Mutagenetix > Incidental Mutation

Incidental Mutation 'R4787:Lpar5'

367173

Institutional Source

Beutler Lab

Gene Symbol

Lpar5

Ensembl Gene

ENSMUSG00000067714

Gene Name

lysophosphatidic acid receptor 5

Synonyms

Gpr92, LOC381810, GPR93, LPA5

MMRRC Submission

041975-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.074) question?

Stock #

R4787 (G1)

Quality Score

138

Status

Validated

Chromosome

Chromosomal Location

125044883-125059435 bp(+) (GRCm39)

Type of Mutation

splice site (26 bp from exon)

DNA Base Change (assembly)

A to G at 125059461 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000132511 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000088292] [ENSMUST00000140346] [ENSMUST00000171989]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000088292

SMART Domains

Protein: ENSMUSP00000085630
Gene: ENSMUSG00000067714

Domain	Start	End	E-Value	Type
low complexity region	15	27	N/A	INTRINSIC
Pfam:7tm_1	55	313	7.4e-40	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000140346

SMART Domains

Protein: ENSMUSP00000119904
Gene: ENSMUSG00000067714

Domain	Start	End	E-Value	Type
low complexity region	15	27	N/A	INTRINSIC
Pfam:7tm_1	55	164	1.5e-30	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000171989

SMART Domains

Protein: ENSMUSP00000132511
Gene: ENSMUSG00000067714

Domain	Start	End	E-Value	Type
low complexity region	15	27	N/A	INTRINSIC
Pfam:7tm_1	55	313	1.1e-48	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203956

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.6%

Validation Efficiency

100% (72/72)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the rhodopsin class of G protein-coupled transmembrane receptors. This protein transmits extracellular signals from lysophosphatidic acid to cells through heterotrimeric G proteins and mediates numerous cellular processes. Many G protein receptors serve as targets for pharmaceutical drugs. Transcript variants of this gene have been described.[provided by RefSeq, Dec 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit resistance to neuropathic pain and myelin sheath alterations. Mice homozygous for a different targeted allele exhibit decreased nociception sensitivity, decreased anxiety-related response and enhanced coordination and spatial learning. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700030K09Rik	C	A	8: 73,199,008 (GRCm39)	Y138*	probably null	Het
4933440M02Rik	T	C	7: 124,930,714 (GRCm39)		noncoding transcript	Het
Amy2b	T	C	3: 113,058,634 (GRCm39)		noncoding transcript	Het
Anxa1	T	A	19: 20,351,118 (GRCm39)	D334V	probably damaging	Het
Atoh8	T	C	6: 72,200,761 (GRCm39)	T310A	possibly damaging	Het
BC002059	G	A	17: 17,193,810 (GRCm39)		noncoding transcript	Het
Ccdc40	A	G	11: 119,144,447 (GRCm39)	D924G	possibly damaging	Het
Ccm2l	A	T	2: 152,921,422 (GRCm39)	M433L	probably benign	Het
Cd209e	T	C	8: 3,901,181 (GRCm39)	S158G	probably null	Het
Cdkn2a	C	T	4: 89,194,955 (GRCm39)	R153H	unknown	Het
Cfap69	A	G	5: 5,696,934 (GRCm39)		probably null	Het
Col6a5	T	C	9: 105,808,280 (GRCm39)	T923A	unknown	Het
Cybb	C	G	X: 9,316,989 (GRCm39)	D246H	probably benign	Het
Ddrgk1	A	G	2: 130,500,248 (GRCm39)	F216S	probably damaging	Het
Dysf	T	A	6: 84,180,310 (GRCm39)	C1995*	probably null	Het
Epb41l5	G	A	1: 119,523,725 (GRCm39)	P467S	probably benign	Het
Extl1	G	A	4: 134,091,978 (GRCm39)	L292F	probably damaging	Het
Fsd1	A	G	17: 56,303,257 (GRCm39)	N409D	possibly damaging	Het
Gm15455	A	T	1: 33,876,803 (GRCm39)		noncoding transcript	Het
Gm8894	A	G	14: 55,658,172 (GRCm39)		noncoding transcript	Het
Gtf3c2	C	T	5: 31,314,921 (GRCm39)	S942N	probably benign	Het
Gvin-ps3	T	C	7: 105,681,041 (GRCm39)		noncoding transcript	Het
H2-Ab1	A	T	17: 34,486,441 (GRCm39)	T167S	possibly damaging	Het
Ighv8-9	C	T	12: 115,432,134 (GRCm39)	R59H	probably damaging	Het
Igsf9b	G	A	9: 27,228,752 (GRCm39)	V171I	probably benign	Het
Il31ra	C	T	13: 112,664,079 (GRCm39)	E533K	possibly damaging	Het
Iqgap1	A	C	7: 80,385,261 (GRCm39)	L1022R	probably damaging	Het
Kcna4	T	C	2: 107,126,813 (GRCm39)	F516L	probably damaging	Het
Kmt2e	A	G	5: 23,668,081 (GRCm39)	T47A	possibly damaging	Het
L3mbtl2	A	G	15: 81,548,175 (GRCm39)		probably benign	Het
Ldhb-ps	C	A	19: 21,915,601 (GRCm39)		noncoding transcript	Het
Lipo3	T	A	19: 33,757,749 (GRCm39)	Q240L	probably benign	Het
Lrrk2	A	G	15: 91,597,031 (GRCm39)	D541G	probably benign	Het
Med9	T	A	11: 59,839,266 (GRCm39)	N58K	probably benign	Het
Meig1	A	G	2: 3,410,251 (GRCm39)	V83A	possibly damaging	Het
Natd1	A	C	11: 60,797,822 (GRCm39)	C34W	probably damaging	Het
Nup205	T	A	6: 35,178,996 (GRCm39)	C689S	probably damaging	Het
Or4c104	T	A	2: 88,586,219 (GRCm39)	K267*	probably null	Het
Or52u1	T	C	7: 104,237,167 (GRCm39)	M52T	probably benign	Het
Or5d35	T	C	2: 87,855,204 (GRCm39)	M46T	possibly damaging	Het
Or6a2	G	A	7: 106,600,293 (GRCm39)	A258V	probably benign	Het
Pdgfrb	A	C	18: 61,212,759 (GRCm39)	S888R	probably damaging	Het
Plppr4	T	C	3: 117,115,979 (GRCm39)	E626G	probably damaging	Het
Ppfia3	C	A	7: 44,990,050 (GRCm39)	A1159S	possibly damaging	Het
Pramel32	T	A	4: 88,547,450 (GRCm39)	K74*	probably null	Het
Prex1	A	G	2: 166,480,260 (GRCm39)	V160A	probably benign	Het
Psmb7	C	T	2: 38,478,283 (GRCm39)	C247Y	probably benign	Het
Rbm33	C	T	5: 28,547,435 (GRCm39)		probably null	Het
Rfc5	T	C	5: 117,520,485 (GRCm39)	T236A	probably benign	Het
Sdk1	G	T	5: 141,568,168 (GRCm39)	R122L	probably benign	Het
Sh3bp1	T	C	15: 78,792,195 (GRCm39)	S451P	possibly damaging	Het
Smap1	G	T	1: 23,888,347 (GRCm39)		probably benign	Het
Smc2	T	A	4: 52,462,927 (GRCm39)	V639E	probably damaging	Het
Synpo2l	T	A	14: 20,711,765 (GRCm39)	Q511L	possibly damaging	Het
Taok2	G	A	7: 126,467,304 (GRCm39)	S167L	possibly damaging	Het
Tbc1d17	G	A	7: 44,492,488 (GRCm39)	P392S	probably benign	Het
Tef	T	A	15: 81,707,758 (GRCm39)	I261N	probably damaging	Het
Tmbim1	T	C	1: 74,334,519 (GRCm39)	N14D	possibly damaging	Het
Tmprss11c	T	C	5: 86,404,312 (GRCm39)	K121R	probably benign	Het
Trim36	C	A	18: 46,305,599 (GRCm39)	M461I	probably benign	Het
Trpc1	T	A	9: 95,603,468 (GRCm39)	M355L	probably benign	Het
Tspyl4	A	C	10: 34,173,760 (GRCm39)	D84A	probably benign	Het
Twf1	G	T	15: 94,482,315 (GRCm39)	P144T	probably damaging	Het
Ugt1a7c	T	C	1: 88,023,392 (GRCm39)	C184R	probably damaging	Het
Unc79	C	T	12: 103,013,257 (GRCm39)	P283S	probably damaging	Het
Usp45	T	C	4: 21,796,860 (GRCm39)	C49R	probably benign	Het
Wdr11	T	A	7: 129,210,658 (GRCm39)		probably benign	Het
Wdr27	A	T	17: 15,152,816 (GRCm39)	M97K	possibly damaging	Het

Other mutations in Lpar5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01719:Lpar5	APN	6	125,058,969 (GRCm39)	missense	possibly damaging	0.94
IGL01830:Lpar5	APN	6	125,058,785 (GRCm39)	missense	probably benign	0.01
IGL01975:Lpar5	APN	6	125,058,750 (GRCm39)	missense	probably damaging	0.99
IGL02021:Lpar5	APN	6	125,058,955 (GRCm39)	nonsense	probably null
IGL02718:Lpar5	APN	6	125,059,207 (GRCm39)	missense	probably damaging	1.00
IGL03027:Lpar5	APN	6	125,059,203 (GRCm39)	missense	probably damaging	1.00
IGL03300:Lpar5	APN	6	125,059,203 (GRCm39)	missense	probably damaging	1.00
F5770:Lpar5	UTSW	6	125,058,690 (GRCm39)	missense	possibly damaging	0.88
R0633:Lpar5	UTSW	6	125,058,954 (GRCm39)	missense	probably benign	0.25
R1639:Lpar5	UTSW	6	125,058,564 (GRCm39)	missense	probably damaging	1.00
R1822:Lpar5	UTSW	6	125,058,378 (GRCm39)	missense	possibly damaging	0.76
R2227:Lpar5	UTSW	6	125,058,098 (GRCm39)	critical splice acceptor site	probably null
R4019:Lpar5	UTSW	6	125,058,638 (GRCm39)	missense	probably damaging	1.00
R4288:Lpar5	UTSW	6	125,058,827 (GRCm39)	missense	probably benign	0.00
R4705:Lpar5	UTSW	6	125,059,170 (GRCm39)	missense	possibly damaging	0.64
R5027:Lpar5	UTSW	6	125,059,110 (GRCm39)	missense	possibly damaging	0.69
R6114:Lpar5	UTSW	6	125,058,639 (GRCm39)	missense	probably damaging	1.00
R7197:Lpar5	UTSW	6	125,059,347 (GRCm39)	missense	probably benign	0.00
R7779:Lpar5	UTSW	6	125,059,207 (GRCm39)	missense	probably damaging	1.00
R8193:Lpar5	UTSW	6	125,058,302 (GRCm39)	missense	probably benign
R8264:Lpar5	UTSW	6	125,058,465 (GRCm39)	missense	probably damaging	1.00
R9460:Lpar5	UTSW	6	125,058,234 (GRCm39)	start gained	probably benign
R9628:Lpar5	UTSW	6	125,058,948 (GRCm39)	missense	probably damaging	0.96
V7580:Lpar5	UTSW	6	125,058,690 (GRCm39)	missense	possibly damaging	0.88
V7581:Lpar5	UTSW	6	125,058,690 (GRCm39)	missense	possibly damaging	0.88
V7582:Lpar5	UTSW	6	125,058,690 (GRCm39)	missense	possibly damaging	0.88
Z1176:Lpar5	UTSW	6	125,059,035 (GRCm39)	missense	probably damaging	1.00
Z1176:Lpar5	UTSW	6	125,058,342 (GRCm39)	missense	possibly damaging	0.92
Z1177:Lpar5	UTSW	6	125,058,981 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TAACACCCTTCGCAACCTGG -3'
(R):5'- CATACTGGAGCAGGGTTTCTCTG -3'

Sequencing Primer
(F):5'- CGCTGAATACCAGGCCTTTG -3'
(R):5'- CTGTGTGATAATCAGAAGCTAAAGC -3'

Posted On

2015-12-29