Mutagenetix > Incidental Mutation

Incidental Mutation 'R4923:Cobll1'

378743

Institutional Source

Beutler Lab

Gene Symbol

Cobll1

Ensembl Gene

ENSMUSG00000034903

Gene Name

Cobl-like 1

Synonyms

Coblr1, D430044D16Rik

MMRRC Submission

042525-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.284) question?

Stock #

R4923 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

64918683-65069742 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 64929602 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 575 (S575P)

Ref Sequence

ENSEMBL: ENSMUSP00000088412 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000090896] [ENSMUST00000102726] [ENSMUST00000112429] [ENSMUST00000112430] [ENSMUST00000112431]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000090896
AA Change: S575P

PolyPhen 2 Score 0.871 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000088412
Gene: ENSMUSG00000034903
AA Change: S575P

Domain	Start	End	E-Value	Type
low complexity region	147	158	N/A	INTRINSIC
Pfam:Cobl	186	264	1.3e-38	PFAM
low complexity region	332	343	N/A	INTRINSIC
low complexity region	426	438	N/A	INTRINSIC
low complexity region	1023	1034	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000102726
AA Change: S612P

PolyPhen 2 Score 0.321 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000099787
Gene: ENSMUSG00000034903
AA Change: S612P

Domain	Start	End	E-Value	Type
low complexity region	147	158	N/A	INTRINSIC
Pfam:Cobl	186	264	5.6e-39	PFAM
low complexity region	332	343	N/A	INTRINSIC
low complexity region	464	476	N/A	INTRINSIC
low complexity region	1060	1071	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000112429
AA Change: S613P

PolyPhen 2 Score 0.796 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000108048
Gene: ENSMUSG00000034903
AA Change: S613P

Domain	Start	End	E-Value	Type
Pfam:Cobl	148	239	5.4e-49	PFAM
low complexity region	332	343	N/A	INTRINSIC
low complexity region	464	476	N/A	INTRINSIC
low complexity region	1061	1072	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000112430
AA Change: S574P

PolyPhen 2 Score 0.060 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000108049
Gene: ENSMUSG00000034903
AA Change: S574P

Domain	Start	End	E-Value	Type
low complexity region	146	157	N/A	INTRINSIC
Pfam:Cobl	185	263	1.3e-38	PFAM
low complexity region	331	342	N/A	INTRINSIC
low complexity region	425	437	N/A	INTRINSIC
low complexity region	1022	1033	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000112431
AA Change: S613P

PolyPhen 2 Score 0.796 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000108050
Gene: ENSMUSG00000034903
AA Change: S613P

Domain	Start	End	E-Value	Type
low complexity region	147	158	N/A	INTRINSIC
Pfam:Cobl	186	264	5.6e-39	PFAM
low complexity region	332	343	N/A	INTRINSIC
low complexity region	464	476	N/A	INTRINSIC
low complexity region	1061	1072	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155768

Meta Mutation Damage Score

0.0833

Coding Region Coverage

1x: 99.0%
3x: 98.2%
10x: 96.0%
20x: 91.3%

Validation Efficiency

98% (107/109)

Allele List at MGI

Other mutations in this stock

Total: 95 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aim2	A	G	1: 173,287,372 (GRCm39)	D124G	probably benign	Het
Akr1c6	T	C	13: 4,504,494 (GRCm39)	M293T	probably damaging	Het
Albfm1	A	G	5: 90,709,158 (GRCm39)	T23A	probably benign	Het
Ankhd1	A	G	18: 36,722,505 (GRCm39)	T343A	probably damaging	Het
Ano2	T	C	6: 125,880,018 (GRCm39)		probably benign	Het
Arfgap2	G	A	2: 91,104,004 (GRCm39)	G353R	probably damaging	Het
Armc3	A	G	2: 19,297,791 (GRCm39)		probably null	Het
Atp11b	T	C	3: 35,889,528 (GRCm39)		probably null	Het
Brd4	A	G	17: 32,418,214 (GRCm39)	M13T	probably benign	Het
Btd	T	A	14: 31,384,044 (GRCm39)	M10K	possibly damaging	Het
C1s2	T	C	6: 124,602,649 (GRCm39)	K515E	probably benign	Het
Cars1	A	T	7: 143,123,587 (GRCm39)	Y455N	probably damaging	Het
Ccdc110	A	G	8: 46,396,460 (GRCm39)	S784G	probably benign	Het
Chic2	A	G	5: 75,171,872 (GRCm39)		probably benign	Het
Chka	A	T	19: 3,942,105 (GRCm39)		probably null	Het
Chrne	A	G	11: 70,506,101 (GRCm39)	I420T	possibly damaging	Het
Clstn1	T	C	4: 149,729,486 (GRCm39)	V747A	probably benign	Het
Col6a6	A	T	9: 105,666,147 (GRCm39)	L3Q	probably damaging	Het
Comtd1	A	T	14: 21,898,813 (GRCm39)		probably benign	Het
Cpsf2	T	C	12: 101,948,243 (GRCm39)	V13A	probably benign	Het
Creb3l4	T	A	3: 90,149,521 (GRCm39)	I115L	probably benign	Het
Cyp2j12	C	T	4: 95,990,346 (GRCm39)	A407T	possibly damaging	Het
Ddr2	A	G	1: 169,825,498 (GRCm39)		probably null	Het
Dennd4c	T	C	4: 86,725,775 (GRCm39)	L743P	probably damaging	Het
Egfl8	T	C	17: 34,833,171 (GRCm39)	T192A	probably benign	Het
Elapor1	C	T	3: 108,379,284 (GRCm39)		probably null	Het
Elf3	A	G	1: 135,184,473 (GRCm39)		probably benign	Het
Entrep2	A	G	7: 64,417,439 (GRCm39)	S322P	probably benign	Het
Etv3	T	G	3: 87,443,223 (GRCm39)	L269R	possibly damaging	Het
Fah	C	A	7: 84,251,260 (GRCm39)		probably benign	Het
Fbll1	C	A	11: 35,688,407 (GRCm39)	L285F	probably benign	Het
Fcrla	A	T	1: 170,748,682 (GRCm39)	F154I	probably damaging	Het
Fnip2	T	A	3: 79,396,701 (GRCm39)		probably null	Het
Focad	T	C	4: 88,115,083 (GRCm39)		probably benign	Het
Gabrr1	T	A	4: 33,162,820 (GRCm39)	I462N	possibly damaging	Het
Gm57859	C	A	11: 113,579,805 (GRCm39)	T400K	probably benign	Het
Gnptab	A	G	10: 88,265,485 (GRCm39)	T366A	probably benign	Het
Hnrnpu	G	A	1: 178,159,017 (GRCm39)		probably benign	Het
Il17ra	T	A	6: 120,454,406 (GRCm39)	V299E	possibly damaging	Het
Impg1	G	A	9: 80,252,360 (GRCm39)	Q607*	probably null	Het
Impg1	T	A	9: 80,252,827 (GRCm39)	E374V	probably damaging	Het
Itgax	C	T	7: 127,747,700 (GRCm39)	L1039F	probably benign	Het
Kcnk2	A	T	1: 189,072,133 (GRCm39)	V65D	probably damaging	Het
Kif20b	A	C	19: 34,918,611 (GRCm39)		probably null	Het
Krt9	TCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCC	TCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCCCCCACTTCCTCCTCCATAGCTGCC	11: 100,079,903 (GRCm39)		probably benign	Het
Lama5	T	G	2: 179,825,942 (GRCm39)	I2372L	probably benign	Het
Lilrb4a	A	G	10: 51,368,139 (GRCm39)	T85A	possibly damaging	Het
Mapk13	C	A	17: 28,997,197 (GRCm39)	H330N	probably benign	Het
Mars1	C	A	10: 127,132,549 (GRCm39)		probably benign	Het
Mdga1	C	A	17: 30,057,052 (GRCm39)	R818L	probably damaging	Het
Mdn1	T	A	4: 32,671,608 (GRCm39)	L476Q	possibly damaging	Het
Mup21	T	C	4: 62,066,202 (GRCm39)	E178G	probably benign	Het
Myg1	A	G	15: 102,240,288 (GRCm39)	N38S	probably benign	Het
Ncam1	A	T	9: 49,416,779 (GRCm39)	D837E	probably benign	Het
Ncam2	C	T	16: 81,386,679 (GRCm39)	P686L	possibly damaging	Het
Nck2	T	C	1: 43,500,231 (GRCm39)		probably benign	Het
Nfya	T	C	17: 48,707,563 (GRCm39)		probably benign	Het
Npat	A	G	9: 53,482,330 (GRCm39)	K1346R	probably damaging	Het
Odad2	C	G	18: 7,181,787 (GRCm39)	D846H	probably damaging	Het
Or12j3	G	T	7: 139,952,920 (GRCm39)	T201K	probably benign	Het
Or4a72	T	C	2: 89,406,023 (GRCm39)	T16A	probably damaging	Het
Or6c212	A	G	10: 129,558,681 (GRCm39)	V244A	probably benign	Het
Pde7b	G	T	10: 20,288,873 (GRCm39)	Q325K	probably damaging	Het
Pla2r1	A	T	2: 60,253,056 (GRCm39)	M1345K	probably benign	Het
Prkcz	T	C	4: 155,441,946 (GRCm39)	D62G	probably damaging	Het
Pros1	T	A	16: 62,723,935 (GRCm39)	C228S	possibly damaging	Het
Ptprc	A	G	1: 138,006,236 (GRCm39)	M782T	possibly damaging	Het
Rcn1	T	C	2: 105,219,518 (GRCm39)	D225G	probably benign	Het
Recql4	G	A	15: 76,594,381 (GRCm39)	R46C	probably damaging	Het
Rnf220	C	T	4: 117,346,797 (GRCm39)	R205Q	possibly damaging	Het
Samd13	T	C	3: 146,368,502 (GRCm39)	D11G	probably benign	Het
Scp2d1	T	A	2: 144,666,030 (GRCm39)	I123K	probably benign	Het
Skap1	A	T	11: 96,644,870 (GRCm39)	Y311F	probably damaging	Het
Slc2a10	T	C	2: 165,356,676 (GRCm39)	I112T	possibly damaging	Het
Slc34a1	G	A	13: 24,003,078 (GRCm39)	V243M	probably benign	Het
Slc39a2	G	A	14: 52,132,711 (GRCm39)	G218D	probably damaging	Het
Sos1	T	C	17: 80,742,381 (GRCm39)	N382S	probably benign	Het
Spam1	C	T	6: 24,796,655 (GRCm39)	T202I	probably damaging	Het
Tas2r138	T	A	6: 40,589,820 (GRCm39)	Q142L	possibly damaging	Het
Tec	T	A	5: 72,939,365 (GRCm39)	R217*	probably null	Het
Tmeff2	T	A	1: 50,969,804 (GRCm39)	V90D	probably benign	Het
Tmem119	T	C	5: 113,933,405 (GRCm39)	Y132C	probably damaging	Het
Topbp1	A	G	9: 103,190,035 (GRCm39)	I204V	probably benign	Het
Trappc14	A	T	5: 138,260,641 (GRCm39)		probably benign	Het
Ttn	A	T	2: 76,601,232 (GRCm39)	I17001N	probably damaging	Het
Vit	T	A	17: 78,894,270 (GRCm39)	M224K	probably benign	Het
Vmn1r179	T	G	7: 23,628,491 (GRCm39)	H227Q	possibly damaging	Het
Vmn1r84	T	C	7: 12,095,743 (GRCm39)	N305D	probably benign	Het
Vmn2r61	A	G	7: 41,916,520 (GRCm39)	N378D	probably damaging	Het
Vmn2r87	A	G	10: 130,314,435 (GRCm39)	Y384H	probably damaging	Het
Wiz	C	T	17: 32,580,570 (GRCm39)	A294T	probably benign	Het
Xdh	C	A	17: 74,231,931 (GRCm39)	V260L	possibly damaging	Het
Xirp2	A	G	2: 67,343,237 (GRCm39)	K1826R	probably benign	Het
Zfp445	A	C	9: 122,681,358 (GRCm39)	I861R	probably benign	Het
Zfp691	T	C	4: 119,027,999 (GRCm39)	T78A	probably benign	Het

Other mutations in Cobll1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00789:Cobll1	APN	2	64,956,357 (GRCm39)	missense	probably damaging	1.00
IGL01074:Cobll1	APN	2	64,938,192 (GRCm39)	missense	probably damaging	1.00
IGL01093:Cobll1	APN	2	64,928,581 (GRCm39)	missense	probably damaging	1.00
IGL02411:Cobll1	APN	2	64,928,084 (GRCm39)	missense	probably damaging	1.00
IGL02419:Cobll1	APN	2	64,981,392 (GRCm39)	missense	probably damaging	1.00
IGL02550:Cobll1	APN	2	64,938,207 (GRCm39)	missense	probably damaging	1.00
IGL02607:Cobll1	APN	2	64,981,429 (GRCm39)	missense	probably damaging	0.98
IGL02829:Cobll1	APN	2	64,956,389 (GRCm39)	missense	probably damaging	1.00
IGL02802:Cobll1	UTSW	2	64,928,663 (GRCm39)	missense	probably damaging	0.99
R0313:Cobll1	UTSW	2	64,926,088 (GRCm39)	nonsense	probably null
R0314:Cobll1	UTSW	2	64,919,865 (GRCm39)	missense	possibly damaging	0.81
R0322:Cobll1	UTSW	2	64,932,442 (GRCm39)	missense	possibly damaging	0.84
R0846:Cobll1	UTSW	2	64,932,409 (GRCm39)	splice site	probably null
R1163:Cobll1	UTSW	2	64,928,623 (GRCm39)	missense	probably damaging	0.96
R1242:Cobll1	UTSW	2	64,981,513 (GRCm39)	critical splice acceptor site	probably null
R1364:Cobll1	UTSW	2	64,956,654 (GRCm39)	splice site	probably benign
R1445:Cobll1	UTSW	2	64,929,480 (GRCm39)	missense	probably damaging	1.00
R1610:Cobll1	UTSW	2	64,963,986 (GRCm39)	missense	probably damaging	1.00
R1836:Cobll1	UTSW	2	64,956,580 (GRCm39)	missense	probably damaging	1.00
R2102:Cobll1	UTSW	2	64,928,554 (GRCm39)	missense	probably damaging	1.00
R3154:Cobll1	UTSW	2	64,937,394 (GRCm39)	missense	probably benign	0.00
R4580:Cobll1	UTSW	2	64,981,417 (GRCm39)	missense	probably benign	0.00
R4638:Cobll1	UTSW	2	64,929,581 (GRCm39)	missense	probably benign	0.03
R4684:Cobll1	UTSW	2	64,929,372 (GRCm39)	missense	possibly damaging	0.90
R4906:Cobll1	UTSW	2	64,928,037 (GRCm39)	missense	probably benign	0.01
R5100:Cobll1	UTSW	2	64,956,245 (GRCm39)	missense	probably benign	0.26
R5269:Cobll1	UTSW	2	64,964,115 (GRCm39)	nonsense	probably null
R5419:Cobll1	UTSW	2	64,933,701 (GRCm39)	missense	possibly damaging	0.57
R5637:Cobll1	UTSW	2	64,956,247 (GRCm39)	missense	possibly damaging	0.90
R5745:Cobll1	UTSW	2	64,928,801 (GRCm39)	missense	probably damaging	0.99
R5777:Cobll1	UTSW	2	64,933,612 (GRCm39)	missense	probably benign	0.27
R6303:Cobll1	UTSW	2	64,928,377 (GRCm39)	missense	possibly damaging	0.68
R6471:Cobll1	UTSW	2	64,938,228 (GRCm39)	missense	probably damaging	1.00
R7027:Cobll1	UTSW	2	64,919,847 (GRCm39)	missense	probably benign	0.00
R7132:Cobll1	UTSW	2	64,964,112 (GRCm39)	missense	probably damaging	1.00
R7197:Cobll1	UTSW	2	64,928,882 (GRCm39)	missense	probably benign	0.00
R7365:Cobll1	UTSW	2	64,928,717 (GRCm39)	missense	probably damaging	0.99
R7607:Cobll1	UTSW	2	64,926,201 (GRCm39)	missense	probably benign	0.02
R7899:Cobll1	UTSW	2	64,956,275 (GRCm39)	missense	probably damaging	1.00
R7996:Cobll1	UTSW	2	64,981,329 (GRCm39)	missense	possibly damaging	0.93
R8175:Cobll1	UTSW	2	64,929,575 (GRCm39)	missense	probably benign
R8212:Cobll1	UTSW	2	64,932,424 (GRCm39)	missense	probably benign	0.08
R8549:Cobll1	UTSW	2	64,928,794 (GRCm39)	missense	probably damaging	1.00
R8832:Cobll1	UTSW	2	64,929,602 (GRCm39)	missense	probably damaging	1.00
R9189:Cobll1	UTSW	2	64,981,333 (GRCm39)	missense	probably damaging	1.00
R9253:Cobll1	UTSW	2	64,981,503 (GRCm39)	missense	probably benign	0.10
R9273:Cobll1	UTSW	2	64,929,356 (GRCm39)	missense	probably damaging	1.00
R9309:Cobll1	UTSW	2	64,956,271 (GRCm39)	missense	probably damaging	0.96
R9332:Cobll1	UTSW	2	64,933,516 (GRCm39)	missense	probably benign
R9469:Cobll1	UTSW	2	64,966,774 (GRCm39)	missense	probably damaging	1.00
X0020:Cobll1	UTSW	2	64,933,666 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GATTCCCATCAAAAGTGCCGC -3'
(R):5'- GTGGATTGTAGCACTCAAATTATCCAG -3'

Sequencing Primer
(F):5'- GGCGATGCTGTTAGATGAT -3'
(R):5'- TCATGGTCTGTGCCACAA -3'

Posted On

2016-04-15