Mutagenetix > Incidental Mutation

Incidental Mutation 'R4877:Gstcd'

374972

Institutional Source

Beutler Lab

Gene Symbol

Gstcd

Ensembl Gene

ENSMUSG00000028018

Gene Name

glutathione S-transferase, C-terminal domain containing

Synonyms

4933434L15Rik

MMRRC Submission

042486-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4877 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

132687513-132797794 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to T at 132711314 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000079421 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029651] [ENSMUST00000080583]

AlphaFold

Q5RL51

Predicted Effect

probably benign
Transcript: ENSMUST00000029651

SMART Domains

Protein: ENSMUSP00000029651
Gene: ENSMUSG00000028018

Domain	Start	End	E-Value	Type
low complexity region	52	62	N/A	INTRINSIC
low complexity region	168	181	N/A	INTRINSIC
low complexity region	195	205	N/A	INTRINSIC
low complexity region	208	229	N/A	INTRINSIC
Pfam:GidB	417	515	9e-9	PFAM
Pfam:Methyltransf_32	424	548	1.1e-15	PFAM
Pfam:MTS	430	508	5.3e-6	PFAM
Pfam:Methyltransf_31	440	571	2.6e-11	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000080583

SMART Domains

Protein: ENSMUSP00000079421
Gene: ENSMUSG00000028018

Domain	Start	End	E-Value	Type
low complexity region	52	62	N/A	INTRINSIC
low complexity region	168	181	N/A	INTRINSIC
low complexity region	195	205	N/A	INTRINSIC
low complexity region	208	229	N/A	INTRINSIC
Pfam:GidB	418	516	1.5e-8	PFAM
Pfam:Methyltransf_32	424	548	1.1e-15	PFAM
Pfam:Methyltransf_31	440	569	2.5e-11	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000160402

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000161577

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 96.8%
20x: 93.8%

Validation Efficiency

100% (76/76)

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc3	A	G	11: 94,258,421 (GRCm39)	Y475H	probably damaging	Het
Adamts12	G	T	15: 11,327,787 (GRCm39)	G1388V	probably damaging	Het
Anks6	C	T	4: 47,030,795 (GRCm39)	G601S	probably damaging	Het
Arhgap26	T	C	18: 39,429,982 (GRCm39)		probably null	Het
Atp7b	T	A	8: 22,518,617 (GRCm39)	I74F	probably damaging	Het
Bod1l	A	G	5: 41,977,337 (GRCm39)	Y1326H	probably benign	Het
Card11	T	C	5: 140,871,632 (GRCm39)	S690G	probably damaging	Het
Cbx3	A	G	6: 51,459,540 (GRCm39)	E169G	possibly damaging	Het
Cd28	A	T	1: 60,808,861 (GRCm39)	M192L	possibly damaging	Het
Chd6	T	C	2: 160,871,219 (GRCm39)		probably benign	Het
Cyp2c69	C	T	19: 39,866,056 (GRCm39)	C179Y	probably damaging	Het
Cyp7b1	A	T	3: 18,151,457 (GRCm39)	V252E	probably damaging	Het
Dcp2	G	T	18: 44,550,659 (GRCm39)	G378C	probably benign	Het
Dip2b	A	T	15: 100,058,410 (GRCm39)	I196L	possibly damaging	Het
Erbin	G	A	13: 103,987,346 (GRCm39)	P405S	probably damaging	Het
Etv1	A	G	12: 38,881,292 (GRCm39)		probably null	Het
F830104G03Rik	T	G	3: 56,797,917 (GRCm39)	K33T	unknown	Het
Fbln2	C	A	6: 91,210,477 (GRCm39)	H140Q	probably damaging	Het
Fxr1	A	G	3: 34,101,847 (GRCm39)	T109A	probably damaging	Het
Gm10110	T	C	14: 90,134,785 (GRCm39)		noncoding transcript	Het
Gm9949	C	T	18: 62,317,140 (GRCm39)		probably benign	Het
Grin2d	A	G	7: 45,504,039 (GRCm39)	L604P	probably damaging	Het
Ifna16	A	G	4: 88,594,681 (GRCm39)	V138A	probably benign	Het
Itpr2	T	A	6: 146,226,703 (GRCm39)	N1314I	probably damaging	Het
Kitl	T	C	10: 99,916,728 (GRCm39)	V177A	probably damaging	Het
L3mbtl1	A	T	2: 162,790,488 (GRCm39)	Q185L	probably damaging	Het
Lhx9	T	A	1: 138,766,092 (GRCm39)	N232I	probably benign	Het
Lnx1	T	C	5: 74,788,784 (GRCm39)	R111G	probably benign	Het
Lrrc41	A	G	4: 115,936,602 (GRCm39)	I72M	probably damaging	Het
Lrriq1	T	A	10: 103,069,899 (GRCm39)	D39V	possibly damaging	Het
Lyrm7	A	G	11: 54,731,936 (GRCm39)		probably benign	Het
Lyst	T	A	13: 13,857,734 (GRCm39)	Y2508N	probably damaging	Het
Masp2	A	T	4: 148,687,328 (GRCm39)	Y70F	probably benign	Het
Mc4r	T	C	18: 66,992,409 (GRCm39)	I235V	probably benign	Het
Med12l	G	A	3: 59,152,214 (GRCm39)	V1000M	probably damaging	Het
Morc2b	T	C	17: 33,357,712 (GRCm39)	H20R	probably benign	Het
Ms4a1	A	T	19: 11,231,857 (GRCm39)	S173T	probably damaging	Het
Myh13	A	C	11: 67,228,477 (GRCm39)	D339A	probably damaging	Het
Nars1	A	T	18: 64,633,643 (GRCm39)	Y542*	probably null	Het
Nectin2	G	A	7: 19,451,645 (GRCm39)	T463I	possibly damaging	Het
Nrg4	A	G	9: 55,166,679 (GRCm39)	F64L	probably benign	Het
Nrxn1	T	A	17: 91,395,605 (GRCm39)	I184F	probably benign	Het
Nxph2	C	T	2: 23,289,846 (GRCm39)	P66L	probably benign	Het
Or10ag2	C	T	2: 87,248,907 (GRCm39)	Q170*	probably null	Het
Or2v1	C	A	11: 49,025,608 (GRCm39)	F196L	probably damaging	Het
Pard3	A	T	8: 128,115,018 (GRCm39)	T579S	probably damaging	Het
Patj	A	G	4: 98,457,295 (GRCm39)	I48V	possibly damaging	Het
Paxbp1	T	C	16: 90,841,199 (GRCm39)		probably benign	Het
Pou2f3	A	T	9: 43,050,618 (GRCm39)	N235K	possibly damaging	Het
Ppp2r2c	A	G	5: 37,026,214 (GRCm39)	D17G	probably damaging	Het
Rgs8	A	G	1: 153,568,633 (GRCm39)		probably benign	Het
Rnd3	A	G	2: 51,038,762 (GRCm39)	V42A	probably damaging	Het
Rp1l1	A	G	14: 64,263,620 (GRCm39)	R247G	probably benign	Het
Sec31b	A	T	19: 44,524,172 (GRCm39)	V156D	probably damaging	Het
Slc22a2	T	A	17: 12,833,702 (GRCm39)	Y461N	possibly damaging	Het
Spag6l	T	C	16: 16,599,622 (GRCm39)	K280R	possibly damaging	Het
Spata31d1a	A	G	13: 59,850,337 (GRCm39)	L597P	probably damaging	Het
Srr	G	T	11: 74,798,606 (GRCm39)		probably benign	Het
Sry	C	G	Y: 2,662,864 (GRCm39)	Q265H	unknown	Het
Tgif1	A	C	17: 71,156,700 (GRCm39)		probably null	Het
Tle3	A	T	9: 61,280,781 (GRCm39)		probably benign	Het
Tubgcp4	A	G	2: 121,020,343 (GRCm39)	T439A	probably benign	Het
Twist1	C	T	12: 34,008,350 (GRCm39)	T125M	probably damaging	Het
Unc13a	T	A	8: 72,111,260 (GRCm39)	D317V	possibly damaging	Het
Vmn1r227	T	A	17: 20,955,407 (GRCm39)		noncoding transcript	Het
Vps72	G	T	3: 95,025,498 (GRCm39)		probably benign	Het
Zfp184	T	C	13: 22,144,498 (GRCm39)	S735P	possibly damaging	Het
Zfp42	A	T	8: 43,748,725 (GRCm39)	C259S	possibly damaging	Het
Zmiz2	A	G	11: 6,353,251 (GRCm39)	H678R	probably damaging	Het

Other mutations in Gstcd

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01540:Gstcd	APN	3	132,692,175 (GRCm39)	missense	probably damaging	0.96
IGL01800:Gstcd	APN	3	132,790,335 (GRCm39)	critical splice donor site	probably null
IGL02434:Gstcd	APN	3	132,701,963 (GRCm39)	splice site	probably benign
IGL02720:Gstcd	APN	3	132,777,722 (GRCm39)	missense	probably benign	0.00
R0367:Gstcd	UTSW	3	132,692,138 (GRCm39)	splice site	probably benign
R0378:Gstcd	UTSW	3	132,692,169 (GRCm39)	missense	probably damaging	1.00
R0382:Gstcd	UTSW	3	132,692,169 (GRCm39)	missense	probably damaging	1.00
R0465:Gstcd	UTSW	3	132,688,905 (GRCm39)	missense	probably benign	0.04
R1295:Gstcd	UTSW	3	132,711,389 (GRCm39)	missense	probably damaging	1.00
R1861:Gstcd	UTSW	3	132,688,868 (GRCm39)	missense	probably damaging	1.00
R2056:Gstcd	UTSW	3	132,787,814 (GRCm39)	missense	probably benign	0.00
R2331:Gstcd	UTSW	3	132,704,641 (GRCm39)	missense	probably damaging	0.98
R2513:Gstcd	UTSW	3	132,788,082 (GRCm39)	missense	possibly damaging	0.87
R2513:Gstcd	UTSW	3	132,788,081 (GRCm39)	missense	possibly damaging	0.59
R3547:Gstcd	UTSW	3	132,790,599 (GRCm39)	missense	possibly damaging	0.86
R4022:Gstcd	UTSW	3	132,787,829 (GRCm39)	missense	probably damaging	1.00
R4713:Gstcd	UTSW	3	132,688,860 (GRCm39)	missense	probably damaging	1.00
R5152:Gstcd	UTSW	3	132,790,717 (GRCm39)	missense	possibly damaging	0.95
R5165:Gstcd	UTSW	3	132,790,440 (GRCm39)	missense	probably damaging	0.99
R6106:Gstcd	UTSW	3	132,704,675 (GRCm39)	missense	probably benign	0.02
R6177:Gstcd	UTSW	3	132,787,834 (GRCm39)	missense	probably damaging	1.00
R7100:Gstcd	UTSW	3	132,790,704 (GRCm39)	missense	probably benign	0.01
R7264:Gstcd	UTSW	3	132,790,540 (GRCm39)	missense	probably benign	0.00
R7785:Gstcd	UTSW	3	132,787,868 (GRCm39)	missense	probably damaging	0.99
R7786:Gstcd	UTSW	3	132,787,868 (GRCm39)	missense	probably damaging	0.99
R7972:Gstcd	UTSW	3	132,777,894 (GRCm39)	missense	probably benign	0.10
R7975:Gstcd	UTSW	3	132,777,863 (GRCm39)	missense	probably damaging	1.00
R8029:Gstcd	UTSW	3	132,787,868 (GRCm39)	missense	probably damaging	0.99
R8036:Gstcd	UTSW	3	132,787,868 (GRCm39)	missense	probably damaging	0.99
R8088:Gstcd	UTSW	3	132,787,868 (GRCm39)	missense	probably damaging	0.99
R8716:Gstcd	UTSW	3	132,688,950 (GRCm39)	missense	probably damaging	1.00
R8722:Gstcd	UTSW	3	132,777,822 (GRCm39)	nonsense	probably null
R9276:Gstcd	UTSW	3	132,777,665 (GRCm39)	missense	probably damaging	1.00
R9575:Gstcd	UTSW	3	132,704,708 (GRCm39)	missense	probably damaging	1.00
R9789:Gstcd	UTSW	3	132,790,357 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ATTAACCTTACCTGGCACGAG -3'
(R):5'- GCAGTTCACTCCTTCATGTGTG -3'

Sequencing Primer
(F):5'- CACGAGGGCAGCATGTG -3'
(R):5'- TACATATGGACATCCGTACTAGGAC -3'

Posted On

2016-03-17