Incidental Mutation 'R4789:Taf3'
ID 367293
Institutional Source Beutler Lab
Gene Symbol Taf3
Ensembl Gene ENSMUSG00000025782
Gene Name TATA-box binding protein associated factor 3
Synonyms 4933439M23Rik, mTAFII140
Accession Numbers
Essential gene? Probably essential (E-score: 0.956) question?
Stock # R4789 (G1)
Quality Score 225
Status Not validated
Chromosome 2
Chromosomal Location 9919363-10053407 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 9956770 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 466 (T466A)
Ref Sequence ENSEMBL: ENSMUSP00000026888 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000026888] [ENSMUST00000114909]
AlphaFold Q5HZG4
PDB Structure Solution structure of the free TAF3 PHD domain [SOLUTION NMR]
Solution structure of the TAF3 PHD domain in complex with a H3K4me3 peptide [SOLUTION NMR]
Predicted Effect probably damaging
Transcript: ENSMUST00000026888
AA Change: T466A

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000026888
Gene: ENSMUSG00000025782
AA Change: T466A

DomainStartEndE-ValueType
BTP 3 79 1.94e-34 SMART
low complexity region 159 173 N/A INTRINSIC
low complexity region 237 253 N/A INTRINSIC
low complexity region 306 325 N/A INTRINSIC
low complexity region 404 423 N/A INTRINSIC
low complexity region 447 461 N/A INTRINSIC
low complexity region 487 505 N/A INTRINSIC
coiled coil region 519 572 N/A INTRINSIC
coiled coil region 611 651 N/A INTRINSIC
coiled coil region 692 751 N/A INTRINSIC
low complexity region 779 790 N/A INTRINSIC
low complexity region 795 821 N/A INTRINSIC
low complexity region 826 837 N/A INTRINSIC
PHD 869 915 4.77e-11 SMART
Predicted Effect probably damaging
Transcript: ENSMUST00000114909
AA Change: T313A

PolyPhen 2 Score 0.966 (Sensitivity: 0.77; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000110559
Gene: ENSMUSG00000025782
AA Change: T313A

DomainStartEndE-ValueType
low complexity region 6 20 N/A INTRINSIC
low complexity region 84 100 N/A INTRINSIC
low complexity region 153 172 N/A INTRINSIC
low complexity region 251 270 N/A INTRINSIC
low complexity region 294 308 N/A INTRINSIC
low complexity region 334 352 N/A INTRINSIC
coiled coil region 366 419 N/A INTRINSIC
coiled coil region 458 498 N/A INTRINSIC
coiled coil region 539 598 N/A INTRINSIC
low complexity region 626 637 N/A INTRINSIC
low complexity region 642 668 N/A INTRINSIC
low complexity region 673 684 N/A INTRINSIC
PHD 716 762 4.77e-11 SMART
Coding Region Coverage
  • 1x: 98.8%
  • 3x: 98.4%
  • 10x: 96.9%
  • 20x: 94.4%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The highly conserved RNA polymerase II transcription factor TFIID (see TAF1; MIM 313650) comprises the TATA box-binding protein (TBP; MIM 600075) and a set of TBP-associated factors (TAFs), including TAF3. TAFs contribute to promoter recognition and selectivity and act as antiapoptotic factors (Gangloff et al., 2001 [PubMed 11438666]).[supplied by OMIM, May 2009]
Allele List at MGI
Other mutations in this stock
Total: 70 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1110004F10Rik C A 7: 115,692,757 (GRCm39) D20E probably benign Het
Abcb9 T A 5: 124,216,853 (GRCm39) M455L probably benign Het
Add2 G A 6: 86,095,752 (GRCm39) V475M probably benign Het
Apoh T A 11: 108,300,064 (GRCm39) Y238N probably damaging Het
Arpp21 A G 9: 111,896,360 (GRCm39) S681P probably benign Het
Atp1a3 A C 7: 24,698,389 (GRCm39) F149C probably damaging Het
B9d1 A G 11: 61,397,186 (GRCm39) D27G probably benign Het
Bfar T A 16: 13,503,001 (GRCm39) M1K probably null Het
Bok T C 1: 93,616,963 (GRCm39) V103A probably damaging Het
Brca1 A C 11: 101,414,758 (GRCm39) H1125Q probably benign Het
Card9 T A 2: 26,247,632 (GRCm39) M218L probably damaging Het
Cers1 T C 8: 70,776,018 (GRCm39) V303A probably damaging Het
Col6a5 T C 9: 105,814,534 (GRCm39) I493V unknown Het
Coro7 T C 16: 4,446,085 (GRCm39) Y880C probably damaging Het
Cyp2b19 T C 7: 26,463,801 (GRCm39) Y318H probably benign Het
Dennd3 T A 15: 73,394,131 (GRCm39) L52Q probably damaging Het
Dlat A T 9: 50,570,670 (GRCm39) C33S probably benign Het
Dmxl2 T A 9: 54,287,099 (GRCm39) Q2646L probably benign Het
Dnah3 T C 7: 119,610,295 (GRCm39) N1703D probably damaging Het
Dock10 T A 1: 80,518,998 (GRCm39) H1241L probably damaging Het
Fbxl17 T G 17: 63,794,910 (GRCm39) I391L probably benign Het
Fdxacb1 A G 9: 50,681,418 (GRCm39) D113G possibly damaging Het
Flii A G 11: 60,605,919 (GRCm39) S1185P probably benign Het
Gm14496 A T 2: 181,637,577 (GRCm39) Q217L possibly damaging Het
Heatr9 A T 11: 83,410,018 (GRCm39) D74E probably benign Het
Heca C A 10: 17,783,895 (GRCm39) E91* probably null Het
Ikzf4 T G 10: 128,468,575 (GRCm39) T635P probably benign Het
Kif17 C T 4: 138,008,688 (GRCm39) P382S probably damaging Het
Kmt5b T C 19: 3,865,330 (GRCm39) V775A probably benign Het
Mapk8ip2 T A 15: 89,343,241 (GRCm39) F661Y probably damaging Het
Mapkap1 A G 2: 34,423,859 (GRCm39) E111G possibly damaging Het
Med9 T A 11: 59,839,266 (GRCm39) N58K probably benign Het
Mid2 T A X: 139,578,981 (GRCm39) Y61N probably damaging Het
Mief1 T A 15: 80,132,080 (GRCm39) Y50* probably null Het
Mios T C 6: 8,235,429 (GRCm39) M859T probably benign Het
Muc5ac G T 7: 141,352,619 (GRCm39) C702F possibly damaging Het
Nkiras1 T C 14: 18,276,935 (GRCm38) probably benign Het
Or11i1 A C 3: 106,729,608 (GRCm39) I89R possibly damaging Het
Or11i1 T A 3: 106,729,624 (GRCm39) M84L possibly damaging Het
Or56a3b T G 7: 104,771,520 (GRCm39) H285Q probably null Het
Or5ae2 T A 7: 84,506,509 (GRCm39) C311S probably benign Het
Pcsk5 C T 19: 17,410,963 (GRCm39) V1810M probably benign Het
Pex1 T C 5: 3,680,270 (GRCm39) V964A probably damaging Het
Pgm2l1 A T 7: 99,916,794 (GRCm39) M471L probably benign Het
Pkd1l2 T C 8: 117,738,314 (GRCm39) T2182A probably damaging Het
Plscr1l1 G A 9: 92,233,084 (GRCm39) C69Y probably damaging Het
Polr1b T A 2: 128,951,257 (GRCm39) I290K probably benign Het
Prkg1 T A 19: 31,563,045 (GRCm39) M119L probably damaging Het
Rbl1 A G 2: 157,019,275 (GRCm39) V490A probably benign Het
Shtn1 G C 19: 59,039,305 (GRCm39) R45G probably damaging Het
Slc10a6 T A 5: 103,776,848 (GRCm39) Y84F probably benign Het
Slc25a23 T C 17: 57,366,597 (GRCm39) D26G probably damaging Het
Slc41a2 T C 10: 83,152,320 (GRCm39) K52E probably damaging Het
Slc4a5 T C 6: 83,247,951 (GRCm39) F501L probably benign Het
Slfn5 T A 11: 82,847,226 (GRCm39) M37K probably benign Het
Sptbn1 A C 11: 30,067,759 (GRCm39) F1818L probably benign Het
Thbs2 C T 17: 14,891,750 (GRCm39) G929D probably damaging Het
Tmc3 A T 7: 83,271,746 (GRCm39) D995V probably damaging Het
Tmem262 T C 19: 6,130,452 (GRCm39) F59L possibly damaging Het
Triobp A G 15: 78,875,228 (GRCm39) D137G probably damaging Het
Tspear T C 10: 77,702,199 (GRCm39) F211L possibly damaging Het
Ttn A T 2: 76,728,670 (GRCm39) probably benign Het
Ugt2b5 T A 5: 87,287,550 (GRCm39) M206L probably benign Het
Ush1g A T 11: 115,209,466 (GRCm39) S243T probably damaging Het
Usp19 A T 9: 108,370,433 (GRCm39) T86S possibly damaging Het
Wdhd1 A G 14: 47,506,149 (GRCm39) V255A probably benign Het
Wdr11 G A 7: 129,220,394 (GRCm39) W594* probably null Het
Wnk3 T A X: 149,993,933 (GRCm39) Y331* probably null Het
Zfp429 A T 13: 67,538,523 (GRCm39) I307K probably benign Het
Zkscan14 T A 5: 145,132,444 (GRCm39) K362N probably damaging Het
Other mutations in Taf3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00839:Taf3 APN 2 9,957,728 (GRCm39) missense probably damaging 1.00
IGL01620:Taf3 APN 2 9,957,472 (GRCm39) missense probably benign 0.00
IGL02084:Taf3 APN 2 10,047,330 (GRCm39) missense probably benign 0.08
IGL02229:Taf3 APN 2 9,957,645 (GRCm39) missense probably damaging 1.00
IGL02891:Taf3 APN 2 9,926,038 (GRCm39) missense probably damaging 1.00
IGL03173:Taf3 APN 2 9,957,738 (GRCm39) missense probably damaging 0.99
IGL03302:Taf3 APN 2 9,956,942 (GRCm39) missense probably damaging 1.00
Bathtub UTSW 2 9,956,469 (GRCm39) missense possibly damaging 0.89
Howard UTSW 2 9,955,971 (GRCm39) missense probably damaging 0.99
President UTSW 2 9,956,164 (GRCm39) missense probably damaging 0.98
R0344:Taf3 UTSW 2 9,956,709 (GRCm39) missense probably benign 0.05
R0348:Taf3 UTSW 2 10,047,455 (GRCm39) missense probably benign 0.05
R0506:Taf3 UTSW 2 9,945,804 (GRCm39) missense probably benign 0.00
R1724:Taf3 UTSW 2 9,957,177 (GRCm39) missense probably benign 0.01
R2151:Taf3 UTSW 2 9,956,377 (GRCm39) missense possibly damaging 0.82
R2154:Taf3 UTSW 2 9,956,377 (GRCm39) missense possibly damaging 0.82
R2495:Taf3 UTSW 2 9,957,644 (GRCm39) missense probably damaging 1.00
R3702:Taf3 UTSW 2 9,957,372 (GRCm39) missense possibly damaging 0.74
R3739:Taf3 UTSW 2 9,956,469 (GRCm39) missense possibly damaging 0.89
R3921:Taf3 UTSW 2 10,053,109 (GRCm39) missense probably benign 0.06
R4097:Taf3 UTSW 2 9,957,178 (GRCm39) missense possibly damaging 0.54
R4602:Taf3 UTSW 2 9,957,468 (GRCm39) missense probably damaging 0.96
R4615:Taf3 UTSW 2 9,956,901 (GRCm39) missense probably damaging 1.00
R4679:Taf3 UTSW 2 10,053,375 (GRCm39) utr 5 prime probably benign
R4801:Taf3 UTSW 2 9,955,934 (GRCm39) missense possibly damaging 0.72
R4802:Taf3 UTSW 2 9,955,934 (GRCm39) missense possibly damaging 0.72
R5201:Taf3 UTSW 2 9,956,995 (GRCm39) missense probably damaging 1.00
R5522:Taf3 UTSW 2 9,945,816 (GRCm39) missense probably damaging 1.00
R5629:Taf3 UTSW 2 9,922,989 (GRCm39) missense probably damaging 1.00
R6427:Taf3 UTSW 2 9,956,164 (GRCm39) missense probably damaging 0.98
R6492:Taf3 UTSW 2 9,955,971 (GRCm39) missense probably damaging 0.99
R6804:Taf3 UTSW 2 9,923,028 (GRCm39) missense possibly damaging 0.91
R7282:Taf3 UTSW 2 9,956,253 (GRCm39) missense probably damaging 0.96
R7293:Taf3 UTSW 2 9,956,901 (GRCm39) missense probably damaging 0.98
R7368:Taf3 UTSW 2 9,921,188 (GRCm39) missense unknown
R7637:Taf3 UTSW 2 9,945,804 (GRCm39) missense probably benign 0.00
R7686:Taf3 UTSW 2 9,956,299 (GRCm39) missense probably damaging 1.00
R8251:Taf3 UTSW 2 9,922,962 (GRCm39) missense possibly damaging 0.92
R9167:Taf3 UTSW 2 9,945,804 (GRCm39) missense probably benign 0.00
R9402:Taf3 UTSW 2 9,955,923 (GRCm39) critical splice donor site probably null
R9621:Taf3 UTSW 2 9,923,070 (GRCm39) missense unknown
Predicted Primers PCR Primer
(F):5'- TCTTTACATCCACAGACGAAGGC -3'
(R):5'- TCCATCGATGCTGTGATCG -3'

Sequencing Primer
(F):5'- TCCACAGACGAAGGCAGCTTG -3'
(R):5'- GAGCCAGACCCTTTCGAGTTTTC -3'
Posted On 2015-12-29