Mutagenetix > Incidental Mutation

Incidental Mutation 'R4934:F13a1'

380844

Institutional Source

Beutler Lab

Gene Symbol

F13a1

Ensembl Gene

ENSMUSG00000039109

Gene Name

coagulation factor XIII, A1 subunit

Synonyms

Factor XIIIA, 1200014I03Rik

MMRRC Submission

042534-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R4934 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

37051152-37234220 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 37061736 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Proline to Threonine at position 676 (P676T)

Ref Sequence

ENSEMBL: ENSMUSP00000128316 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000037491] [ENSMUST00000164727]

AlphaFold

Q8BH61

Predicted Effect

probably benign
Transcript: ENSMUST00000037491
AA Change: P676T

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000048667
Gene: ENSMUSG00000039109
AA Change: P676T

Domain	Start	End	E-Value	Type
Pfam:Transglut_N	47	165	9e-34	PFAM
TGc	307	400	2.01e-45	SMART
Pfam:Transglut_C	519	623	2e-26	PFAM
Pfam:Transglut_C	631	728	1.3e-21	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000164727
AA Change: P676T

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000128316
Gene: ENSMUSG00000039109
AA Change: P676T

Domain	Start	End	E-Value	Type
Pfam:Transglut_N	46	167	3e-38	PFAM
TGc	307	400	2.01e-45	SMART
Pfam:Transglut_C	519	623	2.2e-23	PFAM
Pfam:Transglut_C	631	728	1.1e-22	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000225846

Meta Mutation Damage Score

0.1058

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.0%
20x: 91.4%

Validation Efficiency

99% (134/135)

MGI Phenotype

FUNCTION: This gene encodes subunit A of the coagulation factor XIII that catalyzes the final step of the blood coagulation pathway. The encoded protein associates with subunit B to form a heterotetrameric proenzyme that undergoes thrombin-mediated proteolysis to generate active factor XIIIa. The transglutaminase activity of factor XIIIa is required for the calcium-dependent crosslinking of fibrin, leading to the formation of a clot. Mice lacking the encoded protein display impaired reproduction and reduced survival due to bleeding episodes, hematothorax, hematoperitoneum and subcutaneous hemorrhage. Additionally, mice lacking the encoded protein exhibit impaired wound healing and inadequate healing of myocardial infarction. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2015]
PHENOTYPE: Homozygous mutant mice exhibit bleeding symptoms, increased lethality, and impaired fertility. [provided by MGI curators]

Allele List at MGI

All alleles(2) : Targeted, knock-out(2)

Other mutations in this stock

Total: 125 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4931428L18Rik	A	T	1: 31,261,580 (GRCm39)		probably benign	Het
Acy1	T	A	9: 106,312,321 (GRCm39)	I14F	probably null	Het
Ago1	T	C	4: 126,342,652 (GRCm39)	D193G	possibly damaging	Het
Arhgap45	A	T	10: 79,856,791 (GRCm39)	H201L	probably damaging	Het
Armc9	G	A	1: 86,140,801 (GRCm39)	D63N	probably damaging	Het
Asb17	A	T	3: 153,556,336 (GRCm39)	I148F	possibly damaging	Het
Atf7ip2	A	G	16: 10,059,447 (GRCm39)	E329G	possibly damaging	Het
Atp2a1	T	A	7: 126,052,600 (GRCm39)	D373V	probably benign	Het
Cacna1e	G	T	1: 154,357,380 (GRCm39)	Y603*	probably null	Het
Cbln4	G	A	2: 171,880,901 (GRCm39)	T131I	probably damaging	Het
Ccdc126	A	G	6: 49,311,181 (GRCm39)	E63G	probably damaging	Het
Ccl4	T	A	11: 83,553,504 (GRCm39)	S6T	unknown	Het
Ccnb1	A	T	13: 100,918,209 (GRCm39)	I146K	possibly damaging	Het
Ccr8	T	A	9: 119,923,815 (GRCm39)	M310K	probably benign	Het
Cd180	A	T	13: 102,875,672 (GRCm39)		probably null	Het
Cd46	G	C	1: 194,765,107 (GRCm39)		probably benign	Het
Cebpb	A	G	2: 167,531,005 (GRCm39)	M22V	probably benign	Het
Cep152	A	G	2: 125,453,016 (GRCm39)	I352T	possibly damaging	Het
Cep295	T	G	9: 15,244,456 (GRCm39)	E1333D	probably damaging	Het
Ces4a	A	G	8: 105,864,613 (GRCm39)	H30R	probably benign	Het
Chrm3	A	G	13: 9,927,450 (GRCm39)	Y529H	probably damaging	Het
Chrnb4	T	C	9: 54,942,101 (GRCm39)	Y391C	probably benign	Het
Clca3a2	A	G	3: 144,523,692 (GRCm39)	Y98H	probably damaging	Het
Clvs1	C	T	4: 9,424,216 (GRCm39)	H221Y	possibly damaging	Het
Col3a1	G	A	1: 45,379,112 (GRCm39)		probably benign	Het
Cpn2	T	G	16: 30,079,344 (GRCm39)	N119T	probably damaging	Het
Cspg4b	C	A	13: 113,504,882 (GRCm39)	Q2004K	probably damaging	Het
Cubn	T	A	2: 13,494,721 (GRCm39)	Q109H	probably benign	Het
Cyp26b1	A	G	6: 84,553,954 (GRCm39)	V221A	possibly damaging	Het
Cyp2e1	T	G	7: 140,350,030 (GRCm39)	N238K	probably damaging	Het
Dst	C	T	1: 34,247,669 (GRCm39)	A1693V	probably damaging	Het
Dync2li1	A	G	17: 84,956,683 (GRCm39)	Q281R	probably benign	Het
Enpp2	C	T	15: 54,745,543 (GRCm39)	G318S	probably damaging	Het
Entrep1	T	C	19: 23,950,789 (GRCm39)	*597W	probably null	Het
Fam227a	T	C	15: 79,521,262 (GRCm39)	H267R	possibly damaging	Het
Fam78a	G	A	2: 31,959,427 (GRCm39)	R228C	probably damaging	Het
Fbxw25	T	C	9: 109,480,705 (GRCm39)	N325S	possibly damaging	Het
Foxred1	T	C	9: 35,121,210 (GRCm39)		probably benign	Het
Fstl5	T	A	3: 76,496,272 (GRCm39)	V345E	probably damaging	Het
Fzd8	GAAAAACTCA	GA	18: 9,214,492 (GRCm39)		probably null	Het
Hand1	T	C	11: 57,722,078 (GRCm39)	R179G	possibly damaging	Het
Hk1	G	T	10: 62,194,165 (GRCm39)		probably benign	Het
Hmcn1	A	C	1: 150,598,286 (GRCm39)	L1672R	probably damaging	Het
Hps5	G	A	7: 46,418,775 (GRCm39)	Q297*	probably null	Het
Iars1	T	A	13: 49,871,460 (GRCm39)	F699I	probably benign	Het
Ift140	G	A	17: 25,267,462 (GRCm39)	G620E	probably benign	Het
Igkv4-80	A	C	6: 68,993,649 (GRCm39)	S81A	probably benign	Het
Inpp4a	T	G	1: 37,426,922 (GRCm39)	Y628D	possibly damaging	Het
Itk	C	T	11: 46,280,152 (GRCm39)	R29H	probably damaging	Het
Kcnv1	A	G	15: 44,972,644 (GRCm39)	F413S	probably damaging	Het
Klhl3	A	T	13: 58,250,231 (GRCm39)	Y4*	probably null	Het
Lonrf1	C	A	8: 36,701,103 (GRCm39)	C369F	probably damaging	Het
Magohb	A	T	6: 131,261,558 (GRCm39)		probably benign	Het
Map3k4	G	A	17: 12,490,787 (GRCm39)	R215C	probably damaging	Het
Map3k8	A	T	18: 4,339,548 (GRCm39)	S274R	possibly damaging	Het
Masp1	T	G	16: 23,283,826 (GRCm39)	M470L	probably damaging	Het
Mfng	C	T	15: 78,648,588 (GRCm39)	R163H	probably benign	Het
Muc4	A	T	16: 32,576,472 (GRCm39)		probably benign	Het
Myo1c	T	A	11: 75,562,676 (GRCm39)	V981E	probably damaging	Het
Nedd9	A	T	13: 41,492,411 (GRCm39)	I27K	probably damaging	Het
Nkd2	C	A	13: 73,970,841 (GRCm39)	G247V	probably damaging	Het
Nucb2	A	C	7: 116,139,199 (GRCm39)	Q398P	possibly damaging	Het
Numa1	T	A	7: 101,660,064 (GRCm39)	D376E	probably benign	Het
Or2w1	G	A	13: 21,317,241 (GRCm39)	V99I	probably benign	Het
Or4c101	C	T	2: 88,389,930 (GRCm39)	T39I	probably benign	Het
Or4n5	T	C	14: 50,133,206 (GRCm39)	T18A	probably benign	Het
Or4p23	A	T	2: 88,576,398 (GRCm39)	L278*	probably null	Het
Or4q3	C	T	14: 50,583,345 (GRCm39)	V185M	probably damaging	Het
Or5b119	G	A	19: 13,456,956 (GRCm39)	T202I	possibly damaging	Het
Or6c76b	A	T	10: 129,692,896 (GRCm39)	N170Y	possibly damaging	Het
Or8d23	A	T	9: 38,842,129 (GRCm39)	I221F	probably damaging	Het
Otx1	C	A	11: 21,947,037 (GRCm39)	A91S	probably damaging	Het
Pamr1	C	T	2: 102,472,549 (GRCm39)	T616I	probably benign	Het
Pcnx1	G	A	12: 82,038,599 (GRCm39)	V1955I	possibly damaging	Het
Pira13	A	G	7: 3,825,676 (GRCm39)	Y398H	probably damaging	Het
Plekha3	T	A	2: 76,510,571 (GRCm39)	D35E	possibly damaging	Het
Pnpla2	T	G	7: 141,038,085 (GRCm39)	N184K	probably damaging	Het
Polr3a	C	T	14: 24,502,692 (GRCm39)	E1216K	probably benign	Het
Ppp1r21	A	T	17: 88,852,803 (GRCm39)	S61C	probably damaging	Het
Ppp1r21	G	C	17: 88,852,804 (GRCm39)	S61T	probably damaging	Het
Prdm13	G	T	4: 21,678,223 (GRCm39)		probably benign	Het
Prss53	T	C	7: 127,487,879 (GRCm39)	N201S	probably benign	Het
Rab11fip2	A	G	19: 59,924,290 (GRCm39)	L338S	probably damaging	Het
Rad50	T	C	11: 53,575,102 (GRCm39)	N546S	probably benign	Het
Ralgapa1	T	C	12: 55,809,359 (GRCm39)	D472G	possibly damaging	Het
Rexo4	A	G	2: 26,850,346 (GRCm39)	I277T	probably damaging	Het
Rimbp2	C	T	5: 128,865,579 (GRCm39)	V590I	probably benign	Het
Ripor3	A	G	2: 167,824,736 (GRCm39)	V864A	probably benign	Het
Rnpc3	G	A	3: 113,418,628 (GRCm39)	H107Y	possibly damaging	Het
Ryr1	A	T	7: 28,767,520 (GRCm39)	D2927E	probably damaging	Het
Samd9l	G	A	6: 3,375,621 (GRCm39)	Q547*	probably null	Het
Scaper	T	C	9: 55,716,459 (GRCm39)	E724G	probably damaging	Het
Secisbp2l	C	T	2: 125,582,409 (GRCm39)	V1016I	probably damaging	Het
Selenoo	T	A	15: 88,982,970 (GRCm39)	M499K	probably damaging	Het
Sema4a	T	A	3: 88,345,568 (GRCm39)	D505V	probably damaging	Het
Sema5a	T	C	15: 32,679,310 (GRCm39)	M863T	probably damaging	Het
Slc24a5	T	C	2: 124,929,940 (GRCm39)	C414R	probably damaging	Het
Slc34a2	A	G	5: 53,224,942 (GRCm39)	D361G	probably damaging	Het
Slc5a1	T	C	5: 33,261,858 (GRCm39)	Y20H	probably benign	Het
Slx4ip	A	T	2: 136,910,267 (GRCm39)		probably benign	Het
Snx14	T	A	9: 88,280,341 (GRCm39)	E538V	probably damaging	Het
Sspo	C	A	6: 48,442,486 (GRCm39)	L1994I	probably damaging	Het
St13	G	C	15: 81,283,786 (GRCm39)	R4G	probably benign	Het
Stap2	A	G	17: 56,304,901 (GRCm39)	S294P	possibly damaging	Het
Stat1	C	A	1: 52,193,082 (GRCm39)	Y651*	probably null	Het
Syne2	A	G	12: 75,946,046 (GRCm39)	T373A	probably benign	Het
Tacc2	A	G	7: 130,330,318 (GRCm39)	S201G	probably damaging	Het
Tdpoz3	G	A	3: 93,734,287 (GRCm39)	E321K	probably benign	Het
Thumpd1	T	C	7: 119,316,002 (GRCm39)	T316A	probably benign	Het
Tlr3	A	T	8: 45,850,072 (GRCm39)	C866S	probably benign	Het
Tmprss11g	T	A	5: 86,644,401 (GRCm39)	I148F	probably benign	Het
Topbp1	T	A	9: 103,205,568 (GRCm39)		probably benign	Het
Tpm1	T	C	9: 66,935,331 (GRCm39)		probably null	Het
Traf3ip2	T	A	10: 39,502,096 (GRCm39)	S81R	probably damaging	Het
Trim29	T	A	9: 43,222,265 (GRCm39)	N31K	probably benign	Het
Ubn2	C	T	6: 38,467,433 (GRCm39)	P563S	probably benign	Het
Usp24	T	C	4: 106,283,743 (GRCm39)	Y2418H	probably benign	Het
Vmn2r6	T	A	3: 64,463,766 (GRCm39)	D267V	probably damaging	Het
Wapl	T	A	14: 34,414,052 (GRCm39)	C305S	probably benign	Het
Yme1l1	C	A	2: 23,058,333 (GRCm39)	S155*	probably null	Het
Ythdf3	T	A	3: 16,258,220 (GRCm39)	H126Q	probably damaging	Het
Zbtb32	A	T	7: 30,290,678 (GRCm39)	C206S	possibly damaging	Het
Zbtb47	T	C	9: 121,593,045 (GRCm39)	V455A	probably damaging	Het
Zfp518a	A	T	19: 40,902,707 (GRCm39)	I879F	probably benign	Het
Zfp938	A	T	10: 82,062,012 (GRCm39)	Y203N	possibly damaging	Het

Other mutations in F13a1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01304:F13a1	APN	13	37,172,852 (GRCm39)	missense	probably benign	0.11
IGL01444:F13a1	APN	13	37,102,551 (GRCm39)	missense	probably null	1.00
IGL02188:F13a1	APN	13	37,090,035 (GRCm39)	splice site	probably benign
IGL02591:F13a1	APN	13	37,082,031 (GRCm39)	missense	probably damaging	1.00
IGL02660:F13a1	APN	13	37,127,868 (GRCm39)	missense	possibly damaging	0.92
IGL03244:F13a1	APN	13	37,172,870 (GRCm39)	missense	possibly damaging	0.82
IGL03401:F13a1	APN	13	37,082,054 (GRCm39)	missense	probably benign	0.00
F6893:F13a1	UTSW	13	37,155,999 (GRCm39)	missense	probably damaging	1.00
R0082:F13a1	UTSW	13	37,172,927 (GRCm39)	missense	probably damaging	0.99
R0657:F13a1	UTSW	13	37,152,079 (GRCm39)	missense	probably damaging	0.96
R1225:F13a1	UTSW	13	37,209,825 (GRCm39)	missense	probably benign
R1430:F13a1	UTSW	13	37,082,105 (GRCm39)	missense	probably damaging	1.00
R1608:F13a1	UTSW	13	37,052,785 (GRCm39)	missense	probably damaging	1.00
R1883:F13a1	UTSW	13	37,172,981 (GRCm39)	missense	probably benign	0.01
R2115:F13a1	UTSW	13	37,172,831 (GRCm39)	missense	probably damaging	1.00
R2121:F13a1	UTSW	13	37,209,653 (GRCm39)	missense	probably benign	0.01
R2122:F13a1	UTSW	13	37,209,653 (GRCm39)	missense	probably benign	0.01
R2125:F13a1	UTSW	13	37,076,815 (GRCm39)	missense	probably benign	0.15
R2392:F13a1	UTSW	13	37,127,971 (GRCm39)	missense	possibly damaging	0.65
R3618:F13a1	UTSW	13	37,127,967 (GRCm39)	missense	probably damaging	1.00
R3625:F13a1	UTSW	13	37,082,067 (GRCm39)	missense	probably benign	0.31
R3772:F13a1	UTSW	13	37,082,108 (GRCm39)	missense	probably benign
R3838:F13a1	UTSW	13	37,231,398 (GRCm39)	missense	probably damaging	1.00
R3857:F13a1	UTSW	13	37,209,668 (GRCm39)	missense	probably benign	0.32
R3937:F13a1	UTSW	13	37,100,875 (GRCm39)	missense	probably damaging	1.00
R4974:F13a1	UTSW	13	37,100,837 (GRCm39)	critical splice donor site	probably null
R5033:F13a1	UTSW	13	37,172,830 (GRCm39)	missense	probably damaging	1.00
R5194:F13a1	UTSW	13	37,156,037 (GRCm39)	missense	probably damaging	1.00
R5740:F13a1	UTSW	13	37,082,178 (GRCm39)	missense	probably benign	0.02
R5753:F13a1	UTSW	13	37,082,082 (GRCm39)	nonsense	probably null
R6188:F13a1	UTSW	13	37,209,752 (GRCm39)	missense	probably benign	0.12
R7048:F13a1	UTSW	13	37,082,117 (GRCm39)	missense	probably benign	0.02
R7197:F13a1	UTSW	13	37,100,860 (GRCm39)	missense	probably damaging	1.00
R7816:F13a1	UTSW	13	37,209,745 (GRCm39)	missense	probably benign	0.00
R7843:F13a1	UTSW	13	37,209,745 (GRCm39)	missense	probably benign	0.00
R7902:F13a1	UTSW	13	37,172,913 (GRCm39)	missense	probably damaging	1.00
R8124:F13a1	UTSW	13	37,209,779 (GRCm39)	missense	probably damaging	1.00
R8443:F13a1	UTSW	13	37,209,692 (GRCm39)	missense	probably damaging	1.00
R8856:F13a1	UTSW	13	37,100,859 (GRCm39)	missense	probably damaging	1.00
R8864:F13a1	UTSW	13	37,061,753 (GRCm39)	missense	probably damaging	1.00
R9026:F13a1	UTSW	13	37,102,506 (GRCm39)	missense	probably null	1.00
R9092:F13a1	UTSW	13	37,089,993 (GRCm39)	missense	probably benign	0.17
R9268:F13a1	UTSW	13	37,076,910 (GRCm39)	missense	probably benign	0.00
R9274:F13a1	UTSW	13	37,052,761 (GRCm39)	missense	probably damaging	1.00
R9497:F13a1	UTSW	13	37,082,118 (GRCm39)	missense	probably benign	0.05
R9645:F13a1	UTSW	13	37,082,154 (GRCm39)	missense	probably benign
Z1088:F13a1	UTSW	13	37,172,986 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- AGTGTTAGACCCACCCTGTTTC -3'
(R):5'- CAGAAATGTTGTGCTGTGGC -3'

Sequencing Primer
(F):5'- CTATCTATCGATGTAAGAGATAGGCG -3'
(R):5'- GCTAATGAGCTGTGTTGTCATCTAAC -3'

Posted On

2016-04-15