Incidental Mutation 'R4899:Sgsm3'
ID 376038
Institutional Source Beutler Lab
Gene Symbol Sgsm3
Ensembl Gene ENSMUSG00000042303
Gene Name small G protein signaling modulator 3
Synonyms 1810012I01Rik, Rutbc3, CIP85
MMRRC Submission 042503-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.193) question?
Stock # R4899 (G1)
Quality Score 225
Status Not validated
Chromosome 15
Chromosomal Location 80861966-80896491 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 80890980 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Serine at position 147 (N147S)
Ref Sequence ENSEMBL: ENSMUSP00000122543 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000137004] [ENSMUST00000139517] [ENSMUST00000137255] [ENSMUST00000143147] [ENSMUST00000228971] [ENSMUST00000229727]
AlphaFold Q8VCZ6
PDB Structure Solution structure of the SH3 domain of mouse RUN and TBC1 domain containing 3 [SOLUTION NMR]
Predicted Effect probably benign
Transcript: ENSMUST00000042506
AA Change: N157S

PolyPhen 2 Score 0.129 (Sensitivity: 0.93; Specificity: 0.86)
SMART Domains Protein: ENSMUSP00000043311
Gene: ENSMUSG00000103565
AA Change: N157S

DomainStartEndE-ValueType
TBC 121 338 3.6e-62 SMART
low complexity region 391 401 N/A INTRINSIC
SH3 493 548 6.34e-19 SMART
RUN 664 726 1.29e-21 SMART
Predicted Effect unknown
Transcript: ENSMUST00000124845
AA Change: N74S
Predicted Effect noncoding transcript
Transcript: ENSMUST00000132039
Predicted Effect noncoding transcript
Transcript: ENSMUST00000134511
Predicted Effect noncoding transcript
Transcript: ENSMUST00000134559
Predicted Effect probably benign
Transcript: ENSMUST00000137004
Predicted Effect probably benign
Transcript: ENSMUST00000139517
AA Change: N147S

PolyPhen 2 Score 0.129 (Sensitivity: 0.93; Specificity: 0.86)
SMART Domains Protein: ENSMUSP00000122543
Gene: ENSMUSG00000042303
AA Change: N147S

DomainStartEndE-ValueType
TBC 111 328 3.6e-62 SMART
low complexity region 381 391 N/A INTRINSIC
SH3 483 538 6.34e-19 SMART
RUN 654 716 1.29e-21 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000156783
Predicted Effect noncoding transcript
Transcript: ENSMUST00000149345
Predicted Effect noncoding transcript
Transcript: ENSMUST00000156064
Predicted Effect noncoding transcript
Transcript: ENSMUST00000138550
Predicted Effect probably benign
Transcript: ENSMUST00000154904
SMART Domains Protein: ENSMUSP00000118050
Gene: ENSMUSG00000042303

DomainStartEndE-ValueType
low complexity region 23 36 N/A INTRINSIC
SH3 114 169 6.34e-19 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000137255
Predicted Effect noncoding transcript
Transcript: ENSMUST00000230118
Predicted Effect probably benign
Transcript: ENSMUST00000143147
Predicted Effect probably benign
Transcript: ENSMUST00000228971
Predicted Effect probably benign
Transcript: ENSMUST00000229727
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.4%
  • 10x: 96.7%
  • 20x: 93.7%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 75 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abhd18 C G 3: 40,860,304 (GRCm39) probably null Het
Adra2c A T 5: 35,437,705 (GRCm39) Y159F probably damaging Het
Alkal2 T A 12: 30,934,972 (GRCm39) S64T probably benign Het
Apbb1ip T C 2: 22,713,361 (GRCm39) V72A unknown Het
Atp13a5 A G 16: 29,197,318 (GRCm39) L13P probably damaging Het
Azin2 G A 4: 128,828,446 (GRCm39) P254S probably benign Het
Bmpr1b T C 3: 141,546,444 (GRCm39) R481G probably damaging Het
Cacna2d4 G A 6: 119,245,157 (GRCm39) W288* probably null Het
Cass4 A G 2: 172,269,789 (GRCm39) T626A probably benign Het
Cep112 T A 11: 108,497,110 (GRCm39) D683E probably damaging Het
Cfap300 A T 9: 8,022,494 (GRCm39) S243T possibly damaging Het
Chat G T 14: 32,170,934 (GRCm39) S188R possibly damaging Het
Cit A G 5: 116,001,087 (GRCm39) Y162C possibly damaging Het
Clca3a1 T A 3: 144,443,722 (GRCm39) Y676F probably damaging Het
Clec2h A G 6: 128,652,787 (GRCm39) N185D probably benign Het
Cnbd2 G T 2: 156,181,141 (GRCm39) V192F probably benign Het
Col6a3 C A 1: 90,730,149 (GRCm39) G1112V probably damaging Het
Csta2 A T 16: 36,077,731 (GRCm39) Y96F possibly damaging Het
Cyp3a25 A G 5: 145,914,481 (GRCm39) F483S possibly damaging Het
Dscam T C 16: 96,485,018 (GRCm39) E1103G probably benign Het
Dync2h1 G A 9: 7,131,921 (GRCm39) Q1629* probably null Het
Enpp6 A G 8: 47,440,118 (GRCm39) Y38C probably damaging Het
Epg5 T A 18: 78,028,272 (GRCm39) L1271Q probably damaging Het
Fam47e G A 5: 92,722,528 (GRCm39) V75I probably benign Het
Fat3 T C 9: 15,881,095 (GRCm39) D3259G probably damaging Het
Fbxw28 T C 9: 109,159,921 (GRCm39) D211G probably damaging Het
Flnc A G 6: 29,446,842 (GRCm39) N990D probably benign Het
Frat1 T G 19: 41,818,761 (GRCm39) L52R probably damaging Het
Ftmt C G 18: 52,464,658 (GRCm39) probably benign Het
H2-M1 C T 17: 36,982,112 (GRCm39) G163D probably benign Het
Hapln1 A G 13: 89,749,769 (GRCm39) K105E possibly damaging Het
Igkv17-127 G T 6: 67,838,381 (GRCm39) A31S probably benign Het
Il6st T C 13: 112,637,695 (GRCm39) L628P probably damaging Het
Kcnj6 A G 16: 94,633,472 (GRCm39) I213T probably damaging Het
Kidins220 T C 12: 25,063,442 (GRCm39) probably null Het
Lama2 TTTGCGCATT TTT 10: 26,919,639 (GRCm39) probably null Het
Llgl1 C T 11: 60,600,394 (GRCm39) P581L probably benign Het
Mertk C A 2: 128,625,845 (GRCm39) P660Q probably damaging Het
Mrtfa A G 15: 80,902,587 (GRCm39) Y241H probably damaging Het
Mtarc2 A T 1: 184,577,821 (GRCm39) I65N probably damaging Het
Napepld A G 5: 21,888,438 (GRCm39) Y4H probably benign Het
Ncam1 T A 9: 49,456,551 (GRCm39) probably null Het
Nuak2 A T 1: 132,252,724 (GRCm39) K93* probably null Het
Oat A T 7: 132,165,951 (GRCm39) D211E probably benign Het
Or1j19 A G 2: 36,676,810 (GRCm39) Q91R probably benign Het
Or2aj6 G A 16: 19,442,950 (GRCm39) A300V probably benign Het
Or4c109 A C 2: 88,818,454 (GRCm39) L31V probably null Het
Or51b17 A G 7: 103,542,672 (GRCm39) I90T possibly damaging Het
Or7a39 A T 10: 78,715,041 (GRCm39) S12C probably benign Het
Pde4dip C A 3: 97,616,874 (GRCm39) K1789N probably damaging Het
Piezo2 T C 18: 63,211,862 (GRCm39) I1322V possibly damaging Het
Pih1d1 A G 7: 44,803,951 (GRCm39) probably benign Het
Plekhd1 T C 12: 80,769,101 (GRCm39) S454P probably damaging Het
Polr2h G A 16: 20,539,303 (GRCm39) V89M probably damaging Het
Pptc7 G A 5: 122,422,780 (GRCm39) G17S possibly damaging Het
Pramel55 T C 5: 95,949,586 (GRCm39) V111A probably benign Het
Ptpra T C 2: 130,386,356 (GRCm39) V602A probably damaging Het
Rnf123 C T 9: 107,940,879 (GRCm39) R654H probably damaging Het
Rufy4 T C 1: 74,186,822 (GRCm39) C537R probably damaging Het
Samsn1 A G 16: 75,675,991 (GRCm39) S135P probably damaging Het
Shoc1 T C 4: 59,062,640 (GRCm39) Y872C probably damaging Het
Slc22a29 T C 19: 8,138,933 (GRCm39) T510A probably benign Het
Smc4 T A 3: 68,939,144 (GRCm39) H978Q probably damaging Het
Sox7 G A 14: 64,185,927 (GRCm39) R321H probably damaging Het
Spred3 T C 7: 28,861,258 (GRCm39) D307G probably damaging Het
Syne2 T A 12: 75,900,875 (GRCm39) D11E probably benign Het
Tob1 ACAGCAGCAGCAGCAGCAGCAGCAGCA ACAGCAGCAGCAGCAGCAGCAGCA 11: 94,105,278 (GRCm39) probably benign Het
Top2b A T 14: 16,387,313 (GRCm38) I134F probably damaging Het
Tspan1 T A 4: 116,020,563 (GRCm39) R206* probably null Het
Ttc3 A T 16: 94,230,314 (GRCm39) N837I probably damaging Het
Vmn1r36 T C 6: 66,693,549 (GRCm39) T72A possibly damaging Het
Vmn2r10 A G 5: 109,151,324 (GRCm39) S97P probably damaging Het
Zfp2 T A 11: 50,790,841 (GRCm39) I401F probably damaging Het
Zfp629 T C 7: 127,210,190 (GRCm39) T540A possibly damaging Het
Zfr G A 15: 12,166,231 (GRCm39) V834I probably benign Het
Other mutations in Sgsm3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01330:Sgsm3 APN 15 80,895,053 (GRCm39) unclassified probably benign
IGL03370:Sgsm3 APN 15 80,895,855 (GRCm39) critical splice acceptor site probably null
R0109:Sgsm3 UTSW 15 80,893,667 (GRCm39) missense probably damaging 0.99
R0267:Sgsm3 UTSW 15 80,890,803 (GRCm39) missense probably damaging 0.96
R0382:Sgsm3 UTSW 15 80,892,515 (GRCm39) nonsense probably null
R0441:Sgsm3 UTSW 15 80,893,971 (GRCm39) missense possibly damaging 0.87
R0631:Sgsm3 UTSW 15 80,895,937 (GRCm39) makesense probably null
R0905:Sgsm3 UTSW 15 80,895,546 (GRCm39) missense probably damaging 1.00
R1364:Sgsm3 UTSW 15 80,892,143 (GRCm39) missense probably damaging 0.98
R1515:Sgsm3 UTSW 15 80,894,457 (GRCm39) missense probably benign 0.08
R2226:Sgsm3 UTSW 15 80,888,069 (GRCm39) missense probably damaging 0.96
R2227:Sgsm3 UTSW 15 80,888,069 (GRCm39) missense probably damaging 0.96
R2414:Sgsm3 UTSW 15 80,890,946 (GRCm39) missense probably benign 0.10
R2508:Sgsm3 UTSW 15 80,888,073 (GRCm39) critical splice donor site probably null
R4240:Sgsm3 UTSW 15 80,895,983 (GRCm39) unclassified probably benign
R4302:Sgsm3 UTSW 15 80,894,502 (GRCm39) unclassified probably benign
R5234:Sgsm3 UTSW 15 80,892,145 (GRCm39) missense probably damaging 1.00
R5288:Sgsm3 UTSW 15 80,892,200 (GRCm39) missense probably benign 0.00
R5385:Sgsm3 UTSW 15 80,892,200 (GRCm39) missense probably benign 0.00
R5386:Sgsm3 UTSW 15 80,892,200 (GRCm39) missense probably benign 0.00
R5682:Sgsm3 UTSW 15 80,895,661 (GRCm39) critical splice acceptor site probably null
R6052:Sgsm3 UTSW 15 80,893,464 (GRCm39) missense probably benign
R6349:Sgsm3 UTSW 15 80,892,547 (GRCm39) missense probably benign 0.00
R6453:Sgsm3 UTSW 15 80,895,515 (GRCm39) missense probably damaging 0.96
R6486:Sgsm3 UTSW 15 80,895,546 (GRCm39) missense probably damaging 1.00
R6591:Sgsm3 UTSW 15 80,893,063 (GRCm39) missense possibly damaging 0.94
R6642:Sgsm3 UTSW 15 80,893,901 (GRCm39) missense probably damaging 0.99
R6691:Sgsm3 UTSW 15 80,893,063 (GRCm39) missense possibly damaging 0.94
R6897:Sgsm3 UTSW 15 80,893,095 (GRCm39) missense probably benign 0.00
R7038:Sgsm3 UTSW 15 80,892,576 (GRCm39) missense possibly damaging 0.86
R7390:Sgsm3 UTSW 15 80,893,021 (GRCm39) missense possibly damaging 0.77
R7572:Sgsm3 UTSW 15 80,891,667 (GRCm39) missense possibly damaging 0.78
R7730:Sgsm3 UTSW 15 80,892,927 (GRCm39) missense probably damaging 1.00
R7851:Sgsm3 UTSW 15 80,894,954 (GRCm39) missense probably damaging 1.00
R8186:Sgsm3 UTSW 15 80,893,643 (GRCm39) missense possibly damaging 0.90
R8902:Sgsm3 UTSW 15 80,890,796 (GRCm39) missense probably damaging 1.00
R8949:Sgsm3 UTSW 15 80,894,612 (GRCm39) missense probably damaging 1.00
R9025:Sgsm3 UTSW 15 80,892,182 (GRCm39) missense probably damaging 1.00
R9664:Sgsm3 UTSW 15 80,890,935 (GRCm39) missense probably benign 0.00
R9774:Sgsm3 UTSW 15 80,890,673 (GRCm39) missense possibly damaging 0.94
Predicted Primers PCR Primer
(F):5'- CGCTCTGAGAAACTCCGTTC -3'
(R):5'- CACACTCCTGAGTAAAAGGGC -3'

Sequencing Primer
(F):5'- GAGAAACTCCGTTCCCTAGTG -3'
(R):5'- ACTCCTGAGTAAAAGGGCTACCTAC -3'
Posted On 2016-03-17