Incidental Mutation 'R4819:Trav21-dv12'
ID370073
Institutional Source Beutler Lab
Gene Symbol Trav21-dv12
Ensembl Gene ENSMUSG00000076863
Gene NameT cell receptor alpha variable 21-DV12
SynonymsGm13892
MMRRC Submission 042000-MU
Accession Numbers
Is this an essential gene? Not available question?
Stock #R4819 (G1)
Quality Score225
Status Not validated
Chromosome14
Chromosomal Location53875984-53876751 bp(+) (GRCm38)
Type of Mutationnonsense
DNA Base Change (assembly) T to A at 53876613 bp
ZygosityHeterozygous
Amino Acid Change Tyrosine to Stop codon at position 63 (Y63*)
Ref Sequence ENSEMBL: ENSMUSP00000137998 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000103676] [ENSMUST00000180938] [ENSMUST00000187163]
Predicted Effect probably benign
Transcript: ENSMUST00000103676
SMART Domains Protein: ENSMUSP00000100453
Gene: ENSMUSG00000076864

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
Pfam:ig 26 112 6.7e-7 PFAM
Pfam:V-set 26 112 1.6e-14 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000180938
AA Change: Y63*
SMART Domains Protein: ENSMUSP00000137998
Gene: ENSMUSG00000076863
AA Change: Y63*

DomainStartEndE-ValueType
low complexity region 6 17 N/A INTRINSIC
Pfam:V-set 18 108 2.1e-12 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000187163
SMART Domains Protein: ENSMUSP00000139783
Gene: ENSMUSG00000076864

DomainStartEndE-ValueType
signal peptide 1 17 N/A INTRINSIC
IG_like 37 110 6.4e-5 SMART
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.3%
  • 10x: 96.5%
  • 20x: 93.3%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 53 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca13 T A 11: 9,290,421 N761K possibly damaging Het
Adgrf3 T A 5: 30,198,444 L444F possibly damaging Het
Akap8 G A 17: 32,312,305 R378W probably damaging Het
Amotl2 C T 9: 102,730,071 R693W probably damaging Het
As3mt G T 19: 46,707,529 probably benign Het
Atp6v1e2 A G 17: 86,944,538 V144A probably benign Het
Bfar C T 16: 13,687,467 Q114* probably null Het
Casd1 C T 6: 4,621,225 A261V probably damaging Het
Ccdc36 A G 9: 108,406,678 V189A probably benign Het
Cd177 A T 7: 24,752,271 I440K probably damaging Het
Cfap54 G T 10: 92,836,477 Y2910* probably null Het
Csl A G 10: 99,758,082 F374L possibly damaging Het
Dctn1 G A 6: 83,190,519 R275H probably damaging Het
Derl3 A G 10: 75,893,879 probably null Het
Dst A G 1: 33,968,835 I117V probably benign Het
Edc3 T A 9: 57,748,397 C477S possibly damaging Het
Efs T C 14: 54,917,153 E450G probably damaging Het
Fcrla T A 1: 170,920,939 I212F probably damaging Het
Fsip2 A G 2: 82,988,442 I4840V probably benign Het
Gm14025 G T 2: 129,040,801 N98K probably damaging Het
Gpam T A 19: 55,078,341 I581F probably benign Het
Greb1l A G 18: 10,458,358 D45G probably damaging Het
Heca A G 10: 17,908,072 Y478H probably damaging Het
Hspa9 C T 18: 34,939,388 M561I probably damaging Het
Hyal6 T A 6: 24,734,966 Y299* probably null Het
Ik T A 18: 36,753,257 probably null Het
Khsrp A G 17: 57,023,360 S582P possibly damaging Het
Kif18a A G 2: 109,292,126 D182G probably damaging Het
Krt2 T C 15: 101,811,544 T564A unknown Het
Lig4 A G 8: 9,971,885 S632P probably benign Het
Med1 C T 11: 98,155,432 probably benign Het
Mgat3 T A 15: 80,212,349 I459N probably damaging Het
Mkln1 A T 6: 31,474,486 Q454L probably benign Het
Mn1 A G 5: 111,419,937 E591G possibly damaging Het
Myo5c T A 9: 75,292,202 L1364Q probably damaging Het
Oas1d T C 5: 120,915,717 V80A probably damaging Het
Obscn A T 11: 59,038,848 D5180E probably damaging Het
Pax6 G A 2: 105,692,277 probably null Het
Pcdh15 A C 10: 74,324,389 N446T probably damaging Het
Pcnx2 A T 8: 125,855,230 F922L probably benign Het
Ptpn4 G T 1: 119,659,850 T921K probably benign Het
Selenov A G 7: 28,290,321 probably null Het
Tmem100 A G 11: 90,035,445 T33A probably benign Het
Tmem59 C T 4: 107,187,681 Q66* probably null Het
Trim66 G T 7: 109,457,586 H1121Q probably damaging Het
Trim80 A G 11: 115,447,943 Y533C probably damaging Het
Ttc17 G A 2: 94,364,610 P520L probably damaging Het
Ttn A T 2: 76,791,749 V15483E probably damaging Het
Zdhhc1 CGGGGG CGGGGGG 8: 105,483,744 probably null Het
Zfhx4 C A 3: 5,403,914 T3069K probably benign Het
Zfp281 A G 1: 136,625,710 H142R probably benign Het
Zfp462 G T 4: 55,060,044 R1190L probably damaging Het
Zfp935 T A 13: 62,454,417 H323L probably damaging Het
Other mutations in Trav21-dv12
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00980:Trav21-dv12 APN 14 53876650 missense probably benign 0.36
IGL01599:Trav21-dv12 APN 14 53876731 missense probably damaging 1.00
IGL02185:Trav21-dv12 APN 14 53876498 missense probably benign 0.00
IGL03342:Trav21-dv12 APN 14 53876044 missense unknown
R6460:Trav21-dv12 UTSW 14 53876734 missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- AGGGTCCAAAGCTTGACTGTTG -3'
(R):5'- TGAAATGGATGCCTCTGCTTC -3'

Sequencing Primer
(F):5'- CCAAAGCTTGACTGTTGTTTCTTAAC -3'
(R):5'- CCCCATCGGGCAGATTTTG -3'
Posted On2016-02-04