Incidental Mutation 'R0413:Gpcpd1'
ID 36759
Institutional Source Beutler Lab
Gene Symbol Gpcpd1
Ensembl Gene ENSMUSG00000027346
Gene Name glycerophosphocholine phosphodiesterase 1
Synonyms Prei4, 2310004G06Rik, 2310032D16Rik
MMRRC Submission 038615-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.936) question?
Stock # R0413 (G1)
Quality Score 128
Status Validated
Chromosome 2
Chromosomal Location 132371002-132420173 bp(-) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) A to T at 132406543 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000116949 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028822] [ENSMUST00000060955] [ENSMUST00000110135] [ENSMUST00000110136] [ENSMUST00000110142] [ENSMUST00000124107] [ENSMUST00000145694] [ENSMUST00000149854] [ENSMUST00000148833]
AlphaFold Q8C0L9
Predicted Effect probably benign
Transcript: ENSMUST00000028822
SMART Domains Protein: ENSMUSP00000028822
Gene: ENSMUSG00000027346

DomainStartEndE-ValueType
Pfam:GDPD 142 432 1.3e-61 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000060955
SMART Domains Protein: ENSMUSP00000062221
Gene: ENSMUSG00000027346

DomainStartEndE-ValueType
CBM_2 3 110 3.78e-29 SMART
low complexity region 142 160 N/A INTRINSIC
low complexity region 167 175 N/A INTRINSIC
Pfam:GDPD 326 615 5.3e-61 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000110135
SMART Domains Protein: ENSMUSP00000105762
Gene: ENSMUSG00000027346

DomainStartEndE-ValueType
CBM_2 3 110 3.78e-29 SMART
low complexity region 146 155 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000110136
SMART Domains Protein: ENSMUSP00000105763
Gene: ENSMUSG00000027346

DomainStartEndE-ValueType
Pfam:GDPD 142 431 4.1e-59 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000110142
SMART Domains Protein: ENSMUSP00000105769
Gene: ENSMUSG00000027346

DomainStartEndE-ValueType
CBM_2 3 110 3.78e-29 SMART
low complexity region 142 160 N/A INTRINSIC
low complexity region 167 175 N/A INTRINSIC
Pfam:GDPD 326 615 6.1e-63 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000124107
SMART Domains Protein: ENSMUSP00000122751
Gene: ENSMUSG00000027346

DomainStartEndE-ValueType
CBM_2 3 110 3.78e-29 SMART
low complexity region 142 160 N/A INTRINSIC
low complexity region 167 175 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000145694
SMART Domains Protein: ENSMUSP00000116457
Gene: ENSMUSG00000027346

DomainStartEndE-ValueType
CBM_2 3 110 3.78e-29 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000149854
SMART Domains Protein: ENSMUSP00000116949
Gene: ENSMUSG00000027346

DomainStartEndE-ValueType
CBM_2 3 94 5.54e-13 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000140867
Predicted Effect probably benign
Transcript: ENSMUST00000148833
SMART Domains Protein: ENSMUSP00000116156
Gene: ENSMUSG00000027346

DomainStartEndE-ValueType
CBM_2 3 99 1.02e-11 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000131617
Coding Region Coverage
  • 1x: 99.3%
  • 3x: 98.6%
  • 10x: 97.0%
  • 20x: 94.9%
Validation Efficiency 99% (99/100)
Allele List at MGI
Other mutations in this stock
Total: 97 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcb11 A G 2: 69,158,355 (GRCm39) probably benign Het
Adh1 C T 3: 137,986,193 (GRCm39) T60I probably benign Het
Agtpbp1 T A 13: 59,661,966 (GRCm39) I282F probably damaging Het
Arih2 G T 9: 108,493,916 (GRCm39) Q166K probably damaging Het
Cacna1s A G 1: 136,025,947 (GRCm39) T1031A probably benign Het
Ccdc102a C A 8: 95,629,914 (GRCm39) E542D probably benign Het
Cdk1 T C 10: 69,180,929 (GRCm39) I94V probably benign Het
Cep290 C T 10: 100,359,176 (GRCm39) Q969* probably null Het
Cilp2 A G 8: 70,335,643 (GRCm39) S452P probably benign Het
Col12a1 T C 9: 79,606,642 (GRCm39) T594A probably damaging Het
Cpox A G 16: 58,491,232 (GRCm39) T148A possibly damaging Het
Csf3r A G 4: 125,933,460 (GRCm39) probably benign Het
Csmd1 A T 8: 16,760,530 (GRCm39) C202S probably damaging Het
Dlgap4 T C 2: 156,604,746 (GRCm39) S261P probably damaging Het
Dnah9 T A 11: 65,998,961 (GRCm39) Y1029F probably damaging Het
Dok5 T C 2: 170,671,880 (GRCm39) probably benign Het
Dusp11 A T 6: 85,929,352 (GRCm39) probably benign Het
Edar T C 10: 58,465,262 (GRCm39) N34D probably benign Het
Efcab7 C T 4: 99,766,943 (GRCm39) T56I probably damaging Het
Entpd1 G A 19: 40,699,729 (GRCm39) V47I probably benign Het
Ephx4 A G 5: 107,551,601 (GRCm39) N62S probably benign Het
Etaa1 A T 11: 17,896,350 (GRCm39) L589* probably null Het
Fam135b T A 15: 71,335,670 (GRCm39) N508I probably benign Het
Fam193a T C 5: 34,623,552 (GRCm39) V27A possibly damaging Het
Fmnl1 A G 11: 103,084,889 (GRCm39) probably benign Het
Fstl1 A C 16: 37,641,516 (GRCm39) probably null Het
Gbp4 G A 5: 105,268,972 (GRCm39) R394C possibly damaging Het
Gemin4 T C 11: 76,102,148 (GRCm39) Y871C probably benign Het
Get1 T G 16: 95,954,217 (GRCm39) S105R probably benign Het
Gm7247 T C 14: 51,760,929 (GRCm39) V166A probably benign Het
Gpnmb A G 6: 49,019,737 (GRCm39) D36G probably benign Het
Ido2 C T 8: 25,048,159 (GRCm39) probably null Het
Igfn1 G A 1: 135,895,334 (GRCm39) T1744I probably benign Het
Inf2 T G 12: 112,568,110 (GRCm39) F221V probably damaging Het
Itga10 T A 3: 96,556,375 (GRCm39) I170N probably damaging Het
Lrp6 A T 6: 134,484,587 (GRCm39) D345E probably damaging Het
Macf1 A T 4: 123,366,062 (GRCm39) S2900T probably benign Het
Med13 C A 11: 86,190,033 (GRCm39) probably benign Het
Morc3 T C 16: 93,667,362 (GRCm39) V507A probably damaging Het
Myadm AC ACC 7: 3,345,276 (GRCm39) probably null Het
Myl6 C T 10: 128,328,091 (GRCm39) probably benign Het
Mylk T C 16: 34,742,314 (GRCm39) V942A probably benign Het
Myorg G T 4: 41,498,585 (GRCm39) H348Q probably benign Het
Ncdn G T 4: 126,644,327 (GRCm39) T165K possibly damaging Het
Ncf1 T C 5: 134,251,656 (GRCm39) probably benign Het
Neb T C 2: 52,180,751 (GRCm39) probably benign Het
Nid1 T A 13: 13,656,681 (GRCm39) I604N probably benign Het
Nsrp1 T C 11: 76,936,997 (GRCm39) R400G probably benign Het
Nup43 T G 10: 7,546,791 (GRCm39) I137S probably benign Het
Nynrin A G 14: 56,109,648 (GRCm39) N1585S possibly damaging Het
Obscn T A 11: 58,893,823 (GRCm39) Y6748F probably benign Het
Omg A G 11: 79,393,661 (GRCm39) S66P possibly damaging Het
Or13a27 A T 7: 139,925,108 (GRCm39) S265T possibly damaging Het
Or2y1d T C 11: 49,322,212 (GRCm39) V303A possibly damaging Het
Or4c15 A G 2: 88,759,906 (GRCm39) V251A probably benign Het
Or51b6b A T 7: 103,309,957 (GRCm39) F167I possibly damaging Het
Or52z1 A G 7: 103,437,362 (GRCm39) Y41H probably damaging Het
Or5ak22 T C 2: 85,230,019 (GRCm39) N286S probably damaging Het
Or8g27 A G 9: 39,129,566 (GRCm39) I304M probably benign Het
Or8k24 G A 2: 86,216,058 (GRCm39) R235C probably benign Het
Ormdl1 C T 1: 53,347,978 (GRCm39) probably benign Het
Ovch2 T A 7: 107,381,243 (GRCm39) I552L probably benign Het
Pcare T G 17: 72,059,212 (GRCm39) D155A probably benign Het
Pcsk9 G T 4: 106,311,538 (GRCm39) T231N probably damaging Het
Pgpep1 T C 8: 71,110,100 (GRCm39) N22S probably damaging Het
Plb1 T C 5: 32,512,706 (GRCm39) F1355L probably damaging Het
Plcg1 G T 2: 160,603,349 (GRCm39) L1173F probably damaging Het
Plch2 A T 4: 155,091,373 (GRCm39) probably null Het
Ppp1r3g T A 13: 36,153,331 (GRCm39) F250L probably damaging Het
Prkcg A G 7: 3,368,095 (GRCm39) I381V probably benign Het
Pum2 C T 12: 8,763,464 (GRCm39) A207V probably benign Het
Rabac1 T C 7: 24,669,607 (GRCm39) E166G probably damaging Het
Rad21l G A 2: 151,493,851 (GRCm39) S450L probably benign Het
Rangap1 ACACTCA ACA 15: 81,600,876 (GRCm39) probably null Het
Reg3b G T 6: 78,348,824 (GRCm39) C40F probably damaging Het
Rfx2 A G 17: 57,091,418 (GRCm39) probably benign Het
Rrp15 G A 1: 186,481,346 (GRCm39) probably benign Het
Schip1 G T 3: 68,401,946 (GRCm39) G36C probably damaging Het
Sec61a2 A T 2: 5,881,165 (GRCm39) probably benign Het
Sema5a A G 15: 32,669,590 (GRCm39) K705E probably damaging Het
Setx A G 2: 29,029,290 (GRCm39) Y186C probably damaging Het
Slc22a23 T C 13: 34,367,115 (GRCm39) E631G probably damaging Het
Slc5a5 T C 8: 71,344,319 (GRCm39) T134A possibly damaging Het
Stx7 T C 10: 24,057,492 (GRCm39) S173P probably damaging Het
Sybu T C 15: 44,536,668 (GRCm39) T353A probably damaging Het
Syde2 T A 3: 145,712,887 (GRCm39) N1008K probably damaging Het
Tiam1 T C 16: 89,606,253 (GRCm39) probably benign Het
Timm10b G A 7: 105,327,537 (GRCm39) E61K probably benign Het
Tm2d1 A G 4: 98,253,810 (GRCm39) I121T probably damaging Het
Trim75 T C 8: 65,435,892 (GRCm39) E186G probably benign Het
Tti1 T C 2: 157,837,396 (GRCm39) K895E probably benign Het
Vmn1r43 A G 6: 89,846,830 (GRCm39) S219P probably damaging Het
Vmn2r73 A T 7: 85,521,087 (GRCm39) S294T possibly damaging Het
Vmn2r94 A T 17: 18,464,080 (GRCm39) F737I probably damaging Het
Vsx2 A T 12: 84,616,777 (GRCm39) T21S probably benign Het
Zfp462 G T 4: 55,010,534 (GRCm39) R833S probably damaging Het
Zfpl1 G A 19: 6,132,482 (GRCm39) P143L probably damaging Het
Other mutations in Gpcpd1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00542:Gpcpd1 APN 2 132,398,903 (GRCm39) splice site probably null
IGL00672:Gpcpd1 APN 2 132,372,468 (GRCm39) utr 3 prime probably benign
IGL00676:Gpcpd1 APN 2 132,395,931 (GRCm39) missense probably damaging 1.00
IGL00832:Gpcpd1 APN 2 132,388,770 (GRCm39) missense probably damaging 1.00
IGL00931:Gpcpd1 APN 2 132,380,038 (GRCm39) missense probably benign 0.00
IGL01309:Gpcpd1 APN 2 132,392,244 (GRCm39) missense probably damaging 0.97
IGL01960:Gpcpd1 APN 2 132,381,818 (GRCm39) critical splice donor site probably null
IGL02110:Gpcpd1 APN 2 132,372,530 (GRCm39) nonsense probably null
IGL02267:Gpcpd1 APN 2 132,410,630 (GRCm39) missense probably damaging 1.00
IGL02570:Gpcpd1 APN 2 132,389,605 (GRCm39) missense probably benign 0.01
IGL02588:Gpcpd1 APN 2 132,376,673 (GRCm39) missense probably damaging 1.00
IGL03306:Gpcpd1 APN 2 132,375,993 (GRCm39) critical splice donor site probably null
Baependi UTSW 2 132,386,355 (GRCm39) missense probably damaging 1.00
R1876:Gpcpd1 UTSW 2 132,376,673 (GRCm39) missense probably damaging 1.00
R4276:Gpcpd1 UTSW 2 132,382,207 (GRCm39) missense probably damaging 0.99
R4571:Gpcpd1 UTSW 2 132,392,270 (GRCm39) missense probably benign 0.05
R4849:Gpcpd1 UTSW 2 132,376,019 (GRCm39) missense probably damaging 1.00
R4930:Gpcpd1 UTSW 2 132,388,794 (GRCm39) missense probably damaging 1.00
R5060:Gpcpd1 UTSW 2 132,386,355 (GRCm39) missense probably damaging 1.00
R5081:Gpcpd1 UTSW 2 132,389,622 (GRCm39) missense probably benign 0.17
R5148:Gpcpd1 UTSW 2 132,376,110 (GRCm39) nonsense probably null
R5189:Gpcpd1 UTSW 2 132,395,892 (GRCm39) missense probably damaging 1.00
R5344:Gpcpd1 UTSW 2 132,400,597 (GRCm39) intron probably benign
R5623:Gpcpd1 UTSW 2 132,376,637 (GRCm39) missense probably damaging 1.00
R6086:Gpcpd1 UTSW 2 132,380,034 (GRCm39) missense probably damaging 1.00
R6787:Gpcpd1 UTSW 2 132,379,758 (GRCm39) intron probably benign
R6885:Gpcpd1 UTSW 2 132,395,994 (GRCm39) missense possibly damaging 0.56
R7223:Gpcpd1 UTSW 2 132,375,976 (GRCm39) missense probably benign 0.00
R7261:Gpcpd1 UTSW 2 132,410,619 (GRCm39) missense probably damaging 0.97
R7900:Gpcpd1 UTSW 2 132,376,659 (GRCm39) missense probably damaging 0.99
R8120:Gpcpd1 UTSW 2 132,395,943 (GRCm39) missense probably damaging 1.00
R8494:Gpcpd1 UTSW 2 132,386,355 (GRCm39) missense probably damaging 0.97
R9594:Gpcpd1 UTSW 2 132,388,848 (GRCm39) missense possibly damaging 0.80
X0018:Gpcpd1 UTSW 2 132,376,689 (GRCm39) missense probably damaging 1.00
X0060:Gpcpd1 UTSW 2 132,376,701 (GRCm39) missense probably damaging 1.00
X0066:Gpcpd1 UTSW 2 132,386,315 (GRCm39) missense probably benign 0.33
Predicted Primers PCR Primer
(F):5'- GCATTTATGGGGAAGCTCCAAGAGG -3'
(R):5'- TGGGCTAATTGCTGCATTCCCAC -3'

Sequencing Primer
(F):5'- CCCAGGAAAATGTCTGAACTATG -3'
(R):5'- GCAAGCCTGGAGTTAGGTC -3'
Posted On 2013-05-09