Incidental Mutation 'R4937:Rapgef6'
ID |
380502 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Rapgef6
|
Ensembl Gene |
ENSMUSG00000037533 |
Gene Name |
Rap guanine nucleotide exchange factor (GEF) 6 |
Synonyms |
PDZ-GEF2, C030018K18Rik, Pdzgef2, RA-GEF-2 |
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R4937 (G1)
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
11 |
Chromosomal Location |
54413673-54590111 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 54548143 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Threonine to Alanine
at position 486
(T486A)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000092114
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000094536]
[ENSMUST00000101206]
[ENSMUST00000102743]
[ENSMUST00000108894]
[ENSMUST00000207429]
|
AlphaFold |
Q5NCJ1 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000094536
AA Change: T486A
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000092114 Gene: ENSMUSG00000037533 AA Change: T486A
Domain | Start | End | E-Value | Type |
cNMP
|
1 |
113 |
6.64e-7 |
SMART |
RasGEFN
|
127 |
240 |
4.35e-33 |
SMART |
PDZ
|
255 |
327 |
8.86e-16 |
SMART |
low complexity region
|
409 |
420 |
N/A |
INTRINSIC |
RA
|
464 |
550 |
1.47e-20 |
SMART |
RasGEF
|
571 |
853 |
3.88e-84 |
SMART |
low complexity region
|
944 |
957 |
N/A |
INTRINSIC |
low complexity region
|
972 |
989 |
N/A |
INTRINSIC |
low complexity region
|
1016 |
1061 |
N/A |
INTRINSIC |
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000101206
AA Change: T771A
PolyPhen 2
Score 0.688 (Sensitivity: 0.86; Specificity: 0.92)
|
SMART Domains |
Protein: ENSMUSP00000098766 Gene: ENSMUSG00000037533 AA Change: T771A
Domain | Start | End | E-Value | Type |
internal_repeat_1
|
10 |
82 |
1.45e-5 |
PROSPERO |
low complexity region
|
187 |
205 |
N/A |
INTRINSIC |
low complexity region
|
231 |
239 |
N/A |
INTRINSIC |
cNMP
|
280 |
398 |
4.8e-13 |
SMART |
RasGEFN
|
412 |
525 |
4.35e-33 |
SMART |
PDZ
|
540 |
612 |
8.86e-16 |
SMART |
low complexity region
|
694 |
705 |
N/A |
INTRINSIC |
RA
|
749 |
835 |
1.47e-20 |
SMART |
RasGEF
|
856 |
1095 |
5.35e-87 |
SMART |
low complexity region
|
1237 |
1250 |
N/A |
INTRINSIC |
low complexity region
|
1270 |
1293 |
N/A |
INTRINSIC |
low complexity region
|
1345 |
1364 |
N/A |
INTRINSIC |
low complexity region
|
1368 |
1380 |
N/A |
INTRINSIC |
low complexity region
|
1444 |
1452 |
N/A |
INTRINSIC |
low complexity region
|
1555 |
1568 |
N/A |
INTRINSIC |
low complexity region
|
1591 |
1604 |
N/A |
INTRINSIC |
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000102743
AA Change: T771A
PolyPhen 2
Score 0.688 (Sensitivity: 0.86; Specificity: 0.92)
|
SMART Domains |
Protein: ENSMUSP00000099804 Gene: ENSMUSG00000037533 AA Change: T771A
Domain | Start | End | E-Value | Type |
internal_repeat_1
|
10 |
82 |
1.42e-5 |
PROSPERO |
low complexity region
|
187 |
205 |
N/A |
INTRINSIC |
low complexity region
|
231 |
239 |
N/A |
INTRINSIC |
cNMP
|
280 |
398 |
4.8e-13 |
SMART |
RasGEFN
|
412 |
525 |
4.35e-33 |
SMART |
PDZ
|
540 |
612 |
8.86e-16 |
SMART |
low complexity region
|
694 |
705 |
N/A |
INTRINSIC |
RA
|
749 |
835 |
1.47e-20 |
SMART |
RasGEF
|
856 |
1138 |
3.88e-84 |
SMART |
low complexity region
|
1229 |
1242 |
N/A |
INTRINSIC |
low complexity region
|
1262 |
1285 |
N/A |
INTRINSIC |
low complexity region
|
1337 |
1356 |
N/A |
INTRINSIC |
low complexity region
|
1360 |
1372 |
N/A |
INTRINSIC |
low complexity region
|
1436 |
1444 |
N/A |
INTRINSIC |
low complexity region
|
1547 |
1560 |
N/A |
INTRINSIC |
low complexity region
|
1583 |
1596 |
N/A |
INTRINSIC |
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000108894
AA Change: T486A
PolyPhen 2
Score 0.730 (Sensitivity: 0.86; Specificity: 0.92)
|
SMART Domains |
Protein: ENSMUSP00000104522 Gene: ENSMUSG00000037533 AA Change: T486A
Domain | Start | End | E-Value | Type |
cNMP
|
1 |
113 |
6.64e-7 |
SMART |
RasGEFN
|
127 |
240 |
4.35e-33 |
SMART |
PDZ
|
255 |
327 |
8.86e-16 |
SMART |
low complexity region
|
409 |
420 |
N/A |
INTRINSIC |
RA
|
464 |
550 |
1.47e-20 |
SMART |
RasGEF
|
571 |
810 |
5.35e-87 |
SMART |
low complexity region
|
952 |
965 |
N/A |
INTRINSIC |
low complexity region
|
980 |
997 |
N/A |
INTRINSIC |
low complexity region
|
1024 |
1069 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000175600
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000207429
AA Change: T776A
PolyPhen 2
Score 0.963 (Sensitivity: 0.78; Specificity: 0.95)
|
Coding Region Coverage |
- 1x: 98.9%
- 3x: 98.0%
- 10x: 95.1%
- 20x: 88.3%
|
Validation Efficiency |
|
MGI Phenotype |
PHENOTYPE: Mice homozygous for a null allele exhibit an inlarged spleen, increased IgE and IgG levels and altered cytokine production. [provided by MGI curators]
|
Allele List at MGI |
All alleles(16) : Targeted, knock-out(1) Targeted, other(2) Gene trapped(13) |
Other mutations in this stock |
Total: 102 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
4930522L14Rik |
A |
G |
5: 109,884,067 (GRCm39) |
F597S |
probably benign |
Het |
Aasdh |
C |
A |
5: 77,036,501 (GRCm39) |
E347* |
probably null |
Het |
Abca16 |
G |
T |
7: 120,126,309 (GRCm39) |
C1155F |
probably damaging |
Het |
Adam26a |
T |
C |
8: 44,021,918 (GRCm39) |
D524G |
probably damaging |
Het |
Adamts20 |
G |
C |
15: 94,277,656 (GRCm39) |
H269D |
probably benign |
Het |
Akap9 |
T |
A |
5: 4,100,145 (GRCm39) |
|
probably null |
Het |
Akt3 |
T |
C |
1: 176,877,693 (GRCm39) |
I358M |
possibly damaging |
Het |
Aldh9a1 |
G |
T |
1: 167,189,376 (GRCm39) |
A375S |
probably damaging |
Het |
Alg2 |
A |
G |
4: 47,473,974 (GRCm39) |
S105P |
probably benign |
Het |
Amph |
A |
G |
13: 19,288,515 (GRCm39) |
T335A |
probably damaging |
Het |
Ank2 |
C |
T |
3: 126,756,050 (GRCm39) |
V1056M |
probably damaging |
Het |
Apoh |
A |
G |
11: 108,298,204 (GRCm39) |
D168G |
probably benign |
Het |
Arfgef3 |
C |
T |
10: 18,465,454 (GRCm39) |
A2130T |
probably damaging |
Het |
Arhgap30 |
A |
G |
1: 171,230,897 (GRCm39) |
D218G |
probably benign |
Het |
Ascc3 |
C |
T |
10: 50,699,894 (GRCm39) |
P1906S |
probably damaging |
Het |
Atp11b |
T |
G |
3: 35,861,157 (GRCm39) |
|
probably null |
Het |
B4galnt2 |
A |
G |
11: 95,759,255 (GRCm39) |
V343A |
probably damaging |
Het |
Barhl1 |
T |
C |
2: 28,799,785 (GRCm39) |
Y280C |
probably damaging |
Het |
Bcar1 |
A |
T |
8: 112,447,669 (GRCm39) |
Y103N |
probably damaging |
Het |
Bid |
A |
G |
6: 120,872,707 (GRCm39) |
I150T |
probably benign |
Het |
Ccdc171 |
T |
C |
4: 83,467,876 (GRCm39) |
S74P |
probably damaging |
Het |
Ccni |
A |
T |
5: 93,336,113 (GRCm39) |
|
probably null |
Het |
Cct8l1 |
A |
G |
5: 25,721,891 (GRCm39) |
E202G |
probably benign |
Het |
Cd200r3 |
A |
G |
16: 44,774,622 (GRCm39) |
K212E |
probably benign |
Het |
Cdh19 |
A |
G |
1: 110,817,694 (GRCm39) |
S683P |
probably damaging |
Het |
Ces2b |
A |
T |
8: 105,559,413 (GRCm39) |
H93L |
probably benign |
Het |
Cimip2b |
T |
A |
4: 43,427,514 (GRCm39) |
Q270L |
possibly damaging |
Het |
Clec4a1 |
G |
A |
6: 122,907,654 (GRCm39) |
C114Y |
probably damaging |
Het |
Dcc |
G |
T |
18: 71,675,320 (GRCm39) |
S636* |
probably null |
Het |
Dcdc2c |
T |
C |
12: 28,580,472 (GRCm39) |
D187G |
possibly damaging |
Het |
Dgkb |
G |
T |
12: 38,164,657 (GRCm39) |
E150* |
probably null |
Het |
Dhx30 |
A |
G |
9: 109,915,029 (GRCm39) |
L884P |
probably damaging |
Het |
Dmwd |
T |
G |
7: 18,815,228 (GRCm39) |
|
probably null |
Het |
Dnah17 |
T |
A |
11: 117,932,980 (GRCm39) |
N3593Y |
probably damaging |
Het |
Dnm2 |
G |
A |
9: 21,392,633 (GRCm39) |
S447N |
probably benign |
Het |
Elk4 |
G |
A |
1: 131,945,419 (GRCm39) |
G99D |
probably damaging |
Het |
Entpd1 |
A |
T |
19: 40,727,965 (GRCm39) |
|
probably benign |
Het |
Fam114a1 |
T |
A |
5: 65,137,070 (GRCm39) |
D4E |
probably damaging |
Het |
Fbln2 |
A |
G |
6: 91,241,681 (GRCm39) |
D754G |
probably damaging |
Het |
Fhip2a |
T |
C |
19: 57,367,069 (GRCm39) |
V204A |
probably benign |
Het |
Foxred2 |
T |
C |
15: 77,840,035 (GRCm39) |
N85S |
probably damaging |
Het |
Fut9 |
A |
G |
4: 25,799,591 (GRCm39) |
|
probably benign |
Het |
Gm1818 |
G |
A |
12: 48,606,607 (GRCm39) |
|
noncoding transcript |
Het |
Gm4894 |
C |
A |
9: 49,190,000 (GRCm39) |
Q92K |
unknown |
Het |
Gpx2 |
T |
C |
12: 76,839,574 (GRCm39) |
I141M |
probably benign |
Het |
Gusb |
T |
C |
5: 130,024,326 (GRCm39) |
T476A |
probably damaging |
Het |
Hmmr |
G |
A |
11: 40,612,667 (GRCm39) |
T180I |
possibly damaging |
Het |
Itgbl1 |
T |
C |
14: 124,210,780 (GRCm39) |
Y493H |
probably benign |
Het |
Klhdc9 |
G |
T |
1: 171,187,951 (GRCm39) |
C93* |
probably null |
Het |
Ldaf1 |
T |
C |
7: 119,715,535 (GRCm39) |
S120P |
probably damaging |
Het |
Lpar3 |
A |
G |
3: 145,990,506 (GRCm39) |
K275E |
probably damaging |
Het |
Lrp1b |
A |
G |
2: 40,692,897 (GRCm39) |
|
probably null |
Het |
Lrrc63 |
C |
T |
14: 75,322,389 (GRCm39) |
G572S |
probably damaging |
Het |
Mapk11 |
A |
T |
15: 89,030,685 (GRCm39) |
D98E |
probably benign |
Het |
Mgat4f |
T |
A |
1: 134,317,714 (GRCm39) |
M162K |
probably benign |
Het |
Net1 |
G |
A |
13: 3,934,905 (GRCm39) |
R374W |
probably damaging |
Het |
Nlrp4g |
T |
A |
9: 124,354,005 (GRCm38) |
|
noncoding transcript |
Het |
Nrap |
T |
A |
19: 56,335,652 (GRCm39) |
Y923F |
probably damaging |
Het |
Or13a20 |
T |
A |
7: 140,232,534 (GRCm39) |
M214K |
probably benign |
Het |
Or4c108 |
T |
A |
2: 88,803,834 (GRCm39) |
I134F |
probably damaging |
Het |
Or6c215 |
A |
T |
10: 129,637,932 (GRCm39) |
V154E |
probably benign |
Het |
Plxnc1 |
A |
G |
10: 94,677,335 (GRCm39) |
V964A |
probably damaging |
Het |
Pmfbp1 |
A |
G |
8: 110,262,498 (GRCm39) |
I731V |
probably benign |
Het |
Polq |
T |
A |
16: 36,848,274 (GRCm39) |
S294T |
probably benign |
Het |
Pomgnt2 |
T |
C |
9: 121,811,620 (GRCm39) |
D387G |
probably benign |
Het |
Pramel25 |
T |
C |
4: 143,520,407 (GRCm39) |
V53A |
possibly damaging |
Het |
Prmt2 |
G |
A |
10: 76,056,842 (GRCm39) |
T227I |
probably damaging |
Het |
Psmd1 |
T |
A |
1: 86,010,947 (GRCm39) |
F341I |
probably damaging |
Het |
Ptpn23 |
T |
C |
9: 110,221,806 (GRCm39) |
M127V |
probably benign |
Het |
Ptprc |
A |
G |
1: 138,017,238 (GRCm39) |
F483L |
probably damaging |
Het |
Rab35 |
A |
C |
5: 115,778,147 (GRCm39) |
I38L |
probably damaging |
Het |
Rgl3 |
A |
T |
9: 21,899,004 (GRCm39) |
C68* |
probably null |
Het |
Rilpl1 |
T |
C |
5: 124,653,594 (GRCm39) |
E189G |
possibly damaging |
Het |
Rnf217 |
T |
C |
10: 31,393,520 (GRCm39) |
I354V |
probably benign |
Het |
Rspo3 |
T |
C |
10: 29,382,524 (GRCm39) |
D50G |
probably damaging |
Het |
Sbno1 |
A |
G |
5: 124,512,672 (GRCm39) |
S1366P |
possibly damaging |
Het |
Sema3c |
A |
G |
5: 17,899,684 (GRCm39) |
D392G |
probably benign |
Het |
Serpinb9e |
A |
T |
13: 33,436,935 (GRCm39) |
Y85F |
probably benign |
Het |
Shprh |
C |
T |
10: 11,032,863 (GRCm39) |
T283I |
probably benign |
Het |
Sipa1l1 |
T |
C |
12: 82,388,103 (GRCm39) |
S110P |
probably benign |
Het |
Slc16a12 |
T |
A |
19: 34,652,643 (GRCm39) |
I168F |
probably damaging |
Het |
Slc23a3 |
A |
G |
1: 75,109,268 (GRCm39) |
S221P |
probably damaging |
Het |
Slc35b3 |
A |
T |
13: 39,116,887 (GRCm39) |
I366K |
possibly damaging |
Het |
Slc44a5 |
T |
C |
3: 153,949,252 (GRCm39) |
|
probably null |
Het |
Slc5a12 |
A |
T |
2: 110,450,753 (GRCm39) |
D316V |
probably damaging |
Het |
Ssr3 |
A |
G |
3: 65,299,874 (GRCm39) |
S29P |
probably damaging |
Het |
Taf2 |
G |
A |
15: 54,890,619 (GRCm39) |
Q1055* |
probably null |
Het |
Them6 |
A |
T |
15: 74,593,367 (GRCm39) |
D75V |
probably damaging |
Het |
Tom1l2 |
A |
G |
11: 60,149,744 (GRCm39) |
S239P |
probably damaging |
Het |
Tspear |
A |
G |
10: 77,710,877 (GRCm39) |
T500A |
probably damaging |
Het |
Tubgcp6 |
G |
A |
15: 88,985,752 (GRCm39) |
A1487V |
probably damaging |
Het |
Uba7 |
G |
A |
9: 107,856,190 (GRCm39) |
V522I |
possibly damaging |
Het |
Virma |
C |
A |
4: 11,521,147 (GRCm39) |
C901* |
probably null |
Het |
Vmn1r172 |
A |
T |
7: 23,359,312 (GRCm39) |
I66F |
possibly damaging |
Het |
Vmn2r82 |
A |
T |
10: 79,215,010 (GRCm39) |
Y331F |
probably benign |
Het |
Wdr55 |
G |
A |
18: 36,895,451 (GRCm39) |
V143I |
probably benign |
Het |
Zbtb49 |
A |
T |
5: 38,371,307 (GRCm39) |
D191E |
possibly damaging |
Het |
Zfhx4 |
A |
G |
3: 5,307,071 (GRCm39) |
H99R |
probably damaging |
Het |
Zfp1005 |
C |
T |
2: 150,110,680 (GRCm39) |
H457Y |
unknown |
Het |
Zfp560 |
C |
T |
9: 20,259,263 (GRCm39) |
C533Y |
probably damaging |
Het |
Zfp646 |
C |
T |
7: 127,478,354 (GRCm39) |
A177V |
probably benign |
Het |
Zfp653 |
C |
T |
9: 21,967,074 (GRCm39) |
E604K |
probably damaging |
Het |
|
Other mutations in Rapgef6 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00436:Rapgef6
|
APN |
11 |
54,570,091 (GRCm39) |
missense |
probably benign |
0.00 |
IGL00507:Rapgef6
|
APN |
11 |
54,554,935 (GRCm39) |
nonsense |
probably null |
|
IGL00809:Rapgef6
|
APN |
11 |
54,540,126 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL00843:Rapgef6
|
APN |
11 |
54,582,099 (GRCm39) |
missense |
probably benign |
0.03 |
IGL00899:Rapgef6
|
APN |
11 |
54,510,844 (GRCm39) |
nonsense |
probably null |
|
IGL01372:Rapgef6
|
APN |
11 |
54,559,437 (GRCm39) |
splice site |
probably benign |
|
IGL01604:Rapgef6
|
APN |
11 |
54,585,389 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL01935:Rapgef6
|
APN |
11 |
54,501,668 (GRCm39) |
missense |
possibly damaging |
0.78 |
IGL01991:Rapgef6
|
APN |
11 |
54,443,695 (GRCm39) |
missense |
probably benign |
0.37 |
IGL02243:Rapgef6
|
APN |
11 |
54,567,226 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02407:Rapgef6
|
APN |
11 |
54,567,181 (GRCm39) |
missense |
possibly damaging |
0.91 |
IGL02676:Rapgef6
|
APN |
11 |
54,540,172 (GRCm39) |
unclassified |
probably benign |
|
IGL02934:Rapgef6
|
APN |
11 |
54,516,690 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03076:Rapgef6
|
APN |
11 |
54,516,793 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03110:Rapgef6
|
APN |
11 |
54,586,915 (GRCm39) |
missense |
probably damaging |
0.97 |
IGL03256:Rapgef6
|
APN |
11 |
54,548,255 (GRCm39) |
missense |
probably damaging |
1.00 |
shocker
|
UTSW |
11 |
54,510,842 (GRCm39) |
missense |
probably damaging |
1.00 |
D4216:Rapgef6
|
UTSW |
11 |
54,559,572 (GRCm39) |
splice site |
probably benign |
|
PIT4305001:Rapgef6
|
UTSW |
11 |
54,570,203 (GRCm39) |
missense |
probably damaging |
1.00 |
PIT4366001:Rapgef6
|
UTSW |
11 |
54,582,446 (GRCm39) |
missense |
probably damaging |
0.98 |
R0047:Rapgef6
|
UTSW |
11 |
54,437,204 (GRCm39) |
missense |
possibly damaging |
0.65 |
R0047:Rapgef6
|
UTSW |
11 |
54,437,204 (GRCm39) |
missense |
possibly damaging |
0.65 |
R0125:Rapgef6
|
UTSW |
11 |
54,516,701 (GRCm39) |
nonsense |
probably null |
|
R0189:Rapgef6
|
UTSW |
11 |
54,582,075 (GRCm39) |
missense |
probably benign |
|
R0201:Rapgef6
|
UTSW |
11 |
54,510,767 (GRCm39) |
missense |
probably damaging |
1.00 |
R0505:Rapgef6
|
UTSW |
11 |
54,516,789 (GRCm39) |
missense |
probably benign |
0.00 |
R0524:Rapgef6
|
UTSW |
11 |
54,581,110 (GRCm39) |
missense |
probably benign |
0.32 |
R0853:Rapgef6
|
UTSW |
11 |
54,559,503 (GRCm39) |
missense |
probably damaging |
1.00 |
R1203:Rapgef6
|
UTSW |
11 |
54,582,525 (GRCm39) |
missense |
probably benign |
0.09 |
R1440:Rapgef6
|
UTSW |
11 |
54,517,534 (GRCm39) |
missense |
probably damaging |
1.00 |
R1453:Rapgef6
|
UTSW |
11 |
54,530,553 (GRCm39) |
splice site |
probably null |
|
R1530:Rapgef6
|
UTSW |
11 |
54,552,009 (GRCm39) |
missense |
probably damaging |
1.00 |
R1593:Rapgef6
|
UTSW |
11 |
54,437,223 (GRCm39) |
frame shift |
probably null |
|
R1620:Rapgef6
|
UTSW |
11 |
54,517,420 (GRCm39) |
missense |
possibly damaging |
0.88 |
R1628:Rapgef6
|
UTSW |
11 |
54,437,223 (GRCm39) |
frame shift |
probably null |
|
R1629:Rapgef6
|
UTSW |
11 |
54,437,223 (GRCm39) |
frame shift |
probably null |
|
R1630:Rapgef6
|
UTSW |
11 |
54,437,223 (GRCm39) |
frame shift |
probably null |
|
R1634:Rapgef6
|
UTSW |
11 |
54,437,223 (GRCm39) |
frame shift |
probably null |
|
R1640:Rapgef6
|
UTSW |
11 |
54,548,231 (GRCm39) |
missense |
probably damaging |
1.00 |
R1686:Rapgef6
|
UTSW |
11 |
54,582,458 (GRCm39) |
missense |
possibly damaging |
0.81 |
R1722:Rapgef6
|
UTSW |
11 |
54,437,223 (GRCm39) |
frame shift |
probably null |
|
R1743:Rapgef6
|
UTSW |
11 |
54,567,110 (GRCm39) |
missense |
probably damaging |
1.00 |
R1816:Rapgef6
|
UTSW |
11 |
54,585,314 (GRCm39) |
missense |
probably benign |
|
R1851:Rapgef6
|
UTSW |
11 |
54,533,637 (GRCm39) |
missense |
probably benign |
0.01 |
R1852:Rapgef6
|
UTSW |
11 |
54,533,637 (GRCm39) |
missense |
probably benign |
0.01 |
R1868:Rapgef6
|
UTSW |
11 |
54,437,223 (GRCm39) |
frame shift |
probably null |
|
R1888:Rapgef6
|
UTSW |
11 |
54,551,654 (GRCm39) |
missense |
probably damaging |
1.00 |
R1888:Rapgef6
|
UTSW |
11 |
54,551,654 (GRCm39) |
missense |
probably damaging |
1.00 |
R1942:Rapgef6
|
UTSW |
11 |
54,548,089 (GRCm39) |
missense |
possibly damaging |
0.95 |
R1943:Rapgef6
|
UTSW |
11 |
54,548,089 (GRCm39) |
missense |
possibly damaging |
0.95 |
R2031:Rapgef6
|
UTSW |
11 |
54,443,684 (GRCm39) |
missense |
probably benign |
0.30 |
R2087:Rapgef6
|
UTSW |
11 |
54,522,075 (GRCm39) |
missense |
probably damaging |
1.00 |
R2106:Rapgef6
|
UTSW |
11 |
54,559,512 (GRCm39) |
missense |
probably benign |
0.17 |
R2362:Rapgef6
|
UTSW |
11 |
54,585,098 (GRCm39) |
missense |
probably damaging |
1.00 |
R2484:Rapgef6
|
UTSW |
11 |
54,533,582 (GRCm39) |
missense |
possibly damaging |
0.48 |
R2566:Rapgef6
|
UTSW |
11 |
54,578,537 (GRCm39) |
missense |
possibly damaging |
0.66 |
R2872:Rapgef6
|
UTSW |
11 |
54,552,001 (GRCm39) |
missense |
probably damaging |
1.00 |
R2872:Rapgef6
|
UTSW |
11 |
54,552,001 (GRCm39) |
missense |
probably damaging |
1.00 |
R3744:Rapgef6
|
UTSW |
11 |
54,516,760 (GRCm39) |
missense |
probably benign |
0.40 |
R3848:Rapgef6
|
UTSW |
11 |
54,582,134 (GRCm39) |
missense |
probably damaging |
0.97 |
R4823:Rapgef6
|
UTSW |
11 |
54,585,326 (GRCm39) |
missense |
probably benign |
0.08 |
R4859:Rapgef6
|
UTSW |
11 |
54,526,989 (GRCm39) |
missense |
probably benign |
|
R4906:Rapgef6
|
UTSW |
11 |
54,443,662 (GRCm39) |
missense |
probably damaging |
1.00 |
R4911:Rapgef6
|
UTSW |
11 |
54,513,143 (GRCm39) |
missense |
probably damaging |
0.97 |
R5033:Rapgef6
|
UTSW |
11 |
54,582,207 (GRCm39) |
missense |
possibly damaging |
0.92 |
R5249:Rapgef6
|
UTSW |
11 |
54,413,943 (GRCm39) |
missense |
probably benign |
0.19 |
R5304:Rapgef6
|
UTSW |
11 |
54,548,200 (GRCm39) |
missense |
probably benign |
0.01 |
R5656:Rapgef6
|
UTSW |
11 |
54,526,962 (GRCm39) |
missense |
possibly damaging |
0.95 |
R5701:Rapgef6
|
UTSW |
11 |
54,567,220 (GRCm39) |
missense |
possibly damaging |
0.76 |
R5758:Rapgef6
|
UTSW |
11 |
54,559,470 (GRCm39) |
missense |
probably damaging |
1.00 |
R5973:Rapgef6
|
UTSW |
11 |
54,530,609 (GRCm39) |
missense |
probably damaging |
1.00 |
R6177:Rapgef6
|
UTSW |
11 |
54,510,842 (GRCm39) |
missense |
probably damaging |
1.00 |
R6268:Rapgef6
|
UTSW |
11 |
54,540,073 (GRCm39) |
missense |
probably damaging |
1.00 |
R6287:Rapgef6
|
UTSW |
11 |
54,517,164 (GRCm39) |
splice site |
probably null |
|
R6293:Rapgef6
|
UTSW |
11 |
54,525,607 (GRCm39) |
missense |
probably damaging |
1.00 |
R6471:Rapgef6
|
UTSW |
11 |
54,582,563 (GRCm39) |
missense |
probably damaging |
0.99 |
R6863:Rapgef6
|
UTSW |
11 |
54,437,206 (GRCm39) |
missense |
probably benign |
0.00 |
R6950:Rapgef6
|
UTSW |
11 |
54,567,206 (GRCm39) |
missense |
probably benign |
0.09 |
R7144:Rapgef6
|
UTSW |
11 |
54,548,191 (GRCm39) |
missense |
possibly damaging |
0.78 |
R7171:Rapgef6
|
UTSW |
11 |
54,567,189 (GRCm39) |
missense |
possibly damaging |
0.94 |
R7199:Rapgef6
|
UTSW |
11 |
54,437,252 (GRCm39) |
missense |
probably benign |
0.00 |
R7291:Rapgef6
|
UTSW |
11 |
54,582,065 (GRCm39) |
missense |
probably benign |
0.05 |
R7436:Rapgef6
|
UTSW |
11 |
54,501,747 (GRCm39) |
critical splice donor site |
probably null |
|
R7498:Rapgef6
|
UTSW |
11 |
54,510,830 (GRCm39) |
missense |
probably damaging |
1.00 |
R7506:Rapgef6
|
UTSW |
11 |
54,526,997 (GRCm39) |
missense |
probably benign |
0.00 |
R7527:Rapgef6
|
UTSW |
11 |
54,525,787 (GRCm39) |
missense |
unknown |
|
R7646:Rapgef6
|
UTSW |
11 |
54,516,780 (GRCm39) |
missense |
probably benign |
0.00 |
R7655:Rapgef6
|
UTSW |
11 |
54,585,279 (GRCm39) |
missense |
probably benign |
0.10 |
R7656:Rapgef6
|
UTSW |
11 |
54,585,279 (GRCm39) |
missense |
probably benign |
0.10 |
R7687:Rapgef6
|
UTSW |
11 |
54,551,901 (GRCm39) |
missense |
possibly damaging |
0.93 |
R7768:Rapgef6
|
UTSW |
11 |
54,517,414 (GRCm39) |
missense |
probably damaging |
1.00 |
R7788:Rapgef6
|
UTSW |
11 |
54,585,225 (GRCm39) |
missense |
probably damaging |
1.00 |
R7890:Rapgef6
|
UTSW |
11 |
54,517,549 (GRCm39) |
missense |
probably damaging |
1.00 |
R8113:Rapgef6
|
UTSW |
11 |
54,516,784 (GRCm39) |
missense |
probably benign |
0.03 |
R8337:Rapgef6
|
UTSW |
11 |
54,522,127 (GRCm39) |
nonsense |
probably null |
|
R8393:Rapgef6
|
UTSW |
11 |
54,578,487 (GRCm39) |
missense |
probably benign |
|
R8465:Rapgef6
|
UTSW |
11 |
54,582,308 (GRCm39) |
missense |
probably benign |
0.00 |
R8492:Rapgef6
|
UTSW |
11 |
54,581,063 (GRCm39) |
missense |
probably damaging |
0.99 |
R8791:Rapgef6
|
UTSW |
11 |
54,459,295 (GRCm39) |
missense |
probably benign |
0.15 |
R8866:Rapgef6
|
UTSW |
11 |
54,443,700 (GRCm39) |
critical splice donor site |
probably null |
|
R8917:Rapgef6
|
UTSW |
11 |
54,582,392 (GRCm39) |
nonsense |
probably null |
|
R8921:Rapgef6
|
UTSW |
11 |
54,570,065 (GRCm39) |
missense |
probably benign |
0.09 |
R9031:Rapgef6
|
UTSW |
11 |
54,578,667 (GRCm39) |
missense |
probably benign |
0.00 |
R9093:Rapgef6
|
UTSW |
11 |
54,487,912 (GRCm39) |
nonsense |
probably null |
|
R9354:Rapgef6
|
UTSW |
11 |
54,510,749 (GRCm39) |
missense |
possibly damaging |
0.66 |
R9514:Rapgef6
|
UTSW |
11 |
54,443,684 (GRCm39) |
missense |
probably benign |
0.14 |
R9516:Rapgef6
|
UTSW |
11 |
54,582,169 (GRCm39) |
missense |
probably damaging |
1.00 |
R9739:Rapgef6
|
UTSW |
11 |
54,513,189 (GRCm39) |
missense |
probably benign |
0.03 |
R9789:Rapgef6
|
UTSW |
11 |
54,540,097 (GRCm39) |
missense |
probably benign |
0.03 |
|
Predicted Primers |
PCR Primer
(F):5'- GGATACATTTCTGTCATATCCTGTGTG -3'
(R):5'- ATTCAGGGCATGCTCACTCAC -3'
Sequencing Primer
(F):5'- GTCATATCCTGTGTGAAATAGAAGTG -3'
(R):5'- CCTTCCATTGAGTTGAATTCTATCAG -3'
|
Posted On |
2016-04-15 |