Incidental Mutation 'R4839:Wdr62'
ID 371626
Institutional Source Beutler Lab
Gene Symbol Wdr62
Ensembl Gene ENSMUSG00000037020
Gene Name WD repeat domain 62
Synonyms 2310038K02Rik
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R4839 (G1)
Quality Score 225
Status Not validated
Chromosome 7
Chromosomal Location 29939563-29979844 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 29940890 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Phenylalanine at position 843 (I843F)
Ref Sequence ENSEMBL: ENSMUSP00000116139 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000108190] [ENSMUST00000134570] [ENSMUST00000145027]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000108190
AA Change: I1314F

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000103825
Gene: ENSMUSG00000037020
AA Change: I1314F

DomainStartEndE-ValueType
low complexity region 27 53 N/A INTRINSIC
WD40 101 142 4.24e-3 SMART
WD40 145 186 1.03e-1 SMART
WD40 189 226 7.4e0 SMART
WD40 284 322 3.55e1 SMART
WD40 353 388 1.85e0 SMART
WD40 395 442 2.98e-1 SMART
WD40 482 521 2.77e-1 SMART
WD40 524 566 2.3e0 SMART
WD40 570 610 4.18e-2 SMART
WD40 615 657 1.54e0 SMART
WD40 660 702 8.49e-3 SMART
WD40 705 744 3.61e-6 SMART
low complexity region 763 768 N/A INTRINSIC
low complexity region 797 811 N/A INTRINSIC
low complexity region 980 987 N/A INTRINSIC
low complexity region 1215 1226 N/A INTRINSIC
low complexity region 1302 1313 N/A INTRINSIC
low complexity region 1477 1497 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000132483
Predicted Effect noncoding transcript
Transcript: ENSMUST00000133347
Predicted Effect probably benign
Transcript: ENSMUST00000134570
AA Change: I843F

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000116139
Gene: ENSMUSG00000037020
AA Change: I843F

DomainStartEndE-ValueType
WD40 36 75 2.77e-1 SMART
WD40 78 120 2.3e0 SMART
WD40 124 164 4.18e-2 SMART
WD40 169 211 1.54e0 SMART
WD40 214 256 8.49e-3 SMART
WD40 259 298 3.61e-6 SMART
low complexity region 317 322 N/A INTRINSIC
low complexity region 351 365 N/A INTRINSIC
low complexity region 512 519 N/A INTRINSIC
low complexity region 744 755 N/A INTRINSIC
low complexity region 831 842 N/A INTRINSIC
low complexity region 1006 1026 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000145027
SMART Domains Protein: ENSMUSP00000116772
Gene: ENSMUSG00000037020

DomainStartEndE-ValueType
low complexity region 27 53 N/A INTRINSIC
WD40 101 142 4.24e-3 SMART
WD40 145 186 1.03e-1 SMART
WD40 189 226 7.4e0 SMART
WD40 284 322 3.55e1 SMART
WD40 353 388 1.85e0 SMART
WD40 395 442 2.98e-1 SMART
WD40 482 521 2.77e-1 SMART
WD40 524 566 2.3e0 SMART
WD40 570 610 4.18e-2 SMART
WD40 615 657 1.54e0 SMART
WD40 660 702 8.49e-3 SMART
WD40 705 744 3.61e-6 SMART
low complexity region 763 768 N/A INTRINSIC
low complexity region 797 811 N/A INTRINSIC
low complexity region 980 987 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000152543
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.8%
  • 20x: 93.8%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is proposed to play a role in cerebral cortical development. Mutations in this gene have been associated with microencephaly, cortical malformations, and mental retardation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2011]
PHENOTYPE: Mice for a hypomorphic allele exhibit reduced brain size due to decreased neural progenitor cells. Cells show spindle instability, spindle assembly checkpoint activation, mitotic arrest and cell death. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 92 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700010I14Rik T A 17: 9,226,845 (GRCm39) S467T probably benign Het
2310030G06Rik A T 9: 50,652,023 (GRCm39) Y68* probably null Het
Abat T G 16: 8,401,512 (GRCm39) probably benign Het
Abca2 C T 2: 25,330,921 (GRCm39) S1203F probably damaging Het
Adam22 G A 5: 8,186,813 (GRCm39) P436L probably damaging Het
Ak3 A C 19: 29,025,132 (GRCm39) L33R probably damaging Het
Arhgap11a A T 2: 113,672,374 (GRCm39) I198K probably damaging Het
Arl14epl A T 18: 47,065,544 (GRCm39) K103M possibly damaging Het
Atg16l1 T A 1: 87,693,896 (GRCm39) N65K probably damaging Het
Btnl2 G A 17: 34,584,260 (GRCm39) W394* probably null Het
Cacna1e C A 1: 154,296,804 (GRCm39) R1687L probably damaging Het
Cacna1g G T 11: 94,350,433 (GRCm39) R471S probably benign Het
Cdh13 A T 8: 119,578,587 (GRCm39) R205* probably null Het
Cdkl3 A T 11: 51,895,861 (GRCm39) Y36F probably damaging Het
Cep290 T A 10: 100,344,648 (GRCm39) N488K probably damaging Het
Cep350 A T 1: 155,804,240 (GRCm39) C948S probably benign Het
Cep70 A G 9: 99,178,138 (GRCm39) K446R probably benign Het
Cfap70 T C 14: 20,475,597 (GRCm39) T375A probably damaging Het
Cfhr1 A G 1: 139,487,871 (GRCm39) L9S probably damaging Het
Chrm4 T A 2: 91,757,952 (GRCm39) M120K probably damaging Het
Col1a1 A G 11: 94,840,921 (GRCm39) probably null Het
Col3a1 T C 1: 45,362,963 (GRCm39) probably null Het
Csrnp3 A T 2: 65,852,375 (GRCm39) R256* probably null Het
Dbf4 T A 5: 8,458,263 (GRCm39) K190* probably null Het
Dnah10 A T 5: 124,850,196 (GRCm39) I1573F probably damaging Het
Dock8 A G 19: 25,146,858 (GRCm39) I1446V probably benign Het
Dst G T 1: 34,229,943 (GRCm39) R2187M probably damaging Het
Ece2 C T 16: 20,449,918 (GRCm39) R257C probably damaging Het
Espn A G 4: 152,222,961 (GRCm39) Y306H probably damaging Het
Fkbpl G A 17: 34,864,839 (GRCm39) M202I probably benign Het
Fn1 A G 1: 71,681,242 (GRCm39) L362P probably damaging Het
Ganc A C 2: 120,290,304 (GRCm39) R880S probably benign Het
Gucy1b2 A T 14: 62,685,695 (GRCm39) L90Q probably damaging Het
Hcn1 T A 13: 118,062,246 (GRCm39) I504N unknown Het
Hdac2 C A 10: 36,873,462 (GRCm39) T352K probably benign Het
Hip1 T C 5: 135,455,172 (GRCm39) probably null Het
Hspa13 G A 16: 75,562,169 (GRCm39) S10L probably damaging Het
Ipo5 T C 14: 121,157,450 (GRCm39) I96T probably benign Het
Isl1 T C 13: 116,438,220 (GRCm39) Y264C probably damaging Het
Izumo1 T C 7: 45,275,657 (GRCm39) I322T probably benign Het
Kars1 A C 8: 112,729,158 (GRCm39) V183G possibly damaging Het
Lrrc15 C A 16: 30,093,086 (GRCm39) M84I probably benign Het
Magi1 A T 6: 93,671,177 (GRCm39) V796E probably damaging Het
Matn4 G T 2: 164,242,896 (GRCm39) D67E probably benign Het
Mertk A G 2: 128,624,496 (GRCm39) M636V probably damaging Het
Mettl27 C A 5: 134,963,266 (GRCm39) P126T probably damaging Het
Mfrp T A 9: 44,013,432 (GRCm39) H52Q possibly damaging Het
Mrgprb8 T G 7: 48,038,656 (GRCm39) I109R probably benign Het
Mroh2a G A 1: 88,165,666 (GRCm39) G512S probably damaging Het
Ncoa7 T A 10: 30,598,655 (GRCm39) R89S possibly damaging Het
Nfkb2 G T 19: 46,296,006 (GRCm39) E170D probably benign Het
Nin G T 12: 70,137,325 (GRCm39) H84N possibly damaging Het
Nwd2 A T 5: 63,962,893 (GRCm39) I826F possibly damaging Het
Or10d1 A G 9: 39,484,441 (GRCm39) M38T probably benign Het
Or14c43 T C 7: 86,115,117 (GRCm39) F166S probably damaging Het
Or1j11 G A 2: 36,312,012 (GRCm39) V201I probably benign Het
Or4l15 C T 14: 50,197,646 (GRCm39) M294I probably benign Het
Or52a5b T C 7: 103,416,961 (GRCm39) I214M possibly damaging Het
Or5k3 A G 16: 58,969,393 (GRCm39) Y60C probably damaging Het
Or5p73 T C 7: 108,064,938 (GRCm39) S136P probably benign Het
Otof C T 5: 30,576,748 (GRCm39) R168H probably damaging Het
Pcdha6 T C 18: 37,101,485 (GRCm39) V226A possibly damaging Het
Pggt1b T C 18: 46,391,166 (GRCm39) I200V possibly damaging Het
Ppat G A 5: 77,098,811 (GRCm39) Q41* probably null Het
Ppfibp2 A T 7: 107,342,192 (GRCm39) H27L probably damaging Het
Rbm27 T A 18: 42,460,510 (GRCm39) I775N probably damaging Het
Rnf40 C T 7: 127,191,812 (GRCm39) R349* probably null Het
Rtp3 A T 9: 110,818,544 (GRCm39) W46R probably damaging Het
Sass6 C T 3: 116,403,949 (GRCm39) R196W probably damaging Het
Sel1l A T 12: 91,799,932 (GRCm39) D131E probably benign Het
Slain2 T C 5: 73,106,066 (GRCm39) S234P probably damaging Het
Slc47a1 C T 11: 61,264,176 (GRCm39) probably null Het
Sp140 CAGAAGAAG CAGAAG 1: 85,538,529 (GRCm39) probably benign Het
Spata31e2 T C 1: 26,724,440 (GRCm39) T247A probably benign Het
Spef2 A T 15: 9,713,264 (GRCm39) Y369* probably null Het
Spred2 T A 11: 19,948,233 (GRCm39) M76K possibly damaging Het
Svs5 T A 2: 164,078,806 (GRCm39) D367V probably benign Het
Tasor2 G A 13: 3,634,807 (GRCm39) P667S probably damaging Het
Tefm A T 11: 80,027,947 (GRCm39) D270E probably benign Het
Tfcp2l1 C A 1: 118,597,194 (GRCm39) P425H probably benign Het
Thbd A T 2: 148,248,591 (GRCm39) C426S probably damaging Het
Timm10b T A 7: 105,333,219 (GRCm39) D968E probably damaging Het
Tle2 C T 10: 81,413,518 (GRCm39) T119I probably damaging Het
Tnik T A 3: 28,650,224 (GRCm39) Y446N possibly damaging Het
Tpr T A 1: 150,324,948 (GRCm39) L2400* probably null Het
Trrap T C 5: 144,782,402 (GRCm39) F3328S probably damaging Het
Vldlr G A 19: 27,215,465 (GRCm39) C154Y probably damaging Het
Vmn1r79 T G 7: 11,910,361 (GRCm39) M81R probably benign Het
Vps13d T C 4: 144,812,000 (GRCm39) T3305A possibly damaging Het
Zfp747l1 T C 7: 126,984,179 (GRCm39) S308G probably benign Het
Zfp873 T A 10: 81,896,353 (GRCm39) H361Q probably damaging Het
Zfp949 A C 9: 88,452,047 (GRCm39) H539P probably damaging Het
Other mutations in Wdr62
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00094:Wdr62 APN 7 29,942,948 (GRCm39) missense probably benign 0.00
IGL00428:Wdr62 APN 7 29,970,177 (GRCm39) missense probably damaging 0.99
IGL00579:Wdr62 APN 7 29,967,320 (GRCm39) missense probably damaging 1.00
IGL00709:Wdr62 APN 7 29,941,486 (GRCm39) missense probably benign 0.05
IGL00924:Wdr62 APN 7 29,942,231 (GRCm39) missense probably damaging 1.00
IGL00924:Wdr62 APN 7 29,964,643 (GRCm39) missense probably damaging 0.99
IGL00956:Wdr62 APN 7 29,960,764 (GRCm39) missense probably damaging 0.96
IGL01016:Wdr62 APN 7 29,953,676 (GRCm39) missense probably benign 0.39
IGL01118:Wdr62 APN 7 29,942,206 (GRCm39) missense probably damaging 0.96
IGL01458:Wdr62 APN 7 29,941,187 (GRCm39) missense probably benign 0.08
IGL01977:Wdr62 APN 7 29,957,526 (GRCm39) missense probably damaging 1.00
IGL02065:Wdr62 APN 7 29,942,894 (GRCm39) missense possibly damaging 0.59
IGL02155:Wdr62 APN 7 29,962,068 (GRCm39) missense probably damaging 1.00
IGL02260:Wdr62 APN 7 29,970,207 (GRCm39) missense probably damaging 1.00
IGL02404:Wdr62 APN 7 29,967,298 (GRCm39) missense probably damaging 1.00
IGL02491:Wdr62 APN 7 29,942,184 (GRCm39) missense probably benign 0.19
IGL02556:Wdr62 APN 7 29,944,709 (GRCm39) splice site probably null
IGL02739:Wdr62 APN 7 29,941,885 (GRCm39) nonsense probably null
IGL03387:Wdr62 APN 7 29,970,199 (GRCm39) missense possibly damaging 0.90
ivoire UTSW 7 29,971,045 (GRCm39) missense probably damaging 1.00
I0000:Wdr62 UTSW 7 29,944,752 (GRCm39) missense probably benign 0.03
R0304:Wdr62 UTSW 7 29,942,299 (GRCm39) missense probably benign 0.20
R0371:Wdr62 UTSW 7 29,941,583 (GRCm39) missense possibly damaging 0.56
R0400:Wdr62 UTSW 7 29,940,887 (GRCm39) missense possibly damaging 0.81
R0621:Wdr62 UTSW 7 29,953,486 (GRCm39) missense possibly damaging 0.94
R0634:Wdr62 UTSW 7 29,969,599 (GRCm39) missense probably damaging 0.98
R1758:Wdr62 UTSW 7 29,967,328 (GRCm39) missense probably damaging 1.00
R2205:Wdr62 UTSW 7 29,957,574 (GRCm39) critical splice acceptor site probably null
R2254:Wdr62 UTSW 7 29,967,328 (GRCm39) missense probably damaging 0.97
R2255:Wdr62 UTSW 7 29,967,328 (GRCm39) missense probably damaging 0.97
R2566:Wdr62 UTSW 7 29,973,424 (GRCm39) missense probably damaging 1.00
R2851:Wdr62 UTSW 7 29,960,862 (GRCm39) missense possibly damaging 0.70
R3150:Wdr62 UTSW 7 29,971,095 (GRCm39) missense possibly damaging 0.94
R4355:Wdr62 UTSW 7 29,941,673 (GRCm39) missense probably damaging 1.00
R4517:Wdr62 UTSW 7 29,969,683 (GRCm39) missense probably damaging 1.00
R4839:Wdr62 UTSW 7 29,970,111 (GRCm39) missense probably damaging 1.00
R5193:Wdr62 UTSW 7 29,964,592 (GRCm39) missense probably damaging 0.99
R5289:Wdr62 UTSW 7 29,967,300 (GRCm39) missense probably damaging 1.00
R5306:Wdr62 UTSW 7 29,964,688 (GRCm39) missense possibly damaging 0.94
R5878:Wdr62 UTSW 7 29,940,772 (GRCm39) missense probably benign
R5942:Wdr62 UTSW 7 29,942,504 (GRCm39) nonsense probably null
R6051:Wdr62 UTSW 7 29,960,809 (GRCm39) missense possibly damaging 0.69
R6237:Wdr62 UTSW 7 29,941,860 (GRCm39) missense probably damaging 1.00
R6727:Wdr62 UTSW 7 29,971,045 (GRCm39) missense probably damaging 1.00
R7158:Wdr62 UTSW 7 29,970,163 (GRCm39) missense possibly damaging 0.77
R7208:Wdr62 UTSW 7 29,951,761 (GRCm39) missense probably damaging 0.97
R7237:Wdr62 UTSW 7 29,969,869 (GRCm39) splice site probably null
R7336:Wdr62 UTSW 7 29,943,342 (GRCm39) missense probably damaging 0.98
R7559:Wdr62 UTSW 7 29,970,198 (GRCm39) missense probably damaging 0.98
R7845:Wdr62 UTSW 7 29,964,667 (GRCm39) missense possibly damaging 0.79
R7936:Wdr62 UTSW 7 29,964,584 (GRCm39) missense probably damaging 1.00
R8002:Wdr62 UTSW 7 29,951,785 (GRCm39) missense probably damaging 1.00
R8347:Wdr62 UTSW 7 29,962,128 (GRCm39) missense possibly damaging 0.88
R8399:Wdr62 UTSW 7 29,957,486 (GRCm39) missense probably damaging 1.00
R8954:Wdr62 UTSW 7 29,953,454 (GRCm39) missense probably damaging 1.00
R9044:Wdr62 UTSW 7 29,962,062 (GRCm39) missense probably benign
R9166:Wdr62 UTSW 7 29,941,874 (GRCm39) missense probably damaging 1.00
R9212:Wdr62 UTSW 7 29,942,563 (GRCm39) missense probably damaging 1.00
R9748:Wdr62 UTSW 7 29,953,466 (GRCm39) missense possibly damaging 0.80
Z1176:Wdr62 UTSW 7 29,955,353 (GRCm39) missense probably benign 0.00
Z1186:Wdr62 UTSW 7 29,950,184 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- ACCTGGTCTCTAGAAGTTGGAG -3'
(R):5'- TCTCTCTTGGGGACAGTGAG -3'

Sequencing Primer
(F):5'- CTCTAGAAGTTGGAGGTGGGCAG -3'
(R):5'- TGTGACAGCTGAGCTACCC -3'
Posted On 2016-03-01