Incidental Mutation 'R4936:Vmn2r93'
| ID |
380410 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Vmn2r93
|
| Ensembl Gene |
ENSMUSG00000079698 |
| Gene Name |
vomeronasal 2, receptor 93 |
| Synonyms |
EG627132 |
| MMRRC Submission |
042536-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.084)
|
| Stock # |
R4936 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
17 |
| Chromosomal Location |
18518543-18546703 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to T
at 18524327 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Aspartic acid to Valine
at position 107
(D107V)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000155900
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000079206]
[ENSMUST00000231879]
[ENSMUST00000231938]
|
| AlphaFold |
L7N1Z9 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000079206
AA Change: D107V
PolyPhen 2
Score 0.664 (Sensitivity: 0.86; Specificity: 0.91)
|
| SMART Domains |
Protein: ENSMUSP00000078200
Gene: ENSMUSG00000079698
AA Change: D107V
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
19 |
N/A |
INTRINSIC |
|
Pfam:ANF_receptor
|
82 |
453 |
5.9e-40 |
PFAM |
|
Pfam:NCD3G
|
509 |
562 |
2.6e-21 |
PFAM |
|
Pfam:7tm_3
|
594 |
830 |
1.5e-50 |
PFAM |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000231879
AA Change: D107V
PolyPhen 2
Score 0.821 (Sensitivity: 0.84; Specificity: 0.93)
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000231938
AA Change: D107V
PolyPhen 2
Score 0.953 (Sensitivity: 0.79; Specificity: 0.95)
|
| Coding Region Coverage |
- 1x: 98.9%
- 3x: 98.0%
- 10x: 95.0%
- 20x: 87.5%
|
| Validation Efficiency |
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 84 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2300002M23Rik |
T |
A |
17: 35,879,212 (GRCm39) |
F183L |
possibly damaging |
Het |
| 4930590J08Rik |
T |
A |
6: 91,921,245 (GRCm39) |
M775K |
probably damaging |
Het |
| Actn1 |
T |
G |
12: 80,219,772 (GRCm39) |
I700L |
probably benign |
Het |
| Adam5 |
T |
C |
8: 25,276,287 (GRCm39) |
Y460C |
probably damaging |
Het |
| Akna |
C |
T |
4: 63,313,502 (GRCm39) |
G207E |
probably damaging |
Het |
| Ank2 |
T |
A |
3: 126,748,688 (GRCm39) |
H527L |
possibly damaging |
Het |
| Anks1 |
C |
A |
17: 28,207,779 (GRCm39) |
N383K |
probably damaging |
Het |
| Apba3 |
C |
T |
10: 81,105,204 (GRCm39) |
|
probably null |
Het |
| Atp9b |
C |
A |
18: 80,779,308 (GRCm39) |
V1121F |
possibly damaging |
Het |
| Bsn |
T |
C |
9: 107,988,960 (GRCm39) |
Y2264C |
probably damaging |
Het |
| Bst1 |
A |
G |
5: 43,997,799 (GRCm39) |
D266G |
probably damaging |
Het |
| Cep55 |
A |
G |
19: 38,060,202 (GRCm39) |
|
probably null |
Het |
| Ces4a |
G |
A |
8: 105,864,729 (GRCm39) |
G69S |
probably damaging |
Het |
| Ckb |
T |
C |
12: 111,637,664 (GRCm39) |
K156E |
probably benign |
Het |
| Cln3 |
T |
A |
7: 126,174,393 (GRCm39) |
H315L |
probably damaging |
Het |
| Cnot6l |
A |
G |
5: 96,227,796 (GRCm39) |
F479S |
probably damaging |
Het |
| Col1a1 |
A |
G |
11: 94,837,958 (GRCm39) |
D826G |
unknown |
Het |
| Cyp27a1 |
T |
C |
1: 74,774,564 (GRCm39) |
V194A |
probably benign |
Het |
| Dis3l2 |
C |
T |
1: 86,971,890 (GRCm39) |
P643S |
probably benign |
Het |
| Dpf3 |
T |
C |
12: 83,378,740 (GRCm39) |
D108G |
probably damaging |
Het |
| Eif2b4 |
C |
T |
5: 31,350,241 (GRCm39) |
G27D |
probably benign |
Het |
| Eif4a1 |
T |
G |
11: 69,563,251 (GRCm39) |
|
probably benign |
Het |
| Espl1 |
A |
T |
15: 102,213,372 (GRCm39) |
D566V |
probably damaging |
Het |
| Ext2 |
T |
A |
2: 93,644,024 (GRCm39) |
R86* |
probably null |
Het |
| Fasn |
A |
T |
11: 120,706,911 (GRCm39) |
F914I |
probably damaging |
Het |
| Fbf1 |
A |
G |
11: 116,043,378 (GRCm39) |
L477P |
probably benign |
Het |
| Fsd1 |
A |
T |
17: 56,303,452 (GRCm39) |
K441N |
possibly damaging |
Het |
| Fsip2 |
T |
A |
2: 82,815,384 (GRCm39) |
S3706T |
probably benign |
Het |
| Gabra5 |
A |
T |
7: 57,058,547 (GRCm39) |
N400K |
probably benign |
Het |
| Gimap8 |
G |
T |
6: 48,633,068 (GRCm39) |
G296W |
probably damaging |
Het |
| Gli2 |
A |
G |
1: 118,763,870 (GRCm39) |
V1427A |
probably benign |
Het |
| Gm7334 |
A |
T |
17: 51,005,855 (GRCm39) |
Y47F |
probably damaging |
Het |
| Gm8674 |
T |
G |
13: 50,054,791 (GRCm39) |
|
noncoding transcript |
Het |
| Gmeb2 |
G |
T |
2: 180,896,039 (GRCm39) |
T377K |
probably benign |
Het |
| Gp9 |
T |
A |
6: 87,756,229 (GRCm39) |
D81E |
probably benign |
Het |
| Il5ra |
T |
A |
6: 106,715,123 (GRCm39) |
I212F |
possibly damaging |
Het |
| Klhl18 |
G |
T |
9: 110,258,029 (GRCm39) |
N470K |
possibly damaging |
Het |
| Lfng |
G |
T |
5: 140,598,150 (GRCm39) |
|
probably null |
Het |
| Lpo |
A |
G |
11: 87,701,166 (GRCm39) |
I430T |
probably benign |
Het |
| Lrrc31 |
C |
T |
3: 30,743,417 (GRCm39) |
D183N |
probably damaging |
Het |
| Meis2 |
T |
C |
2: 115,694,893 (GRCm39) |
T410A |
probably benign |
Het |
| Myo6 |
A |
G |
9: 80,214,963 (GRCm39) |
D1232G |
probably damaging |
Het |
| Ncapd2 |
C |
T |
6: 125,146,803 (GRCm39) |
R1261H |
probably benign |
Het |
| Nfkb1 |
C |
T |
3: 135,319,743 (GRCm39) |
V251M |
probably damaging |
Het |
| Nmbr |
C |
A |
10: 14,642,730 (GRCm39) |
H96Q |
probably damaging |
Het |
| Nop14 |
C |
T |
5: 34,809,737 (GRCm39) |
R256H |
probably damaging |
Het |
| Nqo2 |
T |
A |
13: 34,165,501 (GRCm39) |
Y133N |
probably damaging |
Het |
| Or1f12 |
T |
C |
13: 21,721,357 (GRCm39) |
I273V |
probably benign |
Het |
| Or5w20 |
A |
G |
2: 87,727,157 (GRCm39) |
I213V |
probably benign |
Het |
| Pbld2 |
C |
A |
10: 62,888,017 (GRCm39) |
S168R |
probably damaging |
Het |
| Pcdhb7 |
G |
T |
18: 37,475,202 (GRCm39) |
G113* |
probably null |
Het |
| Pcdhb7 |
G |
T |
18: 37,475,203 (GRCm39) |
G113V |
probably damaging |
Het |
| Pdgfra |
A |
T |
5: 75,355,687 (GRCm39) |
T1066S |
probably damaging |
Het |
| Prdm8 |
A |
T |
5: 98,332,881 (GRCm39) |
|
probably null |
Het |
| Prdm8 |
G |
T |
5: 98,332,882 (GRCm39) |
|
probably null |
Het |
| Prkg1 |
T |
C |
19: 30,563,775 (GRCm39) |
Y479C |
probably benign |
Het |
| Pudp |
T |
C |
18: 50,701,539 (GRCm39) |
T65A |
probably benign |
Het |
| Rbbp6 |
C |
T |
7: 122,598,926 (GRCm39) |
|
probably benign |
Het |
| Rcc1 |
C |
G |
4: 132,063,046 (GRCm39) |
V187L |
probably damaging |
Het |
| Rims2 |
T |
A |
15: 39,301,124 (GRCm39) |
M285K |
probably damaging |
Het |
| Rtkn2 |
T |
C |
10: 67,877,745 (GRCm39) |
*602Q |
probably null |
Het |
| Rxfp3 |
T |
G |
15: 11,036,866 (GRCm39) |
S169R |
probably damaging |
Het |
| Sardh |
T |
C |
2: 27,118,253 (GRCm39) |
|
probably null |
Het |
| Slc24a2 |
A |
T |
4: 87,145,584 (GRCm39) |
F157I |
probably damaging |
Het |
| Slc25a20 |
T |
C |
9: 108,559,191 (GRCm39) |
Y186H |
probably damaging |
Het |
| Slc25a24 |
A |
G |
3: 109,070,864 (GRCm39) |
R408G |
probably damaging |
Het |
| Slc44a5 |
T |
G |
3: 153,959,353 (GRCm39) |
I348S |
probably damaging |
Het |
| Slc8a2 |
A |
T |
7: 15,868,100 (GRCm39) |
K111* |
probably null |
Het |
| Smc5 |
A |
G |
19: 23,211,367 (GRCm39) |
V589A |
probably damaging |
Het |
| Thbd |
A |
T |
2: 148,249,655 (GRCm39) |
I71N |
probably damaging |
Het |
| Thsd7b |
T |
C |
1: 129,605,882 (GRCm39) |
M541T |
probably benign |
Het |
| Tie1 |
T |
A |
4: 118,341,968 (GRCm39) |
|
silent |
Het |
| Tln1 |
A |
G |
4: 43,547,522 (GRCm39) |
F813S |
possibly damaging |
Het |
| Tnrc18 |
A |
T |
5: 142,751,732 (GRCm39) |
L1191* |
probably null |
Het |
| Tubb2a |
A |
C |
13: 34,259,240 (GRCm39) |
Y183* |
probably null |
Het |
| Ubr4 |
T |
A |
4: 139,123,877 (GRCm39) |
V343E |
probably damaging |
Het |
| Vwa5a |
T |
G |
9: 38,647,494 (GRCm39) |
S624R |
probably benign |
Het |
| Wwox |
G |
A |
8: 115,433,098 (GRCm39) |
V255I |
probably benign |
Het |
| Wwp1 |
T |
C |
4: 19,638,804 (GRCm39) |
K546E |
probably damaging |
Het |
| Xirp2 |
T |
A |
2: 67,340,163 (GRCm39) |
F801L |
possibly damaging |
Het |
| Zfp407 |
T |
C |
18: 84,577,589 (GRCm39) |
I1175V |
probably benign |
Het |
| Zfp646 |
T |
A |
7: 127,480,933 (GRCm39) |
C1037S |
possibly damaging |
Het |
| Zfp786 |
A |
T |
6: 47,798,202 (GRCm39) |
C245* |
probably null |
Het |
| Zfp827 |
T |
C |
8: 79,787,812 (GRCm39) |
V326A |
probably benign |
Het |
|
| Other mutations in Vmn2r93 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00743:Vmn2r93
|
APN |
17 |
18,546,504 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01326:Vmn2r93
|
APN |
17 |
18,536,906 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
IGL01328:Vmn2r93
|
APN |
17 |
18,545,819 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL01360:Vmn2r93
|
APN |
17 |
18,525,510 (GRCm39) |
missense |
possibly damaging |
0.71 |
|
IGL01382:Vmn2r93
|
APN |
17 |
18,533,578 (GRCm39) |
nonsense |
probably null |
|
|
IGL01463:Vmn2r93
|
APN |
17 |
18,525,150 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02057:Vmn2r93
|
APN |
17 |
18,546,032 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02257:Vmn2r93
|
APN |
17 |
18,545,770 (GRCm39) |
unclassified |
probably benign |
|
|
IGL02686:Vmn2r93
|
APN |
17 |
18,533,526 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
IGL02720:Vmn2r93
|
APN |
17 |
18,525,296 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03328:Vmn2r93
|
APN |
17 |
18,525,220 (GRCm39) |
missense |
probably damaging |
1.00 |
|
PIT4576001:Vmn2r93
|
UTSW |
17 |
18,533,473 (GRCm39) |
missense |
probably benign |
|
|
R0067:Vmn2r93
|
UTSW |
17 |
18,546,672 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0067:Vmn2r93
|
UTSW |
17 |
18,546,672 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0240:Vmn2r93
|
UTSW |
17 |
18,525,061 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0240:Vmn2r93
|
UTSW |
17 |
18,525,061 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0488:Vmn2r93
|
UTSW |
17 |
18,546,311 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0667:Vmn2r93
|
UTSW |
17 |
18,546,503 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0668:Vmn2r93
|
UTSW |
17 |
18,518,667 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0850:Vmn2r93
|
UTSW |
17 |
18,525,279 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R0924:Vmn2r93
|
UTSW |
17 |
18,524,443 (GRCm39) |
missense |
probably benign |
|
|
R0947:Vmn2r93
|
UTSW |
17 |
18,524,343 (GRCm39) |
missense |
probably benign |
0.06 |
|
R1124:Vmn2r93
|
UTSW |
17 |
18,518,710 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1584:Vmn2r93
|
UTSW |
17 |
18,525,413 (GRCm39) |
missense |
possibly damaging |
0.84 |
|
R1943:Vmn2r93
|
UTSW |
17 |
18,546,063 (GRCm39) |
missense |
probably benign |
0.04 |
|
R2012:Vmn2r93
|
UTSW |
17 |
18,536,840 (GRCm39) |
missense |
probably benign |
0.01 |
|
R2018:Vmn2r93
|
UTSW |
17 |
18,546,324 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2196:Vmn2r93
|
UTSW |
17 |
18,525,428 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2373:Vmn2r93
|
UTSW |
17 |
18,518,665 (GRCm39) |
missense |
probably benign |
|
|
R2864:Vmn2r93
|
UTSW |
17 |
18,546,323 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4276:Vmn2r93
|
UTSW |
17 |
18,525,092 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R4446:Vmn2r93
|
UTSW |
17 |
18,524,312 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R4537:Vmn2r93
|
UTSW |
17 |
18,525,194 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R4674:Vmn2r93
|
UTSW |
17 |
18,525,255 (GRCm39) |
missense |
probably benign |
0.34 |
|
R4726:Vmn2r93
|
UTSW |
17 |
18,536,960 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4984:Vmn2r93
|
UTSW |
17 |
18,533,389 (GRCm39) |
splice site |
probably null |
|
|
R5111:Vmn2r93
|
UTSW |
17 |
18,546,326 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5749:Vmn2r93
|
UTSW |
17 |
18,518,546 (GRCm39) |
missense |
probably benign |
0.06 |
|
R5918:Vmn2r93
|
UTSW |
17 |
18,546,030 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5921:Vmn2r93
|
UTSW |
17 |
18,546,030 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6091:Vmn2r93
|
UTSW |
17 |
18,545,958 (GRCm39) |
missense |
probably benign |
0.06 |
|
R6283:Vmn2r93
|
UTSW |
17 |
18,524,366 (GRCm39) |
missense |
probably benign |
0.02 |
|
R6680:Vmn2r93
|
UTSW |
17 |
18,536,920 (GRCm39) |
nonsense |
probably null |
|
|
R6876:Vmn2r93
|
UTSW |
17 |
18,525,450 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6963:Vmn2r93
|
UTSW |
17 |
18,536,849 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6996:Vmn2r93
|
UTSW |
17 |
18,524,903 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7027:Vmn2r93
|
UTSW |
17 |
18,533,548 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7034:Vmn2r93
|
UTSW |
17 |
18,546,672 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7036:Vmn2r93
|
UTSW |
17 |
18,546,672 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7246:Vmn2r93
|
UTSW |
17 |
18,546,012 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R7258:Vmn2r93
|
UTSW |
17 |
18,525,403 (GRCm39) |
missense |
probably benign |
0.32 |
|
R7323:Vmn2r93
|
UTSW |
17 |
18,533,497 (GRCm39) |
nonsense |
probably null |
|
|
R7325:Vmn2r93
|
UTSW |
17 |
18,524,249 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7390:Vmn2r93
|
UTSW |
17 |
18,525,329 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7427:Vmn2r93
|
UTSW |
17 |
18,546,672 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7428:Vmn2r93
|
UTSW |
17 |
18,546,672 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7448:Vmn2r93
|
UTSW |
17 |
18,546,248 (GRCm39) |
missense |
probably benign |
0.19 |
|
R7453:Vmn2r93
|
UTSW |
17 |
18,533,580 (GRCm39) |
missense |
probably benign |
0.10 |
|
R7562:Vmn2r93
|
UTSW |
17 |
18,518,731 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7662:Vmn2r93
|
UTSW |
17 |
18,525,631 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7682:Vmn2r93
|
UTSW |
17 |
18,525,583 (GRCm39) |
missense |
probably benign |
0.03 |
|
R7704:Vmn2r93
|
UTSW |
17 |
18,536,910 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7772:Vmn2r93
|
UTSW |
17 |
18,533,482 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7957:Vmn2r93
|
UTSW |
17 |
18,545,954 (GRCm39) |
nonsense |
probably null |
|
|
R8276:Vmn2r93
|
UTSW |
17 |
18,525,649 (GRCm39) |
critical splice donor site |
probably null |
|
|
R8290:Vmn2r93
|
UTSW |
17 |
18,524,291 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8362:Vmn2r93
|
UTSW |
17 |
18,546,353 (GRCm39) |
missense |
probably benign |
0.02 |
|
R8376:Vmn2r93
|
UTSW |
17 |
18,525,230 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8870:Vmn2r93
|
UTSW |
17 |
18,525,320 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R8925:Vmn2r93
|
UTSW |
17 |
18,546,500 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8927:Vmn2r93
|
UTSW |
17 |
18,546,500 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8954:Vmn2r93
|
UTSW |
17 |
18,546,252 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9038:Vmn2r93
|
UTSW |
17 |
18,524,471 (GRCm39) |
missense |
probably benign |
|
|
R9131:Vmn2r93
|
UTSW |
17 |
18,546,143 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9205:Vmn2r93
|
UTSW |
17 |
18,524,281 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9530:Vmn2r93
|
UTSW |
17 |
18,518,562 (GRCm39) |
missense |
probably damaging |
0.96 |
|
Z1088:Vmn2r93
|
UTSW |
17 |
18,546,665 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1177:Vmn2r93
|
UTSW |
17 |
18,525,600 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- CGTCTGTCCATTGTGAAGAAC -3'
(R):5'- GAGATGAAGTAATGTCCCAATTTGG -3'
Sequencing Primer
(F):5'- GTGTTTTTATCCCACTGACAG -3'
(R):5'- ATGATCCTGTGAGTGCAG -3'
|
| Posted On |
2016-04-15 |
Incidental Mutation