Mutagenetix > Incidental Mutation

Incidental Mutation 'R4779:Spata13'

368178

Institutional Source

Beutler Lab

Gene Symbol

Spata13

Ensembl Gene

ENSMUSG00000021990

Gene Name

spermatogenesis associated 13

Synonyms

ESTM11

MMRRC Submission

045240-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4779 (G1)

Quality Score

211

Status

Validated

Chromosome

Chromosomal Location

60871450-61002005 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to A at 60991356 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Stop codon at position 366 (W366*)

Ref Sequence

ENSEMBL: ENSMUSP00000123888 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022566] [ENSMUST00000160973] [ENSMUST00000162945]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000022566
AA Change: W1036*

SMART Domains

Protein: ENSMUSP00000022566
Gene: ENSMUSG00000021990
AA Change: W1036*

Domain	Start	End	E-Value	Type
low complexity region	307	320	N/A	INTRINSIC
low complexity region	354	370	N/A	INTRINSIC
low complexity region	426	450	N/A	INTRINSIC
low complexity region	453	462	N/A	INTRINSIC
low complexity region	540	557	N/A	INTRINSIC
low complexity region	571	584	N/A	INTRINSIC
low complexity region	604	623	N/A	INTRINSIC
SH3	742	797	4.92e-16	SMART
RhoGEF	836	1015	1.22e-58	SMART
PH	1048	1155	1.16e-9	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000160973
AA Change: W1036*

SMART Domains

Protein: ENSMUSP00000123928
Gene: ENSMUSG00000021990
AA Change: W1036*

Domain	Start	End	E-Value	Type
low complexity region	307	320	N/A	INTRINSIC
low complexity region	354	370	N/A	INTRINSIC
low complexity region	426	450	N/A	INTRINSIC
low complexity region	453	462	N/A	INTRINSIC
low complexity region	540	557	N/A	INTRINSIC
low complexity region	571	584	N/A	INTRINSIC
low complexity region	604	623	N/A	INTRINSIC
SH3	742	797	4.92e-16	SMART
RhoGEF	836	1015	1.22e-58	SMART
PH	1048	1155	1.16e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000162131

SMART Domains

Protein: ENSMUSP00000124586
Gene: ENSMUSG00000021990

Domain	Start	End	E-Value	Type
low complexity region	16	33	N/A	INTRINSIC
low complexity region	47	60	N/A	INTRINSIC
low complexity region	80	99	N/A	INTRINSIC
SH3	208	263	4.92e-16	SMART
Blast:RhoGEF	302	340	7e-19	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000162939

Predicted Effect

probably null
Transcript: ENSMUST00000162945
AA Change: W366*

SMART Domains

Protein: ENSMUSP00000123888
Gene: ENSMUSG00000021990
AA Change: W366*

Domain	Start	End	E-Value	Type
SH3	72	127	4.92e-16	SMART
RhoGEF	166	345	1.22e-58	SMART
PH	378	485	1.16e-9	SMART

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.7%
20x: 93.8%

Validation Efficiency

98% (95/97)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele are viable, fertile and overtly normal but show a significant reduction in the number and size of intestinal adenomas in conjunction with Apc^Min heterozygotes. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 87 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930562C15Rik	T	A	16: 4,667,613 (GRCm39)	S335T	unknown	Het
4933421I07Rik	T	A	7: 42,097,455 (GRCm39)	H13L	possibly damaging	Het
6030468B19Rik	A	G	11: 117,696,834 (GRCm39)	T185A	probably benign	Het
Abcc1	T	A	16: 14,228,635 (GRCm39)	V294E	probably benign	Het
Abhd16b	A	G	2: 181,135,253 (GRCm39)	T52A	possibly damaging	Het
Actl7a	A	T	4: 56,743,632 (GRCm39)	N53I	probably benign	Het
Ankmy1	T	C	1: 92,814,445 (GRCm39)	E354G	probably benign	Het
Arap1	T	C	7: 101,053,574 (GRCm39)	F1301S	probably damaging	Het
Arfgef1	A	T	1: 10,223,958 (GRCm39)	W1447R	probably damaging	Het
Atoh7	ATGGCGCT	AT	10: 62,936,187 (GRCm39)		probably benign	Het
Ccl24	T	A	5: 135,601,811 (GRCm39)	T6S	possibly damaging	Het
Cep152	G	T	2: 125,410,812 (GRCm39)	P1292Q	possibly damaging	Het
Cfap46	T	C	7: 139,239,731 (GRCm39)		probably benign	Het
Chd6	A	T	2: 160,791,477 (GRCm39)	S2627T	probably damaging	Het
Chd8	A	T	14: 52,468,963 (GRCm39)	S552T	probably damaging	Het
Ciita	C	A	16: 10,329,230 (GRCm39)	L502M	probably damaging	Het
Clic1	T	C	17: 35,271,463 (GRCm39)	F31S	probably damaging	Het
Cntnap1	T	A	11: 101,068,898 (GRCm39)	I147N	possibly damaging	Het
Cplane1	T	C	15: 8,248,322 (GRCm39)	S1624P	probably benign	Het
Crispld1	T	A	1: 17,819,831 (GRCm39)	D276E	probably benign	Het
Cspg4	A	T	9: 56,793,092 (GRCm39)	N276Y	probably damaging	Het
Cspg4b	A	T	13: 113,504,870 (GRCm39)	N2000Y	possibly damaging	Het
Cwf19l2	A	G	9: 3,410,035 (GRCm39)	M55V	possibly damaging	Het
Cyp2c69	T	C	19: 39,866,038 (GRCm39)	N185S	probably benign	Het
Dop1b	T	C	16: 93,553,969 (GRCm39)	I301T	probably damaging	Het
Epg5	T	C	18: 78,034,580 (GRCm39)	V1443A	probably benign	Het
Ephb4	T	C	5: 137,363,964 (GRCm39)	V612A	probably benign	Het
Fcgbp	T	A	7: 27,794,362 (GRCm39)	C1189S	probably damaging	Het
Fgfr2	T	G	7: 129,786,923 (GRCm39)		probably benign	Het
Fmn2	A	G	1: 174,437,461 (GRCm39)	E1144G	probably damaging	Het
Fmo3	T	C	1: 162,796,407 (GRCm39)	Y55C	probably damaging	Het
Frmpd1	A	G	4: 45,229,865 (GRCm39)	T11A	probably damaging	Het
Ghdc	G	T	11: 100,660,929 (GRCm39)	Q79K	possibly damaging	Het
Gm11677	C	T	11: 111,615,537 (GRCm39)		noncoding transcript	Het
Gm5591	T	C	7: 38,221,680 (GRCm39)	T130A	probably damaging	Het
Heg1	T	G	16: 33,540,142 (GRCm39)	D367E	probably benign	Het
Igkv13-84	C	T	6: 68,916,894 (GRCm39)	P64S	probably damaging	Het
Il10rb	T	A	16: 91,211,545 (GRCm39)	S128T	possibly damaging	Het
Il15ra	T	A	2: 11,723,117 (GRCm39)	I47N	probably damaging	Het
Il33	C	A	19: 29,936,311 (GRCm39)	S207*	probably null	Het
Itgb7	A	G	15: 102,132,848 (GRCm39)	Y155H	possibly damaging	Het
Kdm5a	A	G	6: 120,346,060 (GRCm39)		probably benign	Het
Kif11	G	A	19: 37,406,397 (GRCm39)	V987I	probably benign	Het
Krtap19-2	G	A	16: 88,670,762 (GRCm39)		probably benign	Het
Krtap24-1	T	A	16: 88,408,417 (GRCm39)	R236S	probably damaging	Het
L3mbtl2	A	G	15: 81,566,813 (GRCm39)	I406V	probably benign	Het
Lrp2	A	T	2: 69,290,059 (GRCm39)	H3593Q	possibly damaging	Het
Mavs	G	T	2: 131,082,285 (GRCm39)	W56C	probably damaging	Het
Mn1	C	T	5: 111,567,526 (GRCm39)	P499S	probably damaging	Het
Ntn5	T	A	7: 45,340,895 (GRCm39)	C178S	probably damaging	Het
Nufip2	A	G	11: 77,577,154 (GRCm39)	H34R	unknown	Het
Or5p51	T	A	7: 107,444,755 (GRCm39)	M62L	possibly damaging	Het
Or6f2	T	A	7: 139,756,363 (GRCm39)	L110Q	probably damaging	Het
Osbpl10	C	T	9: 114,938,598 (GRCm39)	S86L	probably damaging	Het
Pitpna	T	A	11: 75,511,153 (GRCm39)	M242K	possibly damaging	Het
Pnpla6	T	C	8: 3,572,838 (GRCm39)	V345A	probably benign	Het
Polk	A	G	13: 96,632,999 (GRCm39)		probably null	Het
Polr3k	A	G	2: 181,506,340 (GRCm39)	Y30C	probably damaging	Het
Pramel6	A	G	2: 87,339,941 (GRCm39)	H235R	probably benign	Het
Ptpra	G	A	2: 130,379,537 (GRCm39)	V364I	probably damaging	Het
Recql	A	G	6: 142,309,426 (GRCm39)		probably benign	Het
Ring1	T	C	17: 34,241,263 (GRCm39)		probably benign	Het
Rufy4	T	C	1: 74,186,822 (GRCm39)	C537R	probably damaging	Het
Samsn1	C	A	16: 75,744,177 (GRCm39)		noncoding transcript	Het
Scara5	A	G	14: 65,968,198 (GRCm39)	H157R	probably benign	Het
Sdc3	C	T	4: 130,546,376 (GRCm39)	P245L	probably damaging	Het
Slc18b1	T	A	10: 23,696,767 (GRCm39)	M318K	possibly damaging	Het
Slc26a10	C	T	10: 127,009,224 (GRCm39)	A638T	possibly damaging	Het
Slc35f2	T	A	9: 53,717,013 (GRCm39)	W259R	possibly damaging	Het
Sptlc3	A	G	2: 139,431,509 (GRCm39)	T344A	probably benign	Het
Tap1	T	C	17: 34,412,865 (GRCm39)	V560A	probably damaging	Het
Tbc1d1	T	C	5: 64,435,389 (GRCm39)		probably null	Het
Tlr11	A	G	14: 50,598,707 (GRCm39)	Y231C	possibly damaging	Het
Tmem245	A	T	4: 56,936,468 (GRCm39)	S230T	possibly damaging	Het
Tnnt3	C	T	7: 142,068,020 (GRCm39)		probably benign	Het
Traf7	C	G	17: 24,729,412 (GRCm39)		probably benign	Het
Tshz2	A	G	2: 169,804,601 (GRCm39)		probably benign	Het
Tshz3	T	C	7: 36,468,397 (GRCm39)	S129P	probably damaging	Het
Ttc6	A	T	12: 57,776,237 (GRCm39)	N1727I	probably damaging	Het
Ttc7b	A	G	12: 100,369,621 (GRCm39)	S383P	probably damaging	Het
Tulp3	T	A	6: 128,300,083 (GRCm39)	I448F	probably damaging	Het
Ube3b	T	C	5: 114,542,778 (GRCm39)		probably null	Het
Vav1	G	A	17: 57,603,552 (GRCm39)	V84I	probably damaging	Het
Vav3	A	T	3: 109,416,110 (GRCm39)	K243I	possibly damaging	Het
Vmn1r25	T	A	6: 57,956,011 (GRCm39)	I93F	probably damaging	Het
Vmn2r73	C	T	7: 85,520,923 (GRCm39)	W348*	probably null	Het
Zdbf2	A	G	1: 63,342,397 (GRCm39)	R259G	possibly damaging	Het

Other mutations in Spata13

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02364:Spata13	APN	14	60,928,723 (GRCm39)	missense	probably damaging	1.00
IGL02455:Spata13	APN	14	60,944,163 (GRCm39)	missense	probably benign	0.01
IGL03189:Spata13	APN	14	60,929,063 (GRCm39)	missense	possibly damaging	0.71
IGL03235:Spata13	APN	14	60,989,241 (GRCm39)	missense	probably damaging	1.00
PIT4378001:Spata13	UTSW	14	60,987,445 (GRCm39)	missense	probably damaging	1.00
R0278:Spata13	UTSW	14	60,929,537 (GRCm39)	missense	probably benign	0.02
R0316:Spata13	UTSW	14	60,929,788 (GRCm39)	missense	probably benign
R0458:Spata13	UTSW	14	60,929,492 (GRCm39)	missense	probably damaging	0.98
R1546:Spata13	UTSW	14	60,993,857 (GRCm39)	missense	probably damaging	1.00
R1780:Spata13	UTSW	14	60,929,174 (GRCm39)	missense	probably damaging	0.96
R1791:Spata13	UTSW	14	60,946,908 (GRCm39)	missense	probably damaging	1.00
R1970:Spata13	UTSW	14	60,928,912 (GRCm39)	missense	probably damaging	0.99
R2059:Spata13	UTSW	14	60,997,040 (GRCm39)	missense	possibly damaging	0.79
R2063:Spata13	UTSW	14	60,998,320 (GRCm39)	critical splice acceptor site	probably benign
R2068:Spata13	UTSW	14	60,998,320 (GRCm39)	critical splice acceptor site	probably benign
R2212:Spata13	UTSW	14	60,944,172 (GRCm39)	missense	probably benign	0.00
R2327:Spata13	UTSW	14	60,947,004 (GRCm39)	missense	probably damaging	0.98
R3414:Spata13	UTSW	14	60,944,172 (GRCm39)	missense	probably benign	0.00
R4115:Spata13	UTSW	14	60,929,927 (GRCm39)	missense	probably damaging	1.00
R4276:Spata13	UTSW	14	60,993,745 (GRCm39)	missense	probably damaging	1.00
R4289:Spata13	UTSW	14	60,928,523 (GRCm39)	missense	probably damaging	1.00
R4291:Spata13	UTSW	14	60,947,004 (GRCm39)	missense	probably damaging	0.98
R4293:Spata13	UTSW	14	60,947,004 (GRCm39)	missense	probably damaging	0.98
R4294:Spata13	UTSW	14	60,947,004 (GRCm39)	missense	probably damaging	0.98
R4295:Spata13	UTSW	14	60,947,004 (GRCm39)	missense	probably damaging	0.98
R4780:Spata13	UTSW	14	60,991,356 (GRCm39)	nonsense	probably null
R4838:Spata13	UTSW	14	60,970,628 (GRCm39)	missense	probably benign	0.17
R4997:Spata13	UTSW	14	60,946,908 (GRCm39)	missense	probably damaging	1.00
R5066:Spata13	UTSW	14	60,987,538 (GRCm39)	missense	possibly damaging	0.78
R5399:Spata13	UTSW	14	60,984,990 (GRCm39)	missense	probably benign	0.00
R5685:Spata13	UTSW	14	60,928,652 (GRCm39)	missense	probably benign	0.00
R5708:Spata13	UTSW	14	60,929,452 (GRCm39)	missense	probably damaging	1.00
R5747:Spata13	UTSW	14	60,984,952 (GRCm39)	missense	probably benign	0.00
R6073:Spata13	UTSW	14	60,987,470 (GRCm39)	missense	probably damaging	1.00
R6135:Spata13	UTSW	14	60,993,877 (GRCm39)	missense	probably damaging	0.98
R6233:Spata13	UTSW	14	60,929,456 (GRCm39)	missense	probably benign	0.06
R6782:Spata13	UTSW	14	60,928,912 (GRCm39)	missense	probably damaging	0.99
R6873:Spata13	UTSW	14	60,929,406 (GRCm39)	missense	probably benign
R6958:Spata13	UTSW	14	60,989,300 (GRCm39)	missense	possibly damaging	0.94
R7105:Spata13	UTSW	14	60,991,319 (GRCm39)	missense	probably damaging	0.97
R7286:Spata13	UTSW	14	60,993,871 (GRCm39)	missense	probably damaging	1.00
R7512:Spata13	UTSW	14	60,989,226 (GRCm39)	missense	probably damaging	1.00
R7565:Spata13	UTSW	14	60,989,298 (GRCm39)	missense	probably damaging	1.00
R7608:Spata13	UTSW	14	60,929,956 (GRCm39)	missense	possibly damaging	0.50
R7743:Spata13	UTSW	14	60,993,698 (GRCm39)	missense	probably damaging	0.99
R7795:Spata13	UTSW	14	60,929,291 (GRCm39)	missense	possibly damaging	0.92
R7959:Spata13	UTSW	14	60,993,679 (GRCm39)	nonsense	probably null
R8073:Spata13	UTSW	14	60,928,705 (GRCm39)	missense	probably damaging	1.00
R8304:Spata13	UTSW	14	60,993,957 (GRCm39)	missense	possibly damaging	0.77
R8791:Spata13	UTSW	14	60,929,275 (GRCm39)	missense	probably damaging	1.00
R8889:Spata13	UTSW	14	60,994,030 (GRCm39)	missense	probably benign	0.00
R8893:Spata13	UTSW	14	60,987,524 (GRCm39)	missense	probably damaging	1.00
R8987:Spata13	UTSW	14	60,993,896 (GRCm39)	missense	possibly damaging	0.61
R9513:Spata13	UTSW	14	60,929,849 (GRCm39)	missense	probably benign	0.01
R9548:Spata13	UTSW	14	60,991,303 (GRCm39)	missense	possibly damaging	0.94
R9624:Spata13	UTSW	14	60,944,349 (GRCm39)	missense	probably benign	0.17
R9625:Spata13	UTSW	14	60,944,349 (GRCm39)	missense	probably benign	0.17
R9626:Spata13	UTSW	14	60,944,349 (GRCm39)	missense	probably benign	0.17
R9686:Spata13	UTSW	14	60,989,108 (GRCm39)	missense	probably damaging	1.00
R9723:Spata13	UTSW	14	60,928,498 (GRCm39)	missense	probably damaging	0.98
R9747:Spata13	UTSW	14	60,929,240 (GRCm39)	missense	probably benign
R9774:Spata13	UTSW	14	60,944,196 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GCCTCGTCTAGACCATTAGC -3'
(R):5'- TCATTAAGGTAGTTGTCTTTCAGGCTC -3'

Sequencing Primer
(F):5'- GTCAGCCCTCATGTGTGAAC -3'
(R):5'- GTTGTCTTTCAGGCTCATCAAAATC -3'

Posted On

2015-12-29