock-out of this gene leads to lethality at embryonic day 14, accompanied with hemorrhaging. Embryos lacking this gene show defects in tissues derived from the neural crest, suggesting a critical role of this gene during cranial and cardiac neural crest cell development. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2016]
PHENOTYPE: Mice homozygous for a null allele display early fetal lethality with hemorrhaging, persistent truncus arteriosis, absence of cardic valves and defects in other neural crest cell derived tissues. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 70 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4833420G17Rik	A	G	13: 119,606,268 (GRCm39)	D170G	probably benign	Het
Actrt3	C	T	3: 30,652,273 (GRCm39)	G274S	probably benign	Het
Adamts18	G	T	8: 114,440,990 (GRCm39)	C889*	probably null	Het
Alkbh6	C	T	7: 30,012,031 (GRCm39)	P104S	probably damaging	Het
Alms1	A	T	6: 85,564,785 (GRCm39)	E53V	unknown	Het
Ap3s1	T	C	18: 46,912,279 (GRCm39)	C100R	probably benign	Het
Apbb2	G	T	5: 66,609,149 (GRCm39)	A166E	possibly damaging	Het
Asph	A	G	4: 9,595,415 (GRCm39)	V174A	probably damaging	Het
Cacna2d2	T	C	9: 107,401,819 (GRCm39)	L758P	probably damaging	Het
Cacng5	A	G	11: 107,768,195 (GRCm39)	S271P	possibly damaging	Het
Camta1	C	A	4: 151,159,597 (GRCm39)	R1614L	probably damaging	Het
Chn1	A	T	2: 73,462,094 (GRCm39)	C236*	probably null	Het
Coro1b	T	C	19: 4,199,362 (GRCm39)	V7A	probably damaging	Het
Dhx16	A	G	17: 36,201,859 (GRCm39)	Y962C	probably damaging	Het
Dixdc1	T	C	9: 50,596,153 (GRCm39)	D152G	probably damaging	Het
Dmrt1	T	C	19: 25,483,467 (GRCm39)	S84P	probably damaging	Het
Dnah10	A	G	5: 124,832,799 (GRCm39)	D844G	probably benign	Het
Edn3	C	T	2: 174,603,482 (GRCm39)	P77S	possibly damaging	Het
Efcab7	T	C	4: 99,735,487 (GRCm39)		probably null	Het
Fam83g	A	G	11: 61,594,218 (GRCm39)	D584G	probably damaging	Het
Fbxo7	T	A	10: 85,865,102 (GRCm39)		probably null	Het
Ffar1	T	C	7: 30,560,055 (GRCm39)	T281A	probably benign	Het
Fntb	T	C	12: 76,934,826 (GRCm39)	V201A	probably benign	Het
Gart	C	A	16: 91,438,215 (GRCm39)	A101S	probably damaging	Het
Gbp9	T	C	5: 105,232,939 (GRCm39)	T238A	probably benign	Het
Hectd4	T	C	5: 121,424,329 (GRCm39)	L663S	possibly damaging	Het
Helz2	A	T	2: 180,872,386 (GRCm39)	V2512E	probably damaging	Het
Hip1	A	C	5: 135,487,009 (GRCm39)	L66R	probably damaging	Het
Iigp1	T	A	18: 60,523,375 (GRCm39)	D164E	probably benign	Het
Kcnip3	A	G	2: 127,301,986 (GRCm39)	S193P	probably damaging	Het
Klra9	T	A	6: 130,165,707 (GRCm39)	T103S	probably benign	Het
Minar1	T	G	9: 89,484,256 (GRCm39)	E380D	probably damaging	Het
Mrpl21	T	C	19: 3,334,792 (GRCm39)	S45P	possibly damaging	Het
Mterf1b	A	G	5: 4,246,488 (GRCm39)	E43G	probably benign	Het
Mycbp2	G	T	14: 103,372,569 (GRCm39)	S4092R	probably damaging	Het
Nfatc3	A	T	8: 106,822,828 (GRCm39)	N538I	probably damaging	Het
Nphp4	T	C	4: 152,641,503 (GRCm39)	C1095R	probably benign	Het
Npm2	T	A	14: 70,889,993 (GRCm39)	T13S	probably benign	Het
Or1m1	C	A	9: 18,666,137 (GRCm39)	V265F	probably damaging	Het
Or7e176	T	A	9: 20,171,797 (GRCm39)	F220L	probably benign	Het
Plcg2	A	T	8: 118,342,112 (GRCm39)	I1158F	probably damaging	Het
Popdc3	T	C	10: 45,193,829 (GRCm39)	V210A	possibly damaging	Het
Postn	T	C	3: 54,292,698 (GRCm39)	L755S	possibly damaging	Het
Prdx6b	T	C	2: 80,123,373 (GRCm39)	F61L	probably damaging	Het
Rars1	C	T	11: 35,716,847 (GRCm39)	R223H	probably damaging	Het
Robo1	G	A	16: 72,768,872 (GRCm39)	G479D	possibly damaging	Het
Scaf4	A	G	16: 90,057,058 (GRCm39)	Y98H	unknown	Het
Scn4a	A	G	11: 106,214,775 (GRCm39)	I1274T	probably damaging	Het
Senp2	G	T	16: 21,828,444 (GRCm39)	R18L	probably damaging	Het
Six5	T	A	7: 18,830,381 (GRCm39)	V336D	probably damaging	Het
Slc31a2	G	A	4: 62,210,890 (GRCm39)	E8K	probably benign	Het
Slc4a7	A	T	14: 14,738,299 (GRCm38)	T184S	probably damaging	Het
Slco2a1	T	A	9: 102,950,513 (GRCm39)		probably null	Het
Smr3a	T	G	5: 88,156,070 (GRCm39)		probably benign	Het
Sqor	T	C	2: 122,629,442 (GRCm39)	V100A	probably benign	Het
Srarp	T	C	4: 141,160,459 (GRCm39)	N125D	possibly damaging	Het
Stam	T	C	2: 14,143,802 (GRCm39)	V364A	probably benign	Het
Tgm5	T	C	2: 120,908,039 (GRCm39)	I46V	possibly damaging	Het
Tie1	A	T	4: 118,337,766 (GRCm39)	V443E	probably damaging	Het
Tipin	T	C	9: 64,195,397 (GRCm39)	M1T	probably null	Het
Tnc	T	C	4: 63,925,931 (GRCm39)	T950A	probably benign	Het
Tns3	T	C	11: 8,385,852 (GRCm39)	D1382G	probably benign	Het
Tor1aip1	A	G	1: 155,911,686 (GRCm39)	V99A	possibly damaging	Het
Trim16	C	T	11: 62,711,297 (GRCm39)		probably benign	Het
Ttn	G	T	2: 76,618,701 (GRCm39)	N14448K	possibly damaging	Het
Ttn	C	T	2: 76,717,204 (GRCm39)		probably benign	Het
Tut4	A	G	4: 108,343,752 (GRCm39)	R255G	probably benign	Het
Vmn1r23	A	G	6: 57,903,175 (GRCm39)	I201T	probably benign	Het
Vmn2r13	T	A	5: 109,321,679 (GRCm39)	K339N	probably benign	Het
Yap1	A	G	9: 8,001,468 (GRCm39)	Y173H	probably damaging	Het

Other mutations in Meis2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00590:Meis2	APN	2	115,699,274 (GRCm39)	missense	probably damaging	1.00
IGL00708:Meis2	APN	2	115,694,725 (GRCm39)	missense	probably benign	0.11
IGL01095:Meis2	APN	2	115,694,905 (GRCm39)	missense	probably benign
IGL02199:Meis2	APN	2	115,830,737 (GRCm39)	missense	probably benign	0.01
IGL02562:Meis2	APN	2	115,879,627 (GRCm39)	missense	probably damaging	1.00
IGL02902:Meis2	APN	2	115,893,804 (GRCm39)	missense	probably damaging	0.96
IGL03183:Meis2	APN	2	115,890,002 (GRCm39)	missense	probably damaging	0.98
IGL03205:Meis2	APN	2	115,694,731 (GRCm39)	missense	probably benign	0.08
P4748:Meis2	UTSW	2	115,694,961 (GRCm39)	missense	probably benign	0.03
R0369:Meis2	UTSW	2	115,893,897 (GRCm39)	missense	possibly damaging	0.82
R1465:Meis2	UTSW	2	115,889,151 (GRCm39)	missense	probably benign	0.03
R1465:Meis2	UTSW	2	115,889,151 (GRCm39)	missense	probably benign	0.03
R1548:Meis2	UTSW	2	115,889,183 (GRCm39)	missense	probably damaging	0.97
R1593:Meis2	UTSW	2	115,830,745 (GRCm39)	missense	probably damaging	1.00
R3835:Meis2	UTSW	2	115,752,228 (GRCm39)	missense	probably damaging	1.00
R4353:Meis2	UTSW	2	115,890,044 (GRCm39)	missense	probably damaging	0.99
R4756:Meis2	UTSW	2	115,830,686 (GRCm39)	missense	probably damaging	1.00
R4936:Meis2	UTSW	2	115,694,893 (GRCm39)	missense	probably benign
R5841:Meis2	UTSW	2	115,889,145 (GRCm39)	missense	probably benign
R5967:Meis2	UTSW	2	115,694,790 (GRCm39)	missense	probably benign	0.04
R6661:Meis2	UTSW	2	115,694,751 (GRCm39)	missense	probably damaging	0.97
R6781:Meis2	UTSW	2	115,879,636 (GRCm39)	missense	probably benign	0.20
R7239:Meis2	UTSW	2	115,889,484 (GRCm39)	splice site	probably null
R7606:Meis2	UTSW	2	115,893,801 (GRCm39)	missense	possibly damaging	0.93
R7919:Meis2	UTSW	2	115,697,788 (GRCm39)	missense	probably benign	0.01
R8134:Meis2	UTSW	2	115,697,369 (GRCm39)	missense	probably benign	0.22
R8797:Meis2	UTSW	2	115,694,986 (GRCm39)	missense	probably benign
R8881:Meis2	UTSW	2	115,889,116 (GRCm39)	missense	probably benign	0.16
R9102:Meis2	UTSW	2	115,694,760 (GRCm39)	missense	probably benign	0.26
R9153:Meis2	UTSW	2	115,697,756 (GRCm39)	missense	probably benign	0.10
R9497:Meis2	UTSW	2	115,694,724 (GRCm39)	missense	possibly damaging	0.95

Predicted Primers

PCR Primer
(F):5'- TCAGACAAGTGTCCATCTCGCTCC -3'
(R):5'- GCATTCATATTTGCCAAGCCATCCC -3'

Sequencing Primer
(F):5'- AAATTGTCTCGATGAGCCCG -3'
(R):5'- CCATCCCCACCACCCAG -3'

Posted On

2013-05-09