Mutagenetix > Incidental Mutation

Incidental Mutation 'R4858:Dpysl3'

372279

Institutional Source

Beutler Lab

Gene Symbol

Dpysl3

Ensembl Gene

ENSMUSG00000024501

Gene Name

dihydropyrimidinase-like 3

Synonyms

CRMP4, Ulip, 9430041P20Rik, CRMP-4, TUC4, Ulip1

MMRRC Submission

042469-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.581) question?

Stock #

R4858 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

43454049-43571351 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 43467079 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Valine at position 279 (I279V)

Ref Sequence

ENSEMBL: ENSMUSP00000025379 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025379] [ENSMUST00000118043] [ENSMUST00000118071] [ENSMUST00000121805] [ENSMUST00000124207]

AlphaFold

Q62188

Predicted Effect

probably damaging
Transcript: ENSMUST00000025379
AA Change: I279V

PolyPhen 2 Score 0.959 (Sensitivity: 0.78; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000025379
Gene: ENSMUSG00000024501
AA Change: I279V

Domain	Start	End	E-Value	Type
Pfam:Amidohydro_5	35	104	8e-13	PFAM
Pfam:Amidohydro_4	59	410	3.4e-14	PFAM
Pfam:Amidohydro_1	64	413	7.3e-37	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000118043
AA Change: I277V

PolyPhen 2 Score 0.037 (Sensitivity: 0.94; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000113711
Gene: ENSMUSG00000024501
AA Change: I277V

Domain	Start	End	E-Value	Type
Pfam:Amidohydro_5	33	102	2e-13	PFAM
Pfam:Amidohydro_4	57	408	8.8e-15	PFAM
Pfam:Amidohydro_1	62	411	2.5e-36	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000118071
AA Change: I68V

PolyPhen 2 Score 0.953 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000113604
Gene: ENSMUSG00000024501
AA Change: I68V

Domain	Start	End	E-Value	Type
PDB:4BKN\|B	1	91	2e-58	PDB
SCOP:d1gkra2	1	96	3e-24	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000121805
AA Change: I392V

PolyPhen 2 Score 0.941 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000112928
Gene: ENSMUSG00000024501
AA Change: I392V

Domain	Start	End	E-Value	Type
low complexity region	85	102	N/A	INTRINSIC
Pfam:Amidohydro_1	177	566	1.4e-41	PFAM
Pfam:Amidohydro_3	481	566	1.2e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000124207
AA Change: I68V

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000114981
Gene: ENSMUSG00000024501
AA Change: I68V

Domain	Start	End	E-Value	Type
Pfam:Amidohydro_1	6	202	1e-23	PFAM
Pfam:Amidohydro_4	16	199	1.2e-8	PFAM

Meta Mutation Damage Score

0.1041

Coding Region Coverage

1x: 99.0%
3x: 98.2%
10x: 96.0%
20x: 91.5%

Validation Efficiency

94% (103/109)

MGI Phenotype

FUNCTION: This gene encodes a protein that belongs to the TUC (TOAD-64/Ulip/CRMP) family of proteins. Members of this family are phosphoproteins that function in axonal guidance and neuronal differentiation during development and regeneration of the nervous system. A mutation in the human gene is associated with amyotrophic lateral sclerosis. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Apr 2014]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit impaired axon extension, abnormal neuron growth cones morphology and impaired anterograde transportation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 80 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgb	T	C	10: 10,225,321 (GRCm39)	Y1415C	probably damaging	Het
Adgrf1	T	C	17: 43,614,563 (GRCm39)	S216P	probably damaging	Het
Ankrd12	T	C	17: 66,338,428 (GRCm39)	D197G	probably damaging	Het
Aoc3	C	A	11: 101,222,488 (GRCm39)	H198Q	probably damaging	Het
Aox1	C	A	1: 58,143,640 (GRCm39)	H1253N	probably benign	Het
Arg1	T	A	10: 24,798,536 (GRCm39)	E38V	possibly damaging	Het
Baz2b	T	A	2: 59,738,087 (GRCm39)	M1741L	probably benign	Het
Bend4	T	C	5: 67,574,915 (GRCm39)	E322G	probably damaging	Het
Brpf1	T	C	6: 113,294,639 (GRCm39)	V661A	possibly damaging	Het
C2cd3	A	T	7: 100,104,160 (GRCm39)	T2058S	probably damaging	Het
Camk4	T	C	18: 33,309,266 (GRCm39)	V223A	probably damaging	Het
Casp1	C	T	9: 5,306,742 (GRCm39)	R395C	probably damaging	Het
Ccdc180	T	G	4: 45,923,244 (GRCm39)	I1066S	probably damaging	Het
Ccne1	A	G	7: 37,798,744 (GRCm39)	F292L	probably damaging	Het
Ccz1	A	T	5: 143,949,628 (GRCm39)	M100K	probably damaging	Het
Cep128	T	C	12: 91,226,936 (GRCm39)	T678A	probably benign	Het
Cep290	G	A	10: 100,330,773 (GRCm39)	R151Q	probably benign	Het
Crip3	A	G	17: 46,741,673 (GRCm39)		probably benign	Het
Ddx60	A	G	8: 62,474,348 (GRCm39)	M1479V	possibly damaging	Het
Defb40	T	A	8: 19,025,093 (GRCm39)	I38F	probably benign	Het
Dnajb2	C	T	1: 75,220,198 (GRCm39)	T221I	possibly damaging	Het
Echs1	G	A	7: 139,692,499 (GRCm39)		probably benign	Het
Efl1	T	A	7: 82,320,835 (GRCm39)	N89K	probably damaging	Het
Extl3	T	C	14: 65,313,443 (GRCm39)	T580A	probably benign	Het
Fam171a2	C	T	11: 102,330,982 (GRCm39)	G193E	probably damaging	Het
Fam234a	A	T	17: 26,435,591 (GRCm39)	D264E	probably benign	Het
Fbxw20	A	T	9: 109,063,763 (GRCm39)	V3D	possibly damaging	Het
Fig4	G	A	10: 41,109,586 (GRCm39)	P637L	probably benign	Het
Fnbp1l	G	A	3: 122,339,964 (GRCm39)	T496I	probably benign	Het
Fry	T	C	5: 150,325,108 (GRCm39)	V1175A	possibly damaging	Het
Gm5617	C	T	9: 48,406,968 (GRCm39)	A34V	possibly damaging	Het
Gnai1	A	T	5: 18,496,596 (GRCm39)	V109E	probably benign	Het
H2-K2	A	T	17: 34,216,298 (GRCm39)	Y283N	probably benign	Het
Hectd2	A	T	19: 36,582,682 (GRCm39)	I471F	probably damaging	Het
Hsdl2	T	C	4: 59,612,812 (GRCm39)		probably null	Het
Igkv3-1	T	C	6: 70,681,028 (GRCm39)	S76P	probably damaging	Het
Krt15	A	T	11: 100,022,897 (GRCm39)	S439R	probably benign	Het
Lama2	TTTGCGCATT	TTT	10: 26,919,639 (GRCm39)		probably null	Het
Lima1	G	A	15: 99,717,457 (GRCm39)	T23I	probably benign	Het
Map4k1	C	A	7: 28,688,195 (GRCm39)	H248Q	probably damaging	Het
Mcf2l	C	A	8: 13,063,972 (GRCm39)	T1004K	probably damaging	Het
Meak7	T	G	8: 120,499,262 (GRCm39)	T77P	probably benign	Het
Micall1	T	A	15: 79,007,146 (GRCm39)		probably benign	Het
Ms4a14	A	G	19: 11,278,976 (GRCm39)	I1194T	probably benign	Het
Mtor	T	C	4: 148,539,273 (GRCm39)	*257Q	probably null	Het
Mucl3	G	A	17: 35,948,468 (GRCm39)	T377I	possibly damaging	Het
Ncan	T	A	8: 70,556,705 (GRCm39)	T961S	probably benign	Het
Odad4	A	G	11: 100,441,147 (GRCm39)	N126S	probably damaging	Het
Or10z1	A	T	1: 174,078,262 (GRCm39)	I77N	probably damaging	Het
Or1e29	T	A	11: 73,667,372 (GRCm39)	L260F	probably benign	Het
Or1f19	T	C	16: 3,410,706 (GRCm39)	S149P	probably damaging	Het
Or2t49	T	A	11: 58,392,735 (GRCm39)	I216F	probably damaging	Het
Or8h10	T	G	2: 86,808,693 (GRCm39)	Y149S	probably damaging	Het
Or9e1	T	A	11: 58,732,033 (GRCm39)	L31H	possibly damaging	Het
Pcdhgb2	A	G	18: 37,825,153 (GRCm39)	R715G	probably benign	Het
Pik3c3	T	C	18: 30,477,131 (GRCm39)		probably null	Het
Pkhd1l1	A	T	15: 44,354,497 (GRCm39)	D296V	probably damaging	Het
Plekhh2	A	G	17: 84,908,125 (GRCm39)	I1189V	probably damaging	Het
Psg18	A	T	7: 18,087,409 (GRCm39)	L83Q	possibly damaging	Het
Rps6kc1	A	G	1: 190,532,515 (GRCm39)	W496R	probably damaging	Het
Setd5	C	T	6: 113,126,527 (GRCm39)	T1188I	probably damaging	Het
Slc4a3	T	C	1: 75,531,729 (GRCm39)	F899L	probably damaging	Het
Slitrk6	T	C	14: 110,989,315 (GRCm39)	T131A	probably damaging	Het
Speg	G	T	1: 75,398,379 (GRCm39)	R1942L	probably damaging	Het
Sulf2	C	A	2: 165,923,524 (GRCm39)	R565L	probably benign	Het
Tcerg1	T	C	18: 42,657,046 (GRCm39)	M176T	unknown	Het
Tfcp2l1	T	C	1: 118,597,239 (GRCm39)	I440T	possibly damaging	Het
Tgm7	A	T	2: 120,929,445 (GRCm39)		probably null	Het
Tjp2	C	A	19: 24,099,484 (GRCm39)	G433V	probably damaging	Het
Tmc7	C	T	7: 118,142,565 (GRCm39)	G608R	probably damaging	Het
Tmed4	A	G	11: 6,224,456 (GRCm39)	F68S	possibly damaging	Het
Tmem30b	G	A	12: 73,592,686 (GRCm39)	P143L	probably damaging	Het
Tnfrsf23	C	T	7: 143,235,217 (GRCm39)	C49Y	probably damaging	Het
Tnni3k	A	T	3: 154,492,445 (GRCm39)		probably null	Het
Trav12-2	G	T	14: 53,854,150 (GRCm39)	M41I	probably benign	Het
Trim6	T	A	7: 103,881,692 (GRCm39)	Y314*	probably null	Het
Utp25	A	G	1: 192,796,072 (GRCm39)	Y686H	probably damaging	Het
Vmn2r118	A	G	17: 55,899,894 (GRCm39)	V670A	probably damaging	Het
Zfp438	A	T	18: 5,213,154 (GRCm39)	D601E	probably benign	Het
Zfp606	T	A	7: 12,226,983 (GRCm39)	I310N	possibly damaging	Het

Other mutations in Dpysl3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02151:Dpysl3	APN	18	43,491,365 (GRCm39)	missense	probably damaging	1.00
IGL02533:Dpysl3	APN	18	43,458,859 (GRCm39)	missense	probably benign	0.00
IGL02632:Dpysl3	APN	18	43,526,090 (GRCm39)	missense	possibly damaging	0.50
IGL03111:Dpysl3	APN	18	43,462,910 (GRCm39)	missense	probably damaging	1.00
IGL03138:Dpysl3	UTSW	18	43,458,859 (GRCm39)	missense	probably benign	0.00
R0001:Dpysl3	UTSW	18	43,491,440 (GRCm39)	missense	possibly damaging	0.93
R0062:Dpysl3	UTSW	18	43,466,941 (GRCm39)	splice site	probably null
R0062:Dpysl3	UTSW	18	43,466,941 (GRCm39)	splice site	probably null
R0656:Dpysl3	UTSW	18	43,571,136 (GRCm39)	missense	possibly damaging	0.65
R1522:Dpysl3	UTSW	18	43,496,622 (GRCm39)	missense	probably damaging	1.00
R1694:Dpysl3	UTSW	18	43,461,439 (GRCm39)	missense	possibly damaging	0.94
R1764:Dpysl3	UTSW	18	43,496,583 (GRCm39)	missense	probably damaging	1.00
R1822:Dpysl3	UTSW	18	43,475,393 (GRCm39)	missense	probably benign	0.07
R1880:Dpysl3	UTSW	18	43,462,939 (GRCm39)	splice site	probably null
R1907:Dpysl3	UTSW	18	43,571,193 (GRCm39)	missense	probably damaging	1.00
R1925:Dpysl3	UTSW	18	43,465,996 (GRCm39)	missense	probably damaging	1.00
R2248:Dpysl3	UTSW	18	43,491,358 (GRCm39)	missense	possibly damaging	0.56
R3434:Dpysl3	UTSW	18	43,494,126 (GRCm39)	missense	probably benign	0.01
R4575:Dpysl3	UTSW	18	43,475,312 (GRCm39)	missense	probably damaging	1.00
R4778:Dpysl3	UTSW	18	43,487,867 (GRCm39)	missense	probably benign	0.06
R4780:Dpysl3	UTSW	18	43,487,867 (GRCm39)	missense	probably benign	0.06
R4987:Dpysl3	UTSW	18	43,461,492 (GRCm39)	missense	probably benign	0.00
R5151:Dpysl3	UTSW	18	43,571,145 (GRCm39)	missense	probably benign	0.00
R5152:Dpysl3	UTSW	18	43,571,145 (GRCm39)	missense	probably benign	0.00
R5229:Dpysl3	UTSW	18	43,466,016 (GRCm39)	missense	probably damaging	1.00
R5373:Dpysl3	UTSW	18	43,494,101 (GRCm39)	missense	probably damaging	1.00
R5374:Dpysl3	UTSW	18	43,494,101 (GRCm39)	missense	probably damaging	1.00
R5383:Dpysl3	UTSW	18	43,571,103 (GRCm39)	missense	probably damaging	1.00
R6014:Dpysl3	UTSW	18	43,494,132 (GRCm39)	missense	probably damaging	1.00
R6837:Dpysl3	UTSW	18	43,570,947 (GRCm39)	missense	probably benign	0.01
R6958:Dpysl3	UTSW	18	43,571,067 (GRCm39)	missense	probably benign
R6991:Dpysl3	UTSW	18	43,486,956 (GRCm39)	missense	probably damaging	1.00
R7087:Dpysl3	UTSW	18	43,496,595 (GRCm39)	missense	probably damaging	1.00
R7196:Dpysl3	UTSW	18	43,462,910 (GRCm39)	missense	probably damaging	1.00
R7223:Dpysl3	UTSW	18	43,571,107 (GRCm39)	missense	probably benign	0.20
R8731:Dpysl3	UTSW	18	43,571,157 (GRCm39)	missense	probably damaging	1.00
R9051:Dpysl3	UTSW	18	43,462,814 (GRCm39)	missense	probably damaging	1.00
R9240:Dpysl3	UTSW	18	43,487,867 (GRCm39)	missense	probably benign	0.06
R9682:Dpysl3	UTSW	18	43,491,313 (GRCm39)	missense	probably damaging	1.00
R9695:Dpysl3	UTSW	18	43,571,192 (GRCm39)	missense	probably damaging	0.96
R9786:Dpysl3	UTSW	18	43,462,922 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGATCCCACAGAATACATGGC -3'
(R):5'- TGTGAGGCTTACAGTCAGAGC -3'

Sequencing Primer
(F):5'- GATCCCACAGAATACATGGCATTCC -3'
(R):5'- GAGGCTTACAGTCAGAGCTTATAAC -3'

Posted On

2016-03-01