Incidental Mutation 'R4919:Spata7'
| ID |
378485 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Spata7
|
| Ensembl Gene |
ENSMUSG00000021007 |
| Gene Name |
spermatogenesis associated 7 |
| Synonyms |
B230306G18Rik, HSD3 |
| MMRRC Submission |
042521-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.158)
|
| Stock # |
R4919 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
12 |
| Chromosomal Location |
98594416-98636074 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 98614712 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Proline
at position 115
(S115P)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000098704
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000048402]
[ENSMUST00000101144]
[ENSMUST00000101146]
|
| AlphaFold |
Q80VP2 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000048402
AA Change: S115P
PolyPhen 2
Score 0.030 (Sensitivity: 0.95; Specificity: 0.82)
|
| SMART Domains |
Protein: ENSMUSP00000045827
Gene: ENSMUSG00000021007
AA Change: S115P
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:HSD3
|
9 |
410 |
1e-190 |
PFAM |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000101144
AA Change: S115P
PolyPhen 2
Score 0.653 (Sensitivity: 0.87; Specificity: 0.91)
|
| SMART Domains |
Protein: ENSMUSP00000098704
Gene: ENSMUSG00000021007
AA Change: S115P
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:HSD3
|
6 |
131 |
7.5e-73 |
PFAM |
|
Pfam:HSD3
|
122 |
244 |
6e-63 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000101146
AA Change: S83P
PolyPhen 2
Score 0.039 (Sensitivity: 0.94; Specificity: 0.83)
|
| SMART Domains |
Protein: ENSMUSP00000098705
Gene: ENSMUSG00000021007
AA Change: S83P
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:HSD3
|
6 |
33 |
1e-11 |
PFAM |
|
Pfam:HSD3
|
31 |
379 |
2.1e-171 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000221455
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000221845
|
| Meta Mutation Damage Score |
0.1117 |
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.3%
- 10x: 96.1%
- 20x: 91.9%
|
| Validation Efficiency |
100% (46/46) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene, originally isolated from testis, is also expressed in retina. Mutations in this gene are associated with Leber congenital amaurosis and juvenile retinitis pigmentosa. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2010]
PHENOTYPE: Mice homozygous for a null allele display progressive retinal rod cell degeneration, a thin retinal outer nuclear layer and impaired scotopic responses. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2700049A03Rik |
G |
T |
12: 71,211,320 (GRCm39) |
E685* |
probably null |
Het |
| 2700049A03Rik |
A |
T |
12: 71,211,321 (GRCm39) |
E685V |
possibly damaging |
Het |
| 3425401B19Rik |
T |
C |
14: 32,385,245 (GRCm39) |
D240G |
possibly damaging |
Het |
| Aplf |
T |
C |
6: 87,607,046 (GRCm39) |
D456G |
possibly damaging |
Het |
| Brd8 |
A |
G |
18: 34,740,489 (GRCm39) |
F445S |
probably damaging |
Het |
| Coro1b |
C |
T |
19: 4,200,709 (GRCm39) |
R214C |
possibly damaging |
Het |
| Dop1a |
T |
A |
9: 86,402,109 (GRCm39) |
I1101K |
possibly damaging |
Het |
| Enpp1 |
A |
G |
10: 24,523,983 (GRCm39) |
V728A |
probably benign |
Het |
| Gosr1 |
T |
A |
11: 76,625,392 (GRCm39) |
|
probably null |
Het |
| Grhl3 |
T |
A |
4: 135,286,415 (GRCm39) |
K89* |
probably null |
Het |
| Ino80 |
T |
A |
2: 119,273,073 (GRCm39) |
T468S |
probably damaging |
Het |
| Kcnab2 |
T |
C |
4: 152,486,397 (GRCm39) |
K134E |
probably damaging |
Het |
| Klhl17 |
C |
T |
4: 156,318,344 (GRCm39) |
V93I |
possibly damaging |
Het |
| Kmt2c |
G |
T |
5: 25,519,393 (GRCm39) |
P2239Q |
possibly damaging |
Het |
| Lnpep |
A |
G |
17: 17,799,173 (GRCm39) |
F161L |
probably damaging |
Het |
| Lrp1b |
T |
A |
2: 40,537,246 (GRCm39) |
I14F |
probably benign |
Het |
| Mbtd1 |
T |
A |
11: 93,813,974 (GRCm39) |
|
probably null |
Het |
| Musk |
A |
C |
4: 58,366,899 (GRCm39) |
I506L |
probably damaging |
Het |
| Mydgf |
C |
T |
17: 56,483,953 (GRCm39) |
V158I |
probably damaging |
Het |
| Ncapd3 |
C |
T |
9: 26,963,071 (GRCm39) |
P459S |
possibly damaging |
Het |
| Ofcc1 |
G |
A |
13: 40,168,864 (GRCm39) |
T841I |
probably damaging |
Het |
| Or13a19 |
A |
T |
7: 139,903,427 (GRCm39) |
K272* |
probably null |
Het |
| Or2w6 |
A |
T |
13: 21,842,794 (GRCm39) |
I233N |
possibly damaging |
Het |
| Or5d45 |
A |
G |
2: 88,153,992 (GRCm39) |
V19A |
probably benign |
Het |
| Pnmt |
T |
A |
11: 98,277,477 (GRCm39) |
L7Q |
probably benign |
Het |
| Rerg |
T |
C |
6: 137,033,142 (GRCm39) |
I197V |
probably damaging |
Het |
| Sgo2a |
T |
C |
1: 58,037,293 (GRCm39) |
S13P |
probably damaging |
Het |
| Sim2 |
T |
C |
16: 93,910,194 (GRCm39) |
S199P |
probably benign |
Het |
| Smc1b |
T |
C |
15: 85,001,305 (GRCm39) |
|
probably benign |
Het |
| Ssh2 |
A |
G |
11: 77,316,146 (GRCm39) |
T250A |
possibly damaging |
Het |
| Sv2a |
A |
G |
3: 96,098,071 (GRCm39) |
N558S |
probably benign |
Het |
| Tia1 |
T |
A |
6: 86,401,305 (GRCm39) |
|
probably benign |
Het |
| Tmem39a |
A |
G |
16: 38,405,561 (GRCm39) |
Y46C |
probably benign |
Het |
| Vmn2r2 |
A |
G |
3: 64,024,578 (GRCm39) |
S668P |
possibly damaging |
Het |
| Vwa1 |
C |
A |
4: 155,855,057 (GRCm39) |
A326S |
probably benign |
Het |
| Xpo6 |
A |
G |
7: 125,752,115 (GRCm39) |
M327T |
probably benign |
Het |
|
| Other mutations in Spata7 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00535:Spata7
|
APN |
12 |
98,635,099 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02283:Spata7
|
APN |
12 |
98,624,517 (GRCm39) |
missense |
probably damaging |
0.96 |
|
IGL02379:Spata7
|
APN |
12 |
98,600,519 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0200:Spata7
|
UTSW |
12 |
98,629,428 (GRCm39) |
missense |
probably benign |
0.32 |
|
R0422:Spata7
|
UTSW |
12 |
98,624,524 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0847:Spata7
|
UTSW |
12 |
98,614,689 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R1228:Spata7
|
UTSW |
12 |
98,600,528 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1497:Spata7
|
UTSW |
12 |
98,635,120 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1693:Spata7
|
UTSW |
12 |
98,630,516 (GRCm39) |
missense |
possibly damaging |
0.85 |
|
R2183:Spata7
|
UTSW |
12 |
98,603,871 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2507:Spata7
|
UTSW |
12 |
98,624,709 (GRCm39) |
missense |
probably benign |
|
|
R3176:Spata7
|
UTSW |
12 |
98,603,857 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R3177:Spata7
|
UTSW |
12 |
98,603,857 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R3276:Spata7
|
UTSW |
12 |
98,603,857 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R3277:Spata7
|
UTSW |
12 |
98,603,857 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R3951:Spata7
|
UTSW |
12 |
98,635,732 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R4698:Spata7
|
UTSW |
12 |
98,630,536 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5088:Spata7
|
UTSW |
12 |
98,635,761 (GRCm39) |
missense |
probably benign |
0.43 |
|
R5583:Spata7
|
UTSW |
12 |
98,635,590 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R6414:Spata7
|
UTSW |
12 |
98,629,479 (GRCm39) |
critical splice donor site |
probably null |
|
|
R6451:Spata7
|
UTSW |
12 |
98,624,596 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7167:Spata7
|
UTSW |
12 |
98,630,555 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7316:Spata7
|
UTSW |
12 |
98,624,871 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8731:Spata7
|
UTSW |
12 |
98,624,541 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8778:Spata7
|
UTSW |
12 |
98,624,815 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9173:Spata7
|
UTSW |
12 |
98,603,853 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9379:Spata7
|
UTSW |
12 |
98,600,548 (GRCm39) |
missense |
probably benign |
|
|
R9572:Spata7
|
UTSW |
12 |
98,614,655 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9597:Spata7
|
UTSW |
12 |
98,600,559 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- ACAGCTTCTAGAACAGCCTGG -3'
(R):5'- GCAGTTGTGACAAGGTGCTG -3'
Sequencing Primer
(F):5'- CTGGGCGAAGGGAGAAATCATTG -3'
(R):5'- CTGTGTCCTGAAGAGCACACATG -3'
|
| Posted On |
2016-04-15 |
Incidental Mutation