Incidental Mutation 'IGL02966:Calu'
ID 365608
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Calu
Ensembl Gene ENSMUSG00000029767
Gene Name calumenin
Synonyms 9530075H20Rik
Accession Numbers
Essential gene? Possibly essential (E-score: 0.536) question?
Stock # IGL02966
Quality Score
Status
Chromosome 6
Chromosomal Location 29348105-29376674 bp(+) (GRCm39)
Type of Mutation nonsense
DNA Base Change (assembly) A to T at 29356584 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Lysine to Stop codon at position 39 (K39*)
Ref Sequence ENSEMBL: ENSMUSP00000133945 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000031779] [ENSMUST00000090481] [ENSMUST00000172974] [ENSMUST00000173216] [ENSMUST00000173694] [ENSMUST00000174096]
AlphaFold O35887
Predicted Effect probably null
Transcript: ENSMUST00000031779
AA Change: K37*
SMART Domains Protein: ENSMUSP00000031779
Gene: ENSMUSG00000029767
AA Change: K37*

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
EFh 72 100 1.1e1 SMART
Blast:EFh 108 136 3e-11 BLAST
EFh 155 183 9.61e1 SMART
EFh 192 220 2.03e-2 SMART
Blast:EFh 233 261 2e-10 BLAST
EFh 269 297 5.75e1 SMART
Predicted Effect probably null
Transcript: ENSMUST00000090481
AA Change: K37*
SMART Domains Protein: ENSMUSP00000087967
Gene: ENSMUSG00000029767
AA Change: K37*

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
EFh 72 100 1.82e0 SMART
EFh 108 136 2.44e1 SMART
EFh 155 183 9.61e1 SMART
EFh 192 220 2.03e-2 SMART
Blast:EFh 233 261 2e-10 BLAST
EFh 269 297 5.75e1 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000156163
SMART Domains Protein: ENSMUSP00000133615
Gene: ENSMUSG00000029767

DomainStartEndE-ValueType
EFh 26 54 9.61e1 SMART
EFh 63 91 2.03e-2 SMART
Blast:EFh 104 132 3e-11 BLAST
Predicted Effect probably null
Transcript: ENSMUST00000172974
AA Change: K37*
SMART Domains Protein: ENSMUSP00000133390
Gene: ENSMUSG00000029767
AA Change: K37*

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
EFh 72 100 1.1e1 SMART
Blast:EFh 108 136 1e-11 BLAST
EFh 155 183 9.61e1 SMART
EFh 192 220 1.41e-1 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000173216
SMART Domains Protein: ENSMUSP00000134708
Gene: ENSMUSG00000029767

DomainStartEndE-ValueType
EFh 3 31 9.61e1 SMART
EFh 40 68 2.03e-2 SMART
Blast:EFh 81 109 2e-11 BLAST
EFh 117 145 5.75e1 SMART
Predicted Effect probably null
Transcript: ENSMUST00000173694
AA Change: K37*
SMART Domains Protein: ENSMUSP00000133436
Gene: ENSMUSG00000029767
AA Change: K37*

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
EFh 72 100 5.38e0 SMART
EFh 108 136 5.75e1 SMART
Predicted Effect probably null
Transcript: ENSMUST00000174096
AA Change: K39*
SMART Domains Protein: ENSMUSP00000133945
Gene: ENSMUSG00000029767
AA Change: K39*

DomainStartEndE-ValueType
signal peptide 1 19 N/A INTRINSIC
Pfam:EF-hand_7 43 97 5.3e-8 PFAM
Pfam:EF-hand_6 72 101 6.5e-5 PFAM
Pfam:EF-hand_7 72 133 5e-12 PFAM
Pfam:EF-hand_5 73 98 4.5e-5 PFAM
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The product of this gene is a calcium-binding protein localized in the endoplasmic reticulum (ER) and it is involved in such ER functions as protein folding and sorting. This protein belongs to a family of multiple EF-hand proteins (CERC) that include reticulocalbin, ERC-55, and Cab45 and the product of this gene. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Oct 2008]
Allele List at MGI
Other mutations in this stock
Total: 59 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930595M18Rik A T X: 80,463,317 (GRCm39) Y797N possibly damaging Het
Actbl2 G A 13: 111,392,106 (GRCm39) G147E probably damaging Het
Adam18 A T 8: 25,101,165 (GRCm39) probably benign Het
Ahcyl2 G A 6: 29,880,556 (GRCm39) V175I probably benign Het
Alox12 T A 11: 70,140,911 (GRCm39) T375S probably damaging Het
Batf2 C A 19: 6,221,819 (GRCm39) Q210K probably damaging Het
Bicd1 T C 6: 149,385,494 (GRCm39) S76P probably damaging Het
Bphl A T 13: 34,247,980 (GRCm39) H251L probably damaging Het
C130074G19Rik C A 1: 184,614,943 (GRCm39) E82D probably damaging Het
Capns1 T C 7: 29,891,618 (GRCm39) D142G probably damaging Het
Ccr8 T C 9: 119,923,206 (GRCm39) V107A probably damaging Het
Cep170b G A 12: 112,702,878 (GRCm39) G447D possibly damaging Het
Chat C T 14: 32,170,903 (GRCm39) V199M probably damaging Het
Cntnap1 G T 11: 101,075,575 (GRCm39) V918L probably damaging Het
Cyp27a1 A G 1: 74,771,249 (GRCm39) T145A probably benign Het
Dgkq T A 5: 108,804,287 (GRCm39) probably null Het
Dnhd1 A G 7: 105,369,948 (GRCm39) I4458V probably benign Het
Enpp1 T A 10: 24,536,172 (GRCm39) E409D probably damaging Het
Fam78b G T 1: 166,906,457 (GRCm39) L205F probably damaging Het
Foxr2 C A X: 151,913,677 (GRCm39) R183S probably damaging Het
Ganc T C 2: 120,264,129 (GRCm39) S361P probably damaging Het
Gfra4 C A 2: 130,884,560 (GRCm39) A15S possibly damaging Het
Gm8011 A T 14: 42,287,957 (GRCm39) D145V unknown Het
Gnb4 A G 3: 32,639,372 (GRCm39) V307A probably benign Het
Hdac4 A T 1: 91,982,667 (GRCm39) V17E possibly damaging Het
Herc6 G A 6: 57,560,318 (GRCm39) probably null Het
Hivep3 A G 4: 119,989,383 (GRCm39) T1945A probably benign Het
Ica1l A T 1: 60,049,298 (GRCm39) N218K probably damaging Het
Kmt2b A T 7: 30,274,887 (GRCm39) L1939Q probably benign Het
Lrrc40 G A 3: 157,747,302 (GRCm39) probably benign Het
Marchf8 C T 6: 116,380,499 (GRCm39) R117C probably damaging Het
Megf6 T C 4: 154,338,234 (GRCm39) S327P probably damaging Het
Mocos T G 18: 24,809,668 (GRCm39) C424G probably damaging Het
Mrpl50 A G 4: 49,521,014 (GRCm39) W14R probably benign Het
Mysm1 A T 4: 94,863,523 (GRCm39) D23E probably benign Het
Naa35 T A 13: 59,734,085 (GRCm39) D34E probably benign Het
Nid1 A G 13: 13,656,806 (GRCm39) I646V probably benign Het
Nupr1 T C 7: 126,224,073 (GRCm39) probably benign Het
Or2aj6 G T 16: 19,443,051 (GRCm39) H266Q probably damaging Het
Or5b24 A T 19: 12,912,164 (GRCm39) I21F probably benign Het
Or8b12b T G 9: 37,684,882 (GRCm39) L309R probably benign Het
Pcbp2 A C 15: 102,392,684 (GRCm39) probably benign Het
Pde8b T C 13: 95,232,156 (GRCm39) Q158R probably damaging Het
Pdzd8 T C 19: 59,289,291 (GRCm39) Y703C probably damaging Het
Plxnb3 T C X: 72,808,889 (GRCm39) S885P probably benign Het
Poc1b T A 10: 98,980,176 (GRCm39) C136S probably damaging Het
Pole2 T C 12: 69,256,649 (GRCm39) D292G probably damaging Het
Prpf39 T C 12: 65,089,553 (GRCm39) V97A probably benign Het
Rbbp8 T A 18: 11,838,869 (GRCm39) H183Q possibly damaging Het
Scn2a C T 2: 65,532,188 (GRCm39) T600M possibly damaging Het
Spata32 T C 11: 103,099,629 (GRCm39) Q292R possibly damaging Het
Sugp1 T C 8: 70,523,758 (GRCm39) probably benign Het
Sult3a1 A C 10: 33,753,269 (GRCm39) probably benign Het
Tpm3-rs7 C T 14: 113,552,810 (GRCm39) Q235* probably null Het
Trbv2 A T 6: 41,024,685 (GRCm39) T34S possibly damaging Het
Tssk6 A G 8: 70,355,535 (GRCm39) Y193C probably benign Het
Ttn T C 2: 76,538,802 (GRCm39) K34676R possibly damaging Het
Ugt3a1 T C 15: 9,370,154 (GRCm39) Y433H probably damaging Het
Wdhd1 T C 14: 47,479,101 (GRCm39) K1072E possibly damaging Het
Other mutations in Calu
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01142:Calu APN 6 29,366,207 (GRCm39) critical splice donor site probably null
IGL01432:Calu APN 6 29,356,552 (GRCm39) missense possibly damaging 0.92
IGL02926:Calu APN 6 29,366,919 (GRCm39) missense possibly damaging 0.74
IGL03069:Calu APN 6 29,356,582 (GRCm39) missense possibly damaging 0.50
R0320:Calu UTSW 6 29,374,550 (GRCm39) utr 3 prime probably benign
R1080:Calu UTSW 6 29,366,919 (GRCm39) missense possibly damaging 0.74
R1487:Calu UTSW 6 29,366,955 (GRCm39) missense probably benign 0.38
R1560:Calu UTSW 6 29,361,657 (GRCm39) missense probably benign 0.00
R1993:Calu UTSW 6 29,366,974 (GRCm39) missense possibly damaging 0.88
R2074:Calu UTSW 6 29,372,614 (GRCm39) missense probably damaging 1.00
R3944:Calu UTSW 6 29,361,710 (GRCm39) missense possibly damaging 0.89
R5024:Calu UTSW 6 29,374,518 (GRCm39) utr 3 prime probably benign
R5874:Calu UTSW 6 29,372,617 (GRCm39) missense probably damaging 1.00
R7297:Calu UTSW 6 29,356,554 (GRCm39) nonsense probably null
R7675:Calu UTSW 6 29,356,516 (GRCm39) missense probably benign
R9070:Calu UTSW 6 29,356,567 (GRCm39) missense probably benign
R9484:Calu UTSW 6 29,366,162 (GRCm39) missense probably damaging 1.00
Z1177:Calu UTSW 6 29,372,514 (GRCm39) missense probably damaging 0.99
Posted On 2015-12-18