Mutagenetix > Incidental Mutation

Incidental Mutation 'R4900:Vmn2r92'

376121

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r92

Ensembl Gene

ENSMUSG00000091350

Gene Name

vomeronasal 2, receptor 92

Synonyms

EG627111

MMRRC Submission

042504-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.082) question?

Stock #

R4900 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

18372192-18405440 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 18404605 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 583 (D583G)

Ref Sequence

ENSEMBL: ENSMUSP00000128685 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000169686]

AlphaFold

L7N2A4

Predicted Effect

probably benign
Transcript: ENSMUST00000169686
AA Change: D583G

PolyPhen 2 Score 0.271 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000128685
Gene: ENSMUSG00000091350
AA Change: D583G

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
Pfam:ANF_receptor	83	463	4.7e-38	PFAM
Pfam:NCD3G	510	564	2.5e-19	PFAM
Pfam:7tm_3	597	832	1.1e-52	PFAM
low complexity region	843	855	N/A	INTRINSIC

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.5%
20x: 93.1%

Validation Efficiency

100% (84/84)

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930590J08Rik	T	C	6: 91,895,091 (GRCm39)	V262A	probably benign	Het
Abtb2	A	G	2: 103,397,349 (GRCm39)	E93G	possibly damaging	Het
Adam5	A	C	8: 25,232,172 (GRCm39)		probably null	Het
Adam5	G	A	8: 25,271,619 (GRCm39)	T596I	probably damaging	Het
Adgrb2	T	A	4: 129,907,668 (GRCm39)	Y1001N	probably damaging	Het
Aox1	T	G	1: 58,344,544 (GRCm39)	S546A	probably benign	Het
Asic2	T	C	11: 81,464,280 (GRCm39)		probably benign	Het
Bcl11b	T	A	12: 107,955,957 (GRCm39)	N64I	probably damaging	Het
Cacna1g	A	G	11: 94,350,177 (GRCm39)	F556S	possibly damaging	Het
Cbl	A	G	9: 44,064,166 (GRCm39)	V790A	probably benign	Het
Cd300c2	A	T	11: 114,891,807 (GRCm39)	C22*	probably null	Het
Cdh11	C	T	8: 103,374,090 (GRCm39)		probably null	Het
Ces2g	C	T	8: 105,693,989 (GRCm39)	Q442*	probably null	Het
Cps1	A	T	1: 67,200,063 (GRCm39)	T404S	probably damaging	Het
Csf2rb2	A	T	15: 78,170,174 (GRCm39)		probably null	Het
Csmd2	A	G	4: 128,346,318 (GRCm39)	Y1526C	probably benign	Het
Cyp2a12	C	T	7: 26,730,640 (GRCm39)	Q202*	probably null	Het
Cyp2c39	G	A	19: 39,502,020 (GRCm39)	M136I	probably benign	Het
Cyp2j13	G	A	4: 95,947,280 (GRCm39)	T257I	probably damaging	Het
Dnah8	T	A	17: 30,965,949 (GRCm39)	L2427Q	probably damaging	Het
Dop1b	G	T	16: 93,560,318 (GRCm39)		probably null	Het
Entrep1	A	G	19: 23,952,790 (GRCm39)	S507P	possibly damaging	Het
Epcam	T	C	17: 87,951,049 (GRCm39)	V212A	possibly damaging	Het
Flt1	C	A	5: 147,620,749 (GRCm39)	A132S	probably benign	Het
Flvcr2	T	A	12: 85,829,756 (GRCm39)	V255D	probably damaging	Het
Galc	G	T	12: 98,197,731 (GRCm39)	T326K	probably damaging	Het
Gas2l3	CACTCGTCATACT	CACT	10: 89,266,820 (GRCm39)		probably benign	Het
Gen1	A	T	12: 11,291,561 (GRCm39)	Y808N	probably benign	Het
Glis1	C	T	4: 107,476,761 (GRCm39)	A306V	probably damaging	Het
Gm10638	A	G	8: 87,473,028 (GRCm39)		probably benign	Het
Gm12789	G	A	4: 101,846,182 (GRCm39)		probably benign	Het
Gm27048	C	T	8: 81,661,228 (GRCm39)		noncoding transcript	Het
Gm4204	T	C	1: 135,160,556 (GRCm39)		noncoding transcript	Het
Gm904	A	T	13: 50,799,325 (GRCm39)	I95F	possibly damaging	Het
Gvin3	T	G	7: 106,197,793 (GRCm39)		noncoding transcript	Het
Hjurp	GT	GTT	1: 88,194,246 (GRCm39)		probably null	Het
Ints11	G	A	4: 155,972,887 (GRCm39)	D526N	probably benign	Het
Itfg2	A	G	6: 128,393,279 (GRCm39)		probably benign	Het
Jund	T	C	8: 71,152,254 (GRCm39)	V183A	probably damaging	Het
Kcnj8	A	G	6: 142,512,221 (GRCm39)	S129P	probably damaging	Het
Kcnq3	A	G	15: 65,867,259 (GRCm39)	S795P	probably damaging	Het
Lhx8	G	T	3: 154,035,925 (GRCm39)	A22E	probably benign	Het
Lrp8	A	G	4: 107,664,006 (GRCm39)		probably benign	Het
Lvrn	G	T	18: 47,026,768 (GRCm39)	A789S	probably damaging	Het
Lvrn	T	C	18: 47,014,479 (GRCm39)	S526P	probably damaging	Het
Mga	T	A	2: 119,794,535 (GRCm39)	C2622S	possibly damaging	Het
Mroh8	T	C	2: 157,070,647 (GRCm39)	E568G	probably benign	Het
Ms4a4b	C	A	19: 11,440,503 (GRCm39)		probably benign	Het
Muc2	T	C	7: 141,303,280 (GRCm39)	F99S	probably benign	Het
Myo5c	T	A	9: 75,180,825 (GRCm39)	I738N	probably damaging	Het
Naip6	A	C	13: 100,433,477 (GRCm39)	V1120G	probably damaging	Het
Ncl	T	C	1: 86,283,901 (GRCm39)	T307A	probably benign	Het
Npr1	A	T	3: 90,363,272 (GRCm39)	D869E	possibly damaging	Het
Nup93	A	G	8: 95,013,231 (GRCm39)	T36A	probably benign	Het
Olfml2b	C	A	1: 170,489,947 (GRCm39)	T189N	probably damaging	Het
Or4c12b	A	G	2: 89,647,312 (GRCm39)	N208S	possibly damaging	Het
Or8b9	T	C	9: 37,766,608 (GRCm39)	F165L	probably benign	Het
P4htm	A	C	9: 108,456,427 (GRCm39)	W458G	probably damaging	Het
Pdzrn4	G	T	15: 92,668,638 (GRCm39)	R930L	probably damaging	Het
Pgam5	G	A	5: 110,408,301 (GRCm39)	A240V	probably damaging	Het
Prex2	T	C	1: 11,220,129 (GRCm39)		probably benign	Het
Ptpru	T	G	4: 131,515,693 (GRCm39)	E897A	probably damaging	Het
Rapgef2	A	T	3: 78,981,670 (GRCm39)	N1256K	probably benign	Het
Rhbdl3	A	G	11: 80,210,439 (GRCm39)	E64G	probably benign	Het
Sel1l3	A	T	5: 53,289,184 (GRCm39)	L879Q	probably damaging	Het
Siah1a	G	T	8: 87,451,703 (GRCm39)	D260E	probably benign	Het
Skint6	T	C	4: 112,924,667 (GRCm39)	I522V	probably benign	Het
Slco4c1	G	A	1: 96,768,953 (GRCm39)	P303L	probably damaging	Het
Smok3c	T	C	5: 138,062,813 (GRCm39)	I100T	probably damaging	Het
Snx24	C	A	18: 53,518,295 (GRCm39)	Y141*	probably null	Het
Tigit	A	G	16: 43,469,594 (GRCm39)	S166P	probably damaging	Het
Tmem183a	C	T	1: 134,275,904 (GRCm39)	R324Q	probably benign	Het
Tmie	T	C	9: 110,696,001 (GRCm39)	D130G	possibly damaging	Het
Uggt1	G	A	1: 36,241,936 (GRCm39)	R333*	probably null	Het
Vmn2r111	T	C	17: 22,767,637 (GRCm39)	N620S	possibly damaging	Het
Vmn2r12	T	A	5: 109,240,852 (GRCm39)	N87I	probably damaging	Het
Zdhhc17	T	C	10: 110,821,819 (GRCm39)	D60G	possibly damaging	Het

Other mutations in Vmn2r92

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01591:Vmn2r92	APN	17	18,405,423 (GRCm39)	missense	unknown
IGL01758:Vmn2r92	APN	17	18,372,275 (GRCm39)	nonsense	probably null
IGL02614:Vmn2r92	APN	17	18,387,503 (GRCm39)	splice site	probably benign
IGL03095:Vmn2r92	APN	17	18,386,972 (GRCm39)	missense	possibly damaging	0.55
IGL03403:Vmn2r92	APN	17	18,387,114 (GRCm39)	missense	probably damaging	0.98
R0133:Vmn2r92	UTSW	17	18,388,219 (GRCm39)	missense	probably damaging	1.00
R0225:Vmn2r92	UTSW	17	18,388,219 (GRCm39)	missense	probably damaging	1.00
R0227:Vmn2r92	UTSW	17	18,388,219 (GRCm39)	missense	probably damaging	1.00
R0265:Vmn2r92	UTSW	17	18,388,219 (GRCm39)	missense	probably damaging	1.00
R0266:Vmn2r92	UTSW	17	18,388,219 (GRCm39)	missense	probably damaging	1.00
R0267:Vmn2r92	UTSW	17	18,388,219 (GRCm39)	missense	probably damaging	1.00
R0420:Vmn2r92	UTSW	17	18,389,183 (GRCm39)	missense	probably benign	0.01
R0426:Vmn2r92	UTSW	17	18,388,219 (GRCm39)	missense	probably damaging	1.00
R0494:Vmn2r92	UTSW	17	18,388,219 (GRCm39)	missense	probably damaging	1.00
R1253:Vmn2r92	UTSW	17	18,387,028 (GRCm39)	missense	probably benign	0.08
R1497:Vmn2r92	UTSW	17	18,387,625 (GRCm39)	missense	probably benign	0.02
R1571:Vmn2r92	UTSW	17	18,372,352 (GRCm39)	missense	probably damaging	0.96
R1656:Vmn2r92	UTSW	17	18,372,198 (GRCm39)	missense	probably benign
R1816:Vmn2r92	UTSW	17	18,386,939 (GRCm39)	missense	probably damaging	0.98
R2229:Vmn2r92	UTSW	17	18,387,654 (GRCm39)	missense	probably benign	0.01
R2909:Vmn2r92	UTSW	17	18,405,377 (GRCm39)	missense	possibly damaging	0.89
R3694:Vmn2r92	UTSW	17	18,372,205 (GRCm39)	nonsense	probably null
R4207:Vmn2r92	UTSW	17	18,404,523 (GRCm39)	missense	possibly damaging	0.62
R4548:Vmn2r92	UTSW	17	18,391,578 (GRCm39)	missense	probably benign
R4612:Vmn2r92	UTSW	17	18,387,132 (GRCm39)	missense	probably benign	0.25
R4742:Vmn2r92	UTSW	17	18,387,119 (GRCm39)	missense	probably benign	0.06
R4824:Vmn2r92	UTSW	17	18,372,183 (GRCm39)	utr 5 prime	probably benign
R4865:Vmn2r92	UTSW	17	18,387,634 (GRCm39)	missense	probably benign	0.16
R5084:Vmn2r92	UTSW	17	18,405,439 (GRCm39)	makesense	probably null
R5140:Vmn2r92	UTSW	17	18,372,312 (GRCm39)	missense	probably benign	0.07
R5995:Vmn2r92	UTSW	17	18,389,213 (GRCm39)	critical splice donor site	probably null
R6045:Vmn2r92	UTSW	17	18,388,305 (GRCm39)	critical splice donor site	probably null
R6269:Vmn2r92	UTSW	17	18,387,036 (GRCm39)	missense	probably benign	0.01
R6877:Vmn2r92	UTSW	17	18,389,084 (GRCm39)	missense	probably damaging	1.00
R7151:Vmn2r92	UTSW	17	18,387,005 (GRCm39)	missense	probably benign	0.01
R7260:Vmn2r92	UTSW	17	18,387,138 (GRCm39)	missense	probably damaging	1.00
R7344:Vmn2r92	UTSW	17	18,387,513 (GRCm39)	missense	probably benign	0.01
R7514:Vmn2r92	UTSW	17	18,391,533 (GRCm39)	missense	probably damaging	1.00
R7576:Vmn2r92	UTSW	17	18,387,621 (GRCm39)	missense	probably benign	0.01
R7584:Vmn2r92	UTSW	17	18,387,028 (GRCm39)	missense	probably benign	0.08
R7912:Vmn2r92	UTSW	17	18,404,970 (GRCm39)	missense	possibly damaging	0.91
R7941:Vmn2r92	UTSW	17	18,405,099 (GRCm39)	missense	possibly damaging	0.89
R8178:Vmn2r92	UTSW	17	18,386,988 (GRCm39)	missense	possibly damaging	0.69
R8238:Vmn2r92	UTSW	17	18,405,278 (GRCm39)	missense	probably benign	0.00
R8239:Vmn2r92	UTSW	17	18,405,278 (GRCm39)	missense	probably benign	0.00
R8252:Vmn2r92	UTSW	17	18,387,134 (GRCm39)	missense	probably damaging	1.00
R8322:Vmn2r92	UTSW	17	18,386,886 (GRCm39)	missense	probably damaging	0.99
R8355:Vmn2r92	UTSW	17	18,405,061 (GRCm39)	missense	probably damaging	0.99
R9399:Vmn2r92	UTSW	17	18,389,137 (GRCm39)	missense	probably benign	0.29
R9639:Vmn2r92	UTSW	17	18,372,352 (GRCm39)	missense	probably damaging	0.96
R9747:Vmn2r92	UTSW	17	18,405,201 (GRCm39)	missense	possibly damaging	0.66
R9773:Vmn2r92	UTSW	17	18,386,949 (GRCm39)	missense	probably damaging	1.00
X0066:Vmn2r92	UTSW	17	18,405,157 (GRCm39)	missense	probably damaging	1.00
Z1177:Vmn2r92	UTSW	17	18,404,795 (GRCm39)	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- GCCATGACTTCTGAGATAGTCC -3'
(R):5'- GCAAAGGTGGTCTGCTGAAG -3'

Sequencing Primer
(F):5'- ACTTCTGAGATAGTCCCTGTAATTAG -3'
(R):5'- GCTGACCAATGAAGTTCAAAGAAC -3'

Posted On

2016-03-17