Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02965:Gcnt3'

365533

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Gcnt3

Ensembl Gene

ENSMUSG00000032226

Gene Name

glucosaminyl (N-acetyl) transferase 3, mucin type

Synonyms

2010013H22Rik, 2210401J11Rik, 2210021I22Rik

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL02965

Quality Score

Status

Chromosome

Chromosomal Location

69938778-69945370 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 69942235 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 111 (E111G)

Ref Sequence

ENSEMBL: ENSMUSP00000034751 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034751]

AlphaFold

Q5JCT0

Predicted Effect

probably benign
Transcript: ENSMUST00000034751
AA Change: E111G

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)

SMART Domains

Protein: ENSMUSP00000034751
Gene: ENSMUSG00000032226
AA Change: E111G

Domain	Start	End	E-Value	Type
transmembrane domain	13	30	N/A	INTRINSIC
Pfam:Branch	133	401	2.1e-63	PFAM

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the N-acetylglucosaminyltransferase family. The encoded protein is a beta-6-N-acetylglucosamine-transferase that catalyzes the formation of core 2 and core 4 O-glycans on mucin-type glycoproteins.[provided by RefSeq, Apr 2009]
PHENOTYPE: Homozygote null mice have decreases in core 2 O-glycan structures on cell surfaces, decreased immunoglobulin levels, and disrupted mucosal barrier in the intestines. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca6	T	C	11: 110,071,439 (GRCm39)	K1471R	probably benign	Het
Add1	A	G	5: 34,777,467 (GRCm39)	S77G	probably damaging	Het
Atm	G	T	9: 53,364,863 (GRCm39)	N2642K	probably damaging	Het
Atp6v0a2	T	A	5: 124,767,267 (GRCm39)	M10K	possibly damaging	Het
Btd	T	A	14: 31,389,193 (GRCm39)	S305T	probably damaging	Het
Cmya5	C	T	13: 93,229,065 (GRCm39)	V2008I	probably benign	Het
Cpd	T	G	11: 76,681,814 (GRCm39)		probably benign	Het
Dis3l	A	G	9: 64,217,766 (GRCm39)	F772L	probably damaging	Het
Dlg5	A	T	14: 24,222,091 (GRCm39)	I517N	probably damaging	Het
Fig4	G	A	10: 41,161,661 (GRCm39)	T34M	probably damaging	Het
Flna	C	T	X: 73,270,816 (GRCm39)	V2235I	probably damaging	Het
Flot2	T	C	11: 77,950,031 (GRCm39)	I371T	possibly damaging	Het
Fsip2	G	A	2: 82,813,398 (GRCm39)	S3239N	probably benign	Het
Gbp3	A	G	3: 142,273,343 (GRCm39)	I297V	probably benign	Het
Gdi1	G	T	X: 73,351,331 (GRCm39)	A148S	probably benign	Het
Heatr5b	G	A	17: 79,060,502 (GRCm39)	H2058Y	probably benign	Het
Hsp90aa1	A	G	12: 110,662,113 (GRCm39)	M1T	probably null	Het
Il22b	A	G	10: 118,130,762 (GRCm39)	S45P	probably damaging	Het
Inppl1	C	A	7: 101,477,478 (GRCm39)	V715F	possibly damaging	Het
Kansl1	T	C	11: 104,225,991 (GRCm39)	Y975C	probably damaging	Het
Kif18b	A	G	11: 102,807,338 (GRCm39)		probably benign	Het
Krt40	T	A	11: 99,432,492 (GRCm39)	R175W	probably damaging	Het
Map3k19	T	C	1: 127,751,803 (GRCm39)	D516G	probably damaging	Het
Mfsd3	A	G	15: 76,587,352 (GRCm39)	H345R	probably benign	Het
Mlkl	A	T	8: 112,058,469 (GRCm39)	I162N	probably benign	Het
Mtnr1a	A	T	8: 45,522,419 (GRCm39)	N58I	probably damaging	Het
Nsmf	T	C	2: 24,951,774 (GRCm39)	V499A	probably damaging	Het
Nudt6	A	G	3: 37,473,655 (GRCm39)	L22P	probably damaging	Het
Nxf7	T	G	X: 134,490,159 (GRCm39)	E35A	probably damaging	Het
Or11h23	A	C	14: 50,948,653 (GRCm39)	I289L	probably damaging	Het
Paf1	T	C	7: 28,095,629 (GRCm39)		probably null	Het
Pcdhb11	G	T	18: 37,557,021 (GRCm39)	V784L	probably benign	Het
Pglyrp2	T	C	17: 32,637,560 (GRCm39)	D156G	probably benign	Het
Pnpt1	A	G	11: 29,106,939 (GRCm39)	D670G	probably damaging	Het
Polr1b	T	A	2: 128,967,443 (GRCm39)	H945Q	probably benign	Het
Ptk6	C	T	2: 180,840,861 (GRCm39)		probably benign	Het
Rftn1	C	T	17: 50,362,280 (GRCm39)	E273K	probably benign	Het
Rnf125	A	G	18: 21,116,168 (GRCm39)	I117V	probably benign	Het
Robo4	A	G	9: 37,321,765 (GRCm39)	K742R	possibly damaging	Het
Sez6l	T	C	5: 112,623,440 (GRCm39)	E37G	probably damaging	Het
Skint4	A	T	4: 111,993,218 (GRCm39)	I306L	probably benign	Het
Sntb1	A	T	15: 55,506,081 (GRCm39)	Y497*	probably null	Het
Snx27	C	A	3: 94,489,733 (GRCm39)	V42L	probably damaging	Het
Sorbs1	T	A	19: 40,365,187 (GRCm39)	T199S	probably benign	Het
Sorcs2	A	G	5: 36,235,301 (GRCm39)	Y72H	probably benign	Het
Spef2	G	T	15: 9,725,192 (GRCm39)		probably benign	Het
Sucla2	G	T	14: 73,816,871 (GRCm39)	V204L	probably benign	Het
Tescl	C	A	7: 24,033,098 (GRCm39)	V76F	probably damaging	Het
Tnxb	T	A	17: 34,928,628 (GRCm39)	Y2681N	possibly damaging	Het
Usp42	T	C	5: 143,713,769 (GRCm39)	T2A	probably damaging	Het
Vdac3-ps1	T	A	13: 18,205,431 (GRCm39)		noncoding transcript	Het
Wapl	T	A	14: 34,461,181 (GRCm39)		probably benign	Het

Other mutations in Gcnt3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01415:Gcnt3	APN	9	69,941,739 (GRCm39)	missense	probably benign	0.20
IGL02617:Gcnt3	APN	9	69,941,444 (GRCm39)	missense	probably damaging	1.00
IGL03113:Gcnt3	APN	9	69,941,983 (GRCm39)	missense	probably damaging	1.00
IGL03374:Gcnt3	APN	9	69,941,695 (GRCm39)	missense	possibly damaging	0.89
PIT4131001:Gcnt3	UTSW	9	69,941,326 (GRCm39)	missense	possibly damaging	0.80
R0012:Gcnt3	UTSW	9	69,941,367 (GRCm39)	missense	probably benign	0.04
R0012:Gcnt3	UTSW	9	69,941,367 (GRCm39)	missense	probably benign	0.04
R1241:Gcnt3	UTSW	9	69,941,615 (GRCm39)	missense	probably benign	0.01
R1653:Gcnt3	UTSW	9	69,942,359 (GRCm39)	missense	probably damaging	1.00
R1662:Gcnt3	UTSW	9	69,941,659 (GRCm39)	missense	probably benign	0.00
R2213:Gcnt3	UTSW	9	69,941,989 (GRCm39)	missense	probably benign	0.16
R4588:Gcnt3	UTSW	9	69,941,512 (GRCm39)	missense	probably damaging	1.00
R4927:Gcnt3	UTSW	9	69,942,464 (GRCm39)	missense	probably damaging	1.00
R5407:Gcnt3	UTSW	9	69,941,471 (GRCm39)	missense	probably benign	0.00
R5718:Gcnt3	UTSW	9	69,941,552 (GRCm39)	missense	probably benign	0.00
R6974:Gcnt3	UTSW	9	69,942,169 (GRCm39)	missense	probably damaging	1.00
R7883:Gcnt3	UTSW	9	69,941,453 (GRCm39)	missense	probably damaging	0.97
R8215:Gcnt3	UTSW	9	69,941,455 (GRCm39)	missense	probably damaging	1.00
R8483:Gcnt3	UTSW	9	69,941,959 (GRCm39)	missense	probably damaging	1.00
R8558:Gcnt3	UTSW	9	69,941,996 (GRCm39)	nonsense	probably null
R8735:Gcnt3	UTSW	9	69,941,728 (GRCm39)	missense	probably benign	0.01
R9156:Gcnt3	UTSW	9	69,941,939 (GRCm39)	missense	probably damaging	1.00
R9269:Gcnt3	UTSW	9	69,941,290 (GRCm39)	missense	probably damaging	1.00
R9287:Gcnt3	UTSW	9	69,941,693 (GRCm39)	missense	probably damaging	1.00
R9302:Gcnt3	UTSW	9	69,942,529 (GRCm39)	missense	possibly damaging	0.85
R9524:Gcnt3	UTSW	9	69,941,569 (GRCm39)	missense	probably damaging	1.00
R9568:Gcnt3	UTSW	9	69,942,346 (GRCm39)	missense	probably benign	0.00

Posted On

2015-12-18