Mutagenetix > Incidental Mutation

Incidental Mutation 'R4866:Cyp2c39'

374956

Institutional Source

Beutler Lab

Gene Symbol

Cyp2c39

Ensembl Gene

ENSMUSG00000025003

Gene Name

cytochrome P450, family 2, subfamily c, polypeptide 39

Synonyms

MMRRC Submission

042476-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.100) question?

Stock #

R4866 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

39499306-39556973 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 39502020 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Isoleucine at position 136 (M136I)

Ref Sequence

ENSEMBL: ENSMUSP00000025968 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025968]

AlphaFold

P56656

Predicted Effect

probably benign
Transcript: ENSMUST00000025968
AA Change: M136I

PolyPhen 2 Score 0.433 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000025968
Gene: ENSMUSG00000025003
AA Change: M136I

Domain	Start	End	E-Value	Type
low complexity region	3	19	N/A	INTRINSIC
Pfam:p450	30	487	1.1e-163	PFAM

Meta Mutation Damage Score

0.5654

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 96.9%
20x: 94.0%

Validation Efficiency

99% (79/80)

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca3	C	T	17: 24,593,274 (GRCm39)	R224C	probably damaging	Het
Abcc5	A	T	16: 20,241,182 (GRCm39)	M1K	probably null	Het
Ablim2	C	T	5: 35,959,766 (GRCm39)	R73C	possibly damaging	Het
Adam5	A	C	8: 25,232,172 (GRCm39)		probably null	Het
Adam5	G	A	8: 25,271,619 (GRCm39)	T596I	probably damaging	Het
Apoa2	T	C	1: 171,053,369 (GRCm39)		probably null	Het
Atad1	A	T	19: 32,679,964 (GRCm39)	H79Q	probably benign	Het
Atp8a2	T	C	14: 59,928,916 (GRCm39)	D1046G	probably damaging	Het
Bcam	A	G	7: 19,499,397 (GRCm39)	Y209H	probably benign	Het
Brpf1	G	A	6: 113,299,431 (GRCm39)	V1120I	probably damaging	Het
Catsperb	G	A	12: 101,474,208 (GRCm39)	C302Y	probably damaging	Het
Cbl	A	G	9: 44,064,166 (GRCm39)	V790A	probably benign	Het
Ccdc60	T	C	5: 116,310,549 (GRCm39)	D171G	probably damaging	Het
Cd300c2	A	T	11: 114,891,807 (GRCm39)	C22*	probably null	Het
Cdan1	C	A	2: 120,561,928 (GRCm39)		probably benign	Het
Cdk5rap1	C	T	2: 154,212,876 (GRCm39)		probably null	Het
Cfap410	T	A	10: 77,817,413 (GRCm39)		probably null	Het
Cfap65	T	C	1: 74,964,716 (GRCm39)	D479G	probably damaging	Het
Cmbl	A	G	15: 31,585,490 (GRCm39)	K113E	probably benign	Het
Cog6	G	A	3: 52,918,019 (GRCm39)	T173I	probably benign	Het
Cts6	T	A	13: 61,350,090 (GRCm39)		probably null	Het
Cyp11a1	G	A	9: 57,933,380 (GRCm39)	V413M	probably damaging	Het
Dclre1b	A	T	3: 103,715,412 (GRCm39)	Y29N	probably damaging	Het
Depdc1a	T	A	3: 159,221,764 (GRCm39)	I236K	probably damaging	Het
Dhx36	A	T	3: 62,380,198 (GRCm39)	Y833N	probably damaging	Het
Dop1b	G	T	16: 93,560,318 (GRCm39)		probably null	Het
Elovl3	A	G	19: 46,120,603 (GRCm39)	E32G	possibly damaging	Het
Entrep1	A	G	19: 23,952,790 (GRCm39)	S507P	possibly damaging	Het
Epcam	T	C	17: 87,951,049 (GRCm39)	V212A	possibly damaging	Het
Fcrl2	A	T	3: 87,170,773 (GRCm39)	C4S	possibly damaging	Het
Galnt16	T	C	12: 80,630,851 (GRCm39)	Y310H	probably damaging	Het
Gm12789	G	A	4: 101,846,182 (GRCm39)		probably benign	Het
Gspt1	C	T	16: 11,040,529 (GRCm39)	R593H	possibly damaging	Het
Hmcn2	A	T	2: 31,279,403 (GRCm39)	T1802S	possibly damaging	Het
Igha	A	G	12: 113,223,129 (GRCm39)	V166A	probably benign	Het
Itfg2	A	G	6: 128,393,279 (GRCm39)		probably benign	Het
Jund	T	C	8: 71,152,254 (GRCm39)	V183A	probably damaging	Het
Katnb1	T	C	8: 95,824,132 (GRCm39)	S471P	possibly damaging	Het
Kazn	A	G	4: 141,832,216 (GRCm39)	F661S	unknown	Het
Kif19a	G	A	11: 114,658,053 (GRCm39)	M37I	probably benign	Het
Lgr5	C	T	10: 115,288,590 (GRCm39)	V661I	probably benign	Het
Lvrn	G	T	18: 47,026,768 (GRCm39)	A789S	probably damaging	Het
Mapk10	T	C	5: 103,111,391 (GRCm39)	D351G	probably damaging	Het
Mga	T	A	2: 119,794,535 (GRCm39)	C2622S	possibly damaging	Het
Mios	T	G	6: 8,214,857 (GRCm39)	F18V	probably damaging	Het
Mllt6	A	G	11: 97,565,285 (GRCm39)	D575G	probably damaging	Het
Mmp10	G	A	9: 7,508,190 (GRCm39)	V439M	probably damaging	Het
Myh4	A	G	11: 67,139,453 (GRCm39)	D590G	probably benign	Het
Ndufs2	C	T	1: 171,074,618 (GRCm39)	G14R	probably benign	Het
Or10ad1b	T	A	15: 98,125,371 (GRCm39)	I52F	probably damaging	Het
Or51a7	A	T	7: 102,614,927 (GRCm39)	M207L	probably benign	Het
Or56a4	T	C	7: 104,806,514 (GRCm39)	Y125C	possibly damaging	Het
Or8g26	A	G	9: 39,096,367 (GRCm39)	K298E	probably damaging	Het
Plau	G	T	14: 20,887,872 (GRCm39)	V39L	probably benign	Het
Ppp3cb	A	G	14: 20,573,911 (GRCm39)	C275R	probably damaging	Het
Ppp4r4	T	G	12: 103,566,706 (GRCm39)	M51R	possibly damaging	Het
Prr5	A	G	15: 84,626,105 (GRCm39)	Y60C	probably damaging	Het
Ptprt	T	C	2: 161,402,159 (GRCm39)	D1023G	probably damaging	Het
Raly	T	A	2: 154,703,816 (GRCm39)	V129E	probably damaging	Het
Rsph10b	A	G	5: 143,885,347 (GRCm39)	E249G	probably benign	Het
Sart1	A	C	19: 5,432,248 (GRCm39)	L577W	probably damaging	Het
Senp1	T	C	15: 97,964,729 (GRCm39)	E189G	possibly damaging	Het
Slc22a2	G	T	17: 12,803,316 (GRCm39)	C50F	probably damaging	Het
Spem1	A	T	11: 69,711,755 (GRCm39)	V303E	probably damaging	Het
Tgfb3	A	G	12: 86,124,588 (GRCm39)	V40A	possibly damaging	Het
Ttl	T	C	2: 128,923,147 (GRCm39)	S163P	probably damaging	Het
Ttll9	C	A	2: 152,844,920 (GRCm39)	N429K	probably benign	Het
Uggt1	G	A	1: 36,241,936 (GRCm39)	R333*	probably null	Het
Zfhx2	A	G	14: 55,302,993 (GRCm39)	S1664P	possibly damaging	Het
Zfp51	T	A	17: 21,682,012 (GRCm39)	D70E	possibly damaging	Het
Zfp592	T	A	7: 80,691,607 (GRCm39)	V1262E	probably damaging	Het
Zfp595	C	A	13: 67,465,760 (GRCm39)	G168C	probably damaging	Het
Zswim9	A	T	7: 12,995,095 (GRCm39)	S354T	probably damaging	Het

Other mutations in Cyp2c39

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00646:Cyp2c39	APN	19	39,501,935 (GRCm39)	splice site	probably benign
IGL01806:Cyp2c39	APN	19	39,525,264 (GRCm39)	missense	probably damaging	1.00
IGL02158:Cyp2c39	APN	19	39,556,574 (GRCm39)	missense	probably benign
IGL02219:Cyp2c39	APN	19	39,556,643 (GRCm39)	utr 3 prime	probably benign
IGL02483:Cyp2c39	APN	19	39,525,231 (GRCm39)	missense	probably damaging	1.00
IGL02490:Cyp2c39	APN	19	39,527,446 (GRCm39)	missense	probably damaging	1.00
IGL02597:Cyp2c39	APN	19	39,549,331 (GRCm39)	nonsense	probably null
IGL03089:Cyp2c39	APN	19	39,552,295 (GRCm39)	missense	probably benign	0.00
IGL03197:Cyp2c39	APN	19	39,555,361 (GRCm39)	missense	probably damaging	1.00
IGL03392:Cyp2c39	APN	19	39,501,767 (GRCm39)	missense	probably benign	0.40
G1citation:Cyp2c39	UTSW	19	39,525,261 (GRCm39)	missense	probably damaging	0.98
R0086:Cyp2c39	UTSW	19	39,499,357 (GRCm39)	missense	unknown
R0369:Cyp2c39	UTSW	19	39,502,079 (GRCm39)	missense	probably damaging	1.00
R0585:Cyp2c39	UTSW	19	39,525,203 (GRCm39)	missense	probably benign	0.43
R0586:Cyp2c39	UTSW	19	39,501,934 (GRCm39)	splice site	probably benign
R0906:Cyp2c39	UTSW	19	39,499,315 (GRCm39)	start codon destroyed	probably null
R1613:Cyp2c39	UTSW	19	39,527,455 (GRCm39)	missense	probably damaging	0.99
R1711:Cyp2c39	UTSW	19	39,555,335 (GRCm39)	missense	probably damaging	1.00
R1780:Cyp2c39	UTSW	19	39,527,295 (GRCm39)	splice site	probably benign
R2208:Cyp2c39	UTSW	19	39,549,405 (GRCm39)	missense	possibly damaging	0.56
R2327:Cyp2c39	UTSW	19	39,527,397 (GRCm39)	missense	probably benign	0.07
R3431:Cyp2c39	UTSW	19	39,525,306 (GRCm39)	missense	probably damaging	0.99
R4847:Cyp2c39	UTSW	19	39,549,340 (GRCm39)	missense	probably damaging	1.00
R4900:Cyp2c39	UTSW	19	39,502,020 (GRCm39)	missense	probably benign	0.43
R4974:Cyp2c39	UTSW	19	39,552,323 (GRCm39)	missense	probably benign	0.25
R5159:Cyp2c39	UTSW	19	39,549,378 (GRCm39)	missense	possibly damaging	0.96
R5470:Cyp2c39	UTSW	19	39,501,974 (GRCm39)	missense	possibly damaging	0.54
R5860:Cyp2c39	UTSW	19	39,525,270 (GRCm39)	missense	probably damaging	1.00
R6013:Cyp2c39	UTSW	19	39,501,969 (GRCm39)	missense	probably benign	0.03
R6018:Cyp2c39	UTSW	19	39,499,436 (GRCm39)	missense	probably damaging	1.00
R6230:Cyp2c39	UTSW	19	39,525,246 (GRCm39)	missense	probably damaging	1.00
R6261:Cyp2c39	UTSW	19	39,556,463 (GRCm39)	missense	probably damaging	1.00
R6345:Cyp2c39	UTSW	19	39,501,616 (GRCm39)	critical splice acceptor site	probably null
R6345:Cyp2c39	UTSW	19	39,501,615 (GRCm39)	critical splice acceptor site	probably null
R6822:Cyp2c39	UTSW	19	39,525,261 (GRCm39)	missense	probably damaging	0.98
R6925:Cyp2c39	UTSW	19	39,501,639 (GRCm39)	missense	probably damaging	1.00
R7578:Cyp2c39	UTSW	19	39,499,400 (GRCm39)	missense	probably damaging	1.00
R7871:Cyp2c39	UTSW	19	39,549,405 (GRCm39)	missense	possibly damaging	0.56
R8032:Cyp2c39	UTSW	19	39,499,426 (GRCm39)	missense	probably benign	0.00
R8293:Cyp2c39	UTSW	19	39,552,411 (GRCm39)	missense	probably benign	0.03
R8393:Cyp2c39	UTSW	19	39,525,255 (GRCm39)	missense	possibly damaging	0.87
R8954:Cyp2c39	UTSW	19	39,525,197 (GRCm39)	missense	probably benign	0.04
R8985:Cyp2c39	UTSW	19	39,552,419 (GRCm39)	missense	probably benign	0.34
R9146:Cyp2c39	UTSW	19	39,527,344 (GRCm39)	missense
R9224:Cyp2c39	UTSW	19	39,527,332 (GRCm39)	missense	probably benign	0.17
R9472:Cyp2c39	UTSW	19	39,502,043 (GRCm39)	missense	probably damaging	1.00
R9615:Cyp2c39	UTSW	19	39,501,617 (GRCm39)	missense	probably benign	0.02
R9616:Cyp2c39	UTSW	19	39,501,648 (GRCm39)	missense	probably damaging	1.00
R9717:Cyp2c39	UTSW	19	39,556,493 (GRCm39)	missense	possibly damaging	0.80

Predicted Primers

PCR Primer
(F):5'- GAAAGGGATGGGCTTCCTTC -3'
(R):5'- ACTCATAGTTCTACAACTCAGCAG -3'

Sequencing Primer
(F):5'- CTTCGTAGGTACAGTGGGACCTC -3'
(R):5'- TCAGCAGAAAGTTAACCTGAAGC -3'

Posted On

2016-03-17