Incidental Mutation 'R4897:Vmn2r79'
ID |
375815 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn2r79
|
Ensembl Gene |
ENSMUSG00000090362 |
Gene Name |
vomeronasal 2, receptor 79 |
Synonyms |
EG621430 |
MMRRC Submission |
042501-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.093)
|
Stock # |
R4897 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
7 |
Chromosomal Location |
86645673-86687176 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 86650675 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Phenylalanine to Leucine
at position 154
(F154L)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000132478
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000164462]
|
AlphaFold |
E9Q067 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000164462
AA Change: F154L
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
SMART Domains |
Protein: ENSMUSP00000132478 Gene: ENSMUSG00000090362 AA Change: F154L
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
18 |
N/A |
INTRINSIC |
Pfam:ANF_receptor
|
75 |
464 |
1.9e-31 |
PFAM |
Pfam:NCD3G
|
506 |
559 |
3.1e-21 |
PFAM |
Pfam:7tm_3
|
592 |
827 |
2.8e-53 |
PFAM |
|
Meta Mutation Damage Score |
0.0898 |
Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.4%
- 10x: 96.6%
- 20x: 93.1%
|
Validation Efficiency |
100% (79/79) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 73 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
4930402F06Rik |
C |
A |
2: 35,266,309 (GRCm39) |
M120I |
probably damaging |
Het |
4933427D14Rik |
A |
T |
11: 72,082,342 (GRCm39) |
L328Q |
probably damaging |
Het |
Adgrv1 |
A |
C |
13: 81,709,704 (GRCm39) |
|
probably null |
Het |
Ankrd46 |
A |
T |
15: 36,484,279 (GRCm39) |
|
probably benign |
Het |
Arhgef18 |
A |
T |
8: 3,494,979 (GRCm39) |
M413L |
probably benign |
Het |
Atp6v1e1 |
G |
A |
6: 120,781,044 (GRCm39) |
T87M |
probably null |
Het |
Bap1 |
T |
C |
14: 30,980,402 (GRCm39) |
|
probably benign |
Het |
Brf1 |
A |
G |
12: 112,929,507 (GRCm39) |
L385P |
probably benign |
Het |
C1qtnf1 |
A |
T |
11: 118,338,938 (GRCm39) |
N203Y |
probably damaging |
Het |
Catsperb |
A |
T |
12: 101,569,025 (GRCm39) |
N899I |
probably damaging |
Het |
Ccnjl |
A |
C |
11: 43,470,718 (GRCm39) |
D162A |
probably damaging |
Het |
Cd248 |
A |
C |
19: 5,119,195 (GRCm39) |
I348L |
probably benign |
Het |
Cdc20 |
T |
C |
4: 118,293,029 (GRCm39) |
T265A |
probably benign |
Het |
Cdca5 |
T |
A |
19: 6,140,427 (GRCm39) |
L196* |
probably null |
Het |
Cdk4 |
T |
A |
10: 126,900,444 (GRCm39) |
|
probably benign |
Het |
Cldn10 |
G |
A |
14: 119,025,725 (GRCm39) |
G53S |
possibly damaging |
Het |
Clec4b2 |
G |
T |
6: 123,177,999 (GRCm39) |
E105* |
probably null |
Het |
Dapk1 |
T |
A |
13: 60,909,600 (GRCm39) |
D1404E |
probably benign |
Het |
Dnah1 |
T |
C |
14: 30,989,496 (GRCm39) |
Y3308C |
probably damaging |
Het |
Dnah17 |
A |
C |
11: 117,969,419 (GRCm39) |
Y2260D |
probably damaging |
Het |
Dock8 |
T |
G |
19: 25,159,001 (GRCm39) |
S1720A |
probably benign |
Het |
Erc1 |
A |
G |
6: 119,754,947 (GRCm39) |
|
probably null |
Het |
Ergic1 |
A |
G |
17: 26,848,597 (GRCm39) |
I66V |
probably benign |
Het |
Fam186a |
T |
C |
15: 99,843,158 (GRCm39) |
T1029A |
possibly damaging |
Het |
Fat4 |
A |
T |
3: 39,034,781 (GRCm39) |
Y2811F |
probably damaging |
Het |
Flt3 |
A |
G |
5: 147,306,110 (GRCm39) |
M310T |
probably damaging |
Het |
Ganab |
T |
A |
19: 8,892,355 (GRCm39) |
C844S |
probably benign |
Het |
Gas2l2 |
C |
A |
11: 83,320,041 (GRCm39) |
V72F |
probably damaging |
Het |
Gm14401 |
T |
A |
2: 176,778,573 (GRCm39) |
C220S |
probably damaging |
Het |
Hmmr |
A |
T |
11: 40,619,261 (GRCm39) |
V73E |
probably benign |
Het |
Idi2l |
T |
G |
13: 8,990,637 (GRCm39) |
|
probably benign |
Het |
Ifih1 |
G |
T |
2: 62,465,358 (GRCm39) |
|
probably benign |
Het |
Jak3 |
A |
G |
8: 72,138,048 (GRCm39) |
E833G |
probably damaging |
Het |
Lama2 |
TTTGCGCATT |
TTT |
10: 26,919,639 (GRCm39) |
|
probably null |
Het |
Ldb1 |
G |
A |
19: 46,023,132 (GRCm39) |
A217V |
probably benign |
Het |
Lrrc8c |
A |
G |
5: 105,755,955 (GRCm39) |
T577A |
probably benign |
Het |
Mfn1 |
T |
A |
3: 32,600,711 (GRCm39) |
|
probably benign |
Het |
Mki67 |
G |
A |
7: 135,298,474 (GRCm39) |
P2187S |
probably damaging |
Het |
Mrc1 |
T |
A |
2: 14,323,952 (GRCm39) |
D1096E |
probably benign |
Het |
Msi1 |
A |
G |
5: 115,573,654 (GRCm39) |
|
probably benign |
Het |
Msto1 |
T |
A |
3: 88,819,559 (GRCm39) |
I152F |
probably benign |
Het |
Myo9a |
A |
G |
9: 59,803,800 (GRCm39) |
R2060G |
probably benign |
Het |
Nnt |
A |
T |
13: 119,541,107 (GRCm39) |
C44* |
probably null |
Het |
Nup210l |
A |
G |
3: 90,100,378 (GRCm39) |
D1468G |
probably damaging |
Het |
Or1j16 |
T |
C |
2: 36,530,906 (GRCm39) |
L285P |
probably damaging |
Het |
Or4c10b |
A |
G |
2: 89,711,476 (GRCm39) |
E102G |
probably benign |
Het |
Or5d46 |
C |
A |
2: 88,174,686 (GRCm39) |
C129F |
possibly damaging |
Het |
Or7a40 |
T |
C |
16: 16,491,482 (GRCm39) |
D121G |
probably damaging |
Het |
P2rx3 |
G |
A |
2: 84,855,270 (GRCm39) |
T62I |
probably damaging |
Het |
Pabpc4l |
G |
T |
3: 46,401,578 (GRCm39) |
T22K |
probably damaging |
Het |
Pcdha7 |
A |
G |
18: 37,108,646 (GRCm39) |
D557G |
probably damaging |
Het |
Pcdhb20 |
A |
G |
18: 37,639,298 (GRCm39) |
K608R |
possibly damaging |
Het |
Pcnx1 |
A |
G |
12: 81,964,939 (GRCm39) |
S369G |
probably damaging |
Het |
Plod1 |
T |
C |
4: 148,004,736 (GRCm39) |
I455V |
probably benign |
Het |
Prune2 |
A |
T |
19: 17,099,219 (GRCm39) |
E1574D |
probably benign |
Het |
Ptar1 |
T |
A |
19: 23,680,472 (GRCm39) |
L96H |
probably damaging |
Het |
Rabgap1 |
T |
C |
2: 37,450,583 (GRCm39) |
S904P |
probably benign |
Het |
Rps6ka4 |
C |
T |
19: 6,815,467 (GRCm39) |
V176I |
probably benign |
Het |
Rufy4 |
T |
C |
1: 74,186,822 (GRCm39) |
C537R |
probably damaging |
Het |
Runx1t1 |
T |
A |
4: 13,771,459 (GRCm39) |
M1K |
probably null |
Het |
Serinc4 |
T |
A |
2: 121,282,905 (GRCm39) |
Y419F |
probably damaging |
Het |
Serpina12 |
A |
T |
12: 104,004,056 (GRCm39) |
M192K |
possibly damaging |
Het |
Spata21 |
T |
A |
4: 140,832,261 (GRCm39) |
M474K |
probably damaging |
Het |
Stpg1 |
T |
C |
4: 135,246,676 (GRCm39) |
S135P |
possibly damaging |
Het |
Tdrkh |
A |
G |
3: 94,336,671 (GRCm39) |
D481G |
probably damaging |
Het |
Ube2e1 |
A |
C |
14: 18,285,268 (GRCm38) |
S68R |
probably damaging |
Het |
Vcpip1 |
A |
C |
1: 9,817,572 (GRCm39) |
N270K |
probably damaging |
Het |
Vwa3b |
A |
G |
1: 37,153,684 (GRCm39) |
|
probably benign |
Het |
Xdh |
C |
A |
17: 74,207,703 (GRCm39) |
V885L |
probably benign |
Het |
Zfp141 |
A |
T |
7: 42,125,629 (GRCm39) |
V281D |
probably benign |
Het |
Zfp317 |
T |
A |
9: 19,558,143 (GRCm39) |
I119N |
probably benign |
Het |
Zfp345 |
G |
A |
2: 150,314,608 (GRCm39) |
R310C |
probably benign |
Het |
Zfp760 |
G |
A |
17: 21,942,229 (GRCm39) |
C468Y |
probably benign |
Het |
|
Other mutations in Vmn2r79 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01401:Vmn2r79
|
APN |
7 |
86,686,481 (GRCm39) |
missense |
probably benign |
0.01 |
IGL01675:Vmn2r79
|
APN |
7 |
86,645,856 (GRCm39) |
missense |
probably benign |
0.01 |
IGL01760:Vmn2r79
|
APN |
7 |
86,651,366 (GRCm39) |
missense |
probably benign |
|
IGL01834:Vmn2r79
|
APN |
7 |
86,686,354 (GRCm39) |
missense |
probably benign |
0.01 |
IGL01843:Vmn2r79
|
APN |
7 |
86,686,485 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01914:Vmn2r79
|
APN |
7 |
86,686,571 (GRCm39) |
missense |
probably benign |
0.14 |
IGL01980:Vmn2r79
|
APN |
7 |
86,686,290 (GRCm39) |
missense |
possibly damaging |
0.49 |
IGL02438:Vmn2r79
|
APN |
7 |
86,651,744 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL02740:Vmn2r79
|
APN |
7 |
86,653,366 (GRCm39) |
missense |
probably benign |
0.00 |
IGL03052:Vmn2r79
|
UTSW |
7 |
86,652,799 (GRCm39) |
missense |
probably benign |
0.00 |
PIT4445001:Vmn2r79
|
UTSW |
7 |
86,651,408 (GRCm39) |
missense |
possibly damaging |
0.46 |
R0096:Vmn2r79
|
UTSW |
7 |
86,686,527 (GRCm39) |
missense |
probably damaging |
1.00 |
R0096:Vmn2r79
|
UTSW |
7 |
86,686,527 (GRCm39) |
missense |
probably damaging |
1.00 |
R0270:Vmn2r79
|
UTSW |
7 |
86,652,594 (GRCm39) |
missense |
probably benign |
0.00 |
R0336:Vmn2r79
|
UTSW |
7 |
86,651,287 (GRCm39) |
missense |
probably benign |
0.15 |
R0418:Vmn2r79
|
UTSW |
7 |
86,651,611 (GRCm39) |
missense |
probably benign |
0.18 |
R1070:Vmn2r79
|
UTSW |
7 |
86,652,681 (GRCm39) |
missense |
probably damaging |
1.00 |
R1234:Vmn2r79
|
UTSW |
7 |
86,653,307 (GRCm39) |
missense |
possibly damaging |
0.71 |
R1459:Vmn2r79
|
UTSW |
7 |
86,687,002 (GRCm39) |
missense |
probably benign |
0.01 |
R1513:Vmn2r79
|
UTSW |
7 |
86,686,652 (GRCm39) |
missense |
probably benign |
0.01 |
R1624:Vmn2r79
|
UTSW |
7 |
86,653,247 (GRCm39) |
critical splice acceptor site |
probably null |
|
R1633:Vmn2r79
|
UTSW |
7 |
86,687,042 (GRCm39) |
missense |
possibly damaging |
0.52 |
R1676:Vmn2r79
|
UTSW |
7 |
86,651,839 (GRCm39) |
missense |
probably benign |
|
R1781:Vmn2r79
|
UTSW |
7 |
86,651,555 (GRCm39) |
missense |
probably benign |
0.00 |
R1794:Vmn2r79
|
UTSW |
7 |
86,650,621 (GRCm39) |
missense |
probably benign |
0.37 |
R1823:Vmn2r79
|
UTSW |
7 |
86,687,080 (GRCm39) |
missense |
probably damaging |
1.00 |
R2013:Vmn2r79
|
UTSW |
7 |
86,653,289 (GRCm39) |
missense |
possibly damaging |
0.50 |
R2018:Vmn2r79
|
UTSW |
7 |
86,651,634 (GRCm39) |
missense |
probably benign |
0.07 |
R2019:Vmn2r79
|
UTSW |
7 |
86,651,634 (GRCm39) |
missense |
probably benign |
0.07 |
R2177:Vmn2r79
|
UTSW |
7 |
86,645,839 (GRCm39) |
missense |
possibly damaging |
0.94 |
R2984:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
R3719:Vmn2r79
|
UTSW |
7 |
86,651,245 (GRCm39) |
missense |
probably benign |
0.05 |
R3798:Vmn2r79
|
UTSW |
7 |
86,651,402 (GRCm39) |
missense |
possibly damaging |
0.88 |
R3969:Vmn2r79
|
UTSW |
7 |
86,652,801 (GRCm39) |
missense |
probably damaging |
1.00 |
R4182:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
R4183:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
R4245:Vmn2r79
|
UTSW |
7 |
86,651,624 (GRCm39) |
missense |
possibly damaging |
0.73 |
R4301:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
R4391:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
R4393:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
R4394:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
R4396:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
R4397:Vmn2r79
|
UTSW |
7 |
86,651,099 (GRCm39) |
missense |
possibly damaging |
0.85 |
R4592:Vmn2r79
|
UTSW |
7 |
86,653,319 (GRCm39) |
missense |
possibly damaging |
0.86 |
R4697:Vmn2r79
|
UTSW |
7 |
86,687,168 (GRCm39) |
missense |
probably damaging |
0.98 |
R5016:Vmn2r79
|
UTSW |
7 |
86,686,548 (GRCm39) |
missense |
probably benign |
0.00 |
R5058:Vmn2r79
|
UTSW |
7 |
86,651,423 (GRCm39) |
missense |
probably damaging |
0.98 |
R5177:Vmn2r79
|
UTSW |
7 |
86,651,177 (GRCm39) |
missense |
probably damaging |
0.97 |
R6078:Vmn2r79
|
UTSW |
7 |
86,653,319 (GRCm39) |
missense |
possibly damaging |
0.86 |
R6079:Vmn2r79
|
UTSW |
7 |
86,653,319 (GRCm39) |
missense |
possibly damaging |
0.86 |
R6138:Vmn2r79
|
UTSW |
7 |
86,653,319 (GRCm39) |
missense |
possibly damaging |
0.86 |
R6257:Vmn2r79
|
UTSW |
7 |
86,651,778 (GRCm39) |
missense |
probably benign |
0.27 |
R6260:Vmn2r79
|
UTSW |
7 |
86,686,365 (GRCm39) |
missense |
probably benign |
0.00 |
R6307:Vmn2r79
|
UTSW |
7 |
86,686,976 (GRCm39) |
missense |
probably damaging |
1.00 |
R6323:Vmn2r79
|
UTSW |
7 |
86,650,522 (GRCm39) |
missense |
probably benign |
0.05 |
R6374:Vmn2r79
|
UTSW |
7 |
86,651,498 (GRCm39) |
missense |
probably benign |
0.02 |
R6530:Vmn2r79
|
UTSW |
7 |
86,651,252 (GRCm39) |
missense |
possibly damaging |
0.91 |
R6546:Vmn2r79
|
UTSW |
7 |
86,652,741 (GRCm39) |
missense |
probably benign |
0.01 |
R6682:Vmn2r79
|
UTSW |
7 |
86,653,370 (GRCm39) |
missense |
possibly damaging |
0.69 |
R6858:Vmn2r79
|
UTSW |
7 |
86,686,580 (GRCm39) |
missense |
probably benign |
|
R6965:Vmn2r79
|
UTSW |
7 |
86,651,100 (GRCm39) |
missense |
probably benign |
0.10 |
R7130:Vmn2r79
|
UTSW |
7 |
86,651,474 (GRCm39) |
missense |
probably damaging |
0.99 |
R7156:Vmn2r79
|
UTSW |
7 |
86,686,851 (GRCm39) |
missense |
probably damaging |
0.98 |
R7604:Vmn2r79
|
UTSW |
7 |
86,652,592 (GRCm39) |
critical splice acceptor site |
probably null |
|
R7691:Vmn2r79
|
UTSW |
7 |
86,687,111 (GRCm39) |
missense |
probably damaging |
0.96 |
R8055:Vmn2r79
|
UTSW |
7 |
86,686,541 (GRCm39) |
missense |
possibly damaging |
0.94 |
R8070:Vmn2r79
|
UTSW |
7 |
86,651,336 (GRCm39) |
missense |
probably benign |
|
R8073:Vmn2r79
|
UTSW |
7 |
86,651,462 (GRCm39) |
missense |
probably benign |
0.00 |
R8145:Vmn2r79
|
UTSW |
7 |
86,686,862 (GRCm39) |
missense |
probably benign |
0.02 |
R8263:Vmn2r79
|
UTSW |
7 |
86,686,726 (GRCm39) |
missense |
possibly damaging |
0.89 |
R8350:Vmn2r79
|
UTSW |
7 |
86,686,741 (GRCm39) |
nonsense |
probably null |
|
R8400:Vmn2r79
|
UTSW |
7 |
86,651,308 (GRCm39) |
missense |
probably benign |
0.00 |
R8814:Vmn2r79
|
UTSW |
7 |
86,651,714 (GRCm39) |
missense |
probably benign |
0.00 |
R8862:Vmn2r79
|
UTSW |
7 |
86,645,712 (GRCm39) |
missense |
probably benign |
0.23 |
R9146:Vmn2r79
|
UTSW |
7 |
86,650,681 (GRCm39) |
nonsense |
probably null |
|
R9276:Vmn2r79
|
UTSW |
7 |
86,687,045 (GRCm39) |
missense |
probably damaging |
1.00 |
R9361:Vmn2r79
|
UTSW |
7 |
86,652,822 (GRCm39) |
critical splice donor site |
probably null |
|
R9676:Vmn2r79
|
UTSW |
7 |
86,686,452 (GRCm39) |
missense |
probably damaging |
1.00 |
U15987:Vmn2r79
|
UTSW |
7 |
86,653,319 (GRCm39) |
missense |
possibly damaging |
0.86 |
X0054:Vmn2r79
|
UTSW |
7 |
86,653,270 (GRCm39) |
missense |
probably benign |
0.01 |
Z1088:Vmn2r79
|
UTSW |
7 |
86,651,549 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1176:Vmn2r79
|
UTSW |
7 |
86,686,377 (GRCm39) |
missense |
probably benign |
|
Z1176:Vmn2r79
|
UTSW |
7 |
86,651,526 (GRCm39) |
missense |
probably benign |
0.00 |
|
Predicted Primers |
PCR Primer
(F):5'- TGACCCTTAAGACCATCCACTTG -3'
(R):5'- CTCCTGCCCATTTGTCATAAAG -3'
Sequencing Primer
(F):5'- TTGCTGCTGAAGAAATCAATAGG -3'
(R):5'- CTGCCCATTTGTCATAAAGTTTTTG -3'
|
Posted On |
2016-03-17 |