Incidental Mutation 'R4953:Pign'
ID 381347
Institutional Source Beutler Lab
Gene Symbol Pign
Ensembl Gene ENSMUSG00000056536
Gene Name phosphatidylinositol glycan anchor biosynthesis, class N
Synonyms
MMRRC Submission 042550-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.844) question?
Stock # R4953 (G1)
Quality Score 225
Status Validated
Chromosome 1
Chromosomal Location 105446147-105591402 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 105572227 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tryptophan to Arginine at position 314 (W314R)
Ref Sequence ENSEMBL: ENSMUSP00000140020 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000070699] [ENSMUST00000186485] [ENSMUST00000187537] [ENSMUST00000190811]
AlphaFold no structure available at present
Predicted Effect probably benign
Transcript: ENSMUST00000070699
AA Change: W314R

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000069969
Gene: ENSMUSG00000056536
AA Change: W314R

DomainStartEndE-ValueType
transmembrane domain 2 24 N/A INTRINSIC
Pfam:Phosphodiest 116 303 1.2e-10 PFAM
Pfam:Sulfatase 148 334 2.1e-8 PFAM
low complexity region 382 393 N/A INTRINSIC
Pfam:PigN 430 884 2.3e-138 PFAM
transmembrane domain 893 915 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000185983
Predicted Effect probably benign
Transcript: ENSMUST00000186485
AA Change: W314R

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000139638
Gene: ENSMUSG00000056536
AA Change: W314R

DomainStartEndE-ValueType
transmembrane domain 2 24 N/A INTRINSIC
Pfam:Phosphodiest 109 330 3.7e-11 PFAM
Pfam:Sulfatase 148 334 2.1e-8 PFAM
low complexity region 382 393 N/A INTRINSIC
Pfam:PigN 430 884 1.5e-141 PFAM
transmembrane domain 893 915 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000187537
AA Change: W314R

PolyPhen 2 Score 0.325 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000140020
Gene: ENSMUSG00000056536
AA Change: W314R

DomainStartEndE-ValueType
signal peptide 1 16 N/A INTRINSIC
Pfam:Phosphodiest 46 331 1.2e-12 PFAM
Pfam:Sulfatase 146 334 2.9e-6 PFAM
low complexity region 382 393 N/A INTRINSIC
Pfam:PigN 430 800 5.9e-86 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000188858
Predicted Effect probably benign
Transcript: ENSMUST00000190811
AA Change: W314R

PolyPhen 2 Score 0.216 (Sensitivity: 0.91; Specificity: 0.88)
SMART Domains Protein: ENSMUSP00000140844
Gene: ENSMUSG00000056536
AA Change: W314R

DomainStartEndE-ValueType
signal peptide 1 16 N/A INTRINSIC
Pfam:Phosphodiest 46 331 1.1e-12 PFAM
Pfam:Sulfatase 146 334 2.8e-6 PFAM
low complexity region 382 393 N/A INTRINSIC
Pfam:PigN 430 794 4.4e-86 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000191408
Meta Mutation Damage Score 0.2144 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.4%
  • 10x: 96.5%
  • 20x: 93.0%
Validation Efficiency 97% (113/116)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that is involved in glycosylphosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is a glycolipid found on many blood cells and serves to anchor proteins to the cell surface. This protein is expressed in the endoplasmic reticulum and transfers phosphoethanolamine (EtNP) to the first mannose of the GPI anchor. Two alternatively spliced variants, which encode an identical isoform, have been reported. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for an ENU-induced allele exhibit abnormal gastrulation, forebrain hypoplasia, coloboma, and microphthalmia. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 97 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acad9 T C 3: 36,128,525 (GRCm39) Y129H probably damaging Het
Adcy4 C T 14: 56,016,486 (GRCm39) D322N probably damaging Het
Adgre1 G A 17: 57,748,321 (GRCm39) G507E probably damaging Het
Agpat5 G A 8: 18,918,971 (GRCm39) V118I probably benign Het
Aif1 T C 17: 35,390,074 (GRCm39) probably null Het
Akr1c6 A T 13: 4,488,608 (GRCm39) probably null Het
Akt2 T A 7: 27,337,597 (GRCm39) probably null Het
Ankrd35 T A 3: 96,590,989 (GRCm39) L425Q possibly damaging Het
Arhgap40 A G 2: 158,385,326 (GRCm39) T520A possibly damaging Het
Arhgef28 T A 13: 98,066,062 (GRCm39) D1597V possibly damaging Het
Aspm A G 1: 139,399,472 (GRCm39) D1079G probably benign Het
Atp1a2 A T 1: 172,119,009 (GRCm39) probably benign Het
Cage1 C A 13: 38,207,406 (GRCm39) E252D possibly damaging Het
Ccdc185 A G 1: 182,576,582 (GRCm39) S36P possibly damaging Het
Cd300a T C 11: 114,784,247 (GRCm39) V85A probably damaging Het
Cd38 A C 5: 44,064,887 (GRCm39) D235A possibly damaging Het
Cdcp1 T C 9: 123,009,088 (GRCm39) K530R probably benign Het
Ceacam20 T A 7: 19,705,651 (GRCm39) L214Q probably damaging Het
Cntn4 G A 6: 106,502,379 (GRCm39) A379T probably benign Het
Col4a2 A T 8: 11,479,505 (GRCm39) E796V probably benign Het
Copa A G 1: 171,910,453 (GRCm39) probably benign Het
Cpa5 A G 6: 30,631,363 (GRCm39) T426A possibly damaging Het
Csmd1 A G 8: 16,249,931 (GRCm39) F1016L probably damaging Het
Cyb5r3 A T 15: 83,042,822 (GRCm39) L290* probably null Het
Ddx42 A G 11: 106,133,766 (GRCm39) T581A probably damaging Het
Deaf1 C T 7: 140,902,381 (GRCm39) G221S probably damaging Het
Dnah6 A G 6: 73,165,366 (GRCm39) S580P probably benign Het
Dock1 A G 7: 134,754,017 (GRCm39) E1598G probably benign Het
Drg2 T C 11: 60,350,262 (GRCm39) probably benign Het
Eif3f C A 7: 108,533,847 (GRCm39) probably benign Het
Fam184a G T 10: 53,574,901 (GRCm39) T236K probably benign Het
Gas7 C T 11: 67,550,876 (GRCm39) T126M possibly damaging Het
Gckr T G 5: 31,465,608 (GRCm39) F408C probably damaging Het
Gm17472 A G 6: 42,958,004 (GRCm39) D91G probably damaging Het
Gm5117 G A 8: 32,228,608 (GRCm39) noncoding transcript Het
Gsto1 T A 19: 47,843,759 (GRCm39) I47N probably damaging Het
Hck C T 2: 152,976,597 (GRCm39) P244S probably damaging Het
Hif3a T C 7: 16,784,490 (GRCm39) T250A probably damaging Het
Hmcn1 A T 1: 150,752,111 (GRCm39) probably benign Het
Impa1 G A 3: 10,380,340 (GRCm39) S247F probably damaging Het
Ints14 G C 9: 64,889,340 (GRCm39) R397P probably damaging Het
Iqgap1 T C 7: 80,373,524 (GRCm39) probably null Het
Krt1c T C 15: 101,722,377 (GRCm39) K436R probably damaging Het
Lama3 G A 18: 12,581,362 (GRCm39) C607Y probably damaging Het
Loxl4 G T 19: 42,599,133 (GRCm39) probably benign Het
Lrrc8d C T 5: 105,961,234 (GRCm39) T548M probably damaging Het
Man1b1 T A 2: 25,228,196 (GRCm39) D155E probably damaging Het
Mapk8ip2 C T 15: 89,341,431 (GRCm39) P214L probably benign Het
Mast1 G A 8: 85,645,357 (GRCm39) T696I probably damaging Het
Muc15 C T 2: 110,561,617 (GRCm39) P18S probably damaging Het
Mybl2 T C 2: 162,922,716 (GRCm39) S205P probably damaging Het
Mylk T C 16: 34,809,331 (GRCm39) S1763P probably damaging Het
Nek10 T A 14: 14,860,986 (GRCm38) L513M possibly damaging Het
Nfib A G 4: 82,271,808 (GRCm39) M252T probably benign Het
Nid2 C A 14: 19,828,146 (GRCm39) Y261* probably null Het
Nmd3 C T 3: 69,638,970 (GRCm39) R187C possibly damaging Het
Nomo1 G T 7: 45,700,155 (GRCm39) probably benign Het
Npy4r A G 14: 33,868,437 (GRCm39) F284L probably damaging Het
Nt5dc2 T C 14: 30,860,878 (GRCm39) V351A possibly damaging Het
Ofcc1 G A 13: 40,168,864 (GRCm39) T841I probably damaging Het
Or5b121 T A 19: 13,507,178 (GRCm39) L91Q probably null Het
Or5g27 T A 2: 85,410,069 (GRCm39) L162* probably null Het
Pcdhb12 T A 18: 37,569,209 (GRCm39) D118E probably damaging Het
Pdcd11 C T 19: 47,116,404 (GRCm39) T1518I probably benign Het
Pde6a T A 18: 61,364,434 (GRCm39) C163* probably null Het
Pip5k1b T A 19: 24,367,799 (GRCm39) H76L probably damaging Het
Plcz1 T C 6: 139,974,277 (GRCm39) N55S possibly damaging Het
Pou5f1 A T 17: 35,821,438 (GRCm39) H350L possibly damaging Het
Rchy1 A T 5: 92,110,487 (GRCm39) probably null Het
Ric8b A G 10: 84,793,946 (GRCm39) T270A possibly damaging Het
Rprml A G 11: 103,540,644 (GRCm39) E13G probably benign Het
Secisbp2 T A 13: 51,836,063 (GRCm39) I719N probably damaging Het
Sergef C T 7: 46,283,259 (GRCm39) R148H probably benign Het
Serpina6 T A 12: 103,618,221 (GRCm39) probably null Het
Sirpb1b C A 3: 15,613,887 (GRCm39) W65L probably damaging Het
Slc32a1 A T 2: 158,455,977 (GRCm39) I211F possibly damaging Het
Slc5a9 C A 4: 111,748,941 (GRCm39) probably null Het
Smarce1 A G 11: 99,105,977 (GRCm39) V226A probably benign Het
Spata31d1b A T 13: 59,864,097 (GRCm39) E415V probably damaging Het
Speg G A 1: 75,400,508 (GRCm39) R2556H possibly damaging Het
Suclg2 A C 6: 95,543,417 (GRCm39) V338G probably damaging Het
Tarbp1 T C 8: 127,174,184 (GRCm39) E874G possibly damaging Het
Tex14 G T 11: 87,427,727 (GRCm39) probably null Het
Trim36 T A 18: 46,329,245 (GRCm39) D53V possibly damaging Het
Tsga10ip T A 19: 5,444,368 (GRCm39) Y21F possibly damaging Het
Ttn C T 2: 76,620,289 (GRCm39) V15849M probably damaging Het
Ube3b T C 5: 114,539,471 (GRCm39) S421P probably benign Het
Unc5a A T 13: 55,147,683 (GRCm39) M498L probably benign Het
Vipr2 A G 12: 116,107,876 (GRCm39) I420M probably benign Het
Vmn1r179 T A 7: 23,628,515 (GRCm39) H235Q probably damaging Het
Vps35 T A 8: 86,008,475 (GRCm39) I267F probably damaging Het
Wdr26 G A 1: 181,025,216 (GRCm39) R279W probably damaging Het
Xpo6 C A 7: 125,768,443 (GRCm39) R88L probably damaging Het
Zdhhc1 CGGGGG CGGGGGG 8: 106,210,376 (GRCm39) probably null Het
Zfp105 T A 9: 122,758,880 (GRCm39) S184T probably benign Het
Zfp574 G A 7: 24,780,388 (GRCm39) R470H probably damaging Het
Zswim9 T A 7: 13,003,484 (GRCm39) H122L probably damaging Het
Other mutations in Pign
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00485:Pign APN 1 105,525,448 (GRCm39) nonsense probably null
IGL00770:Pign APN 1 105,525,481 (GRCm39) missense probably benign 0.00
IGL00774:Pign APN 1 105,525,481 (GRCm39) missense probably benign 0.00
IGL00828:Pign APN 1 105,481,845 (GRCm39) missense probably damaging 0.97
IGL01407:Pign APN 1 105,517,027 (GRCm39) missense probably benign 0.06
IGL01523:Pign APN 1 105,580,903 (GRCm39) missense probably damaging 0.98
IGL01953:Pign APN 1 105,516,764 (GRCm39) splice site probably benign
IGL02389:Pign APN 1 105,574,506 (GRCm39) nonsense probably null
PIT4810001:Pign UTSW 1 105,525,487 (GRCm39) missense possibly damaging 0.83
R0080:Pign UTSW 1 105,480,130 (GRCm39) missense probably damaging 1.00
R0097:Pign UTSW 1 105,515,701 (GRCm39) splice site probably benign
R0302:Pign UTSW 1 105,516,818 (GRCm39) missense possibly damaging 0.83
R0573:Pign UTSW 1 105,580,902 (GRCm39) missense probably damaging 1.00
R0580:Pign UTSW 1 105,519,419 (GRCm39) missense probably benign 0.03
R0946:Pign UTSW 1 105,519,422 (GRCm39) missense probably benign 0.00
R1397:Pign UTSW 1 105,585,496 (GRCm39) missense probably damaging 1.00
R1462:Pign UTSW 1 105,512,727 (GRCm39) missense possibly damaging 0.95
R1462:Pign UTSW 1 105,512,727 (GRCm39) missense possibly damaging 0.95
R1751:Pign UTSW 1 105,580,917 (GRCm39) missense probably benign 0.19
R1753:Pign UTSW 1 105,517,042 (GRCm39) missense possibly damaging 0.65
R1767:Pign UTSW 1 105,580,917 (GRCm39) missense probably benign 0.19
R1854:Pign UTSW 1 105,482,223 (GRCm39) missense probably damaging 0.99
R1907:Pign UTSW 1 105,565,940 (GRCm39) missense possibly damaging 0.50
R2845:Pign UTSW 1 105,585,521 (GRCm39) missense possibly damaging 0.80
R2846:Pign UTSW 1 105,585,521 (GRCm39) missense possibly damaging 0.80
R3718:Pign UTSW 1 105,577,006 (GRCm39) critical splice donor site probably null
R3970:Pign UTSW 1 105,583,728 (GRCm39) missense probably damaging 1.00
R4067:Pign UTSW 1 105,515,703 (GRCm39) critical splice donor site probably null
R4110:Pign UTSW 1 105,481,540 (GRCm39) unclassified probably benign
R4387:Pign UTSW 1 105,449,785 (GRCm39) missense possibly damaging 0.48
R4393:Pign UTSW 1 105,449,751 (GRCm39) missense probably benign 0.00
R4472:Pign UTSW 1 105,575,945 (GRCm39) missense probably benign 0.29
R4519:Pign UTSW 1 105,525,391 (GRCm39) critical splice donor site probably null
R4619:Pign UTSW 1 105,449,715 (GRCm39) utr 3 prime probably benign
R4746:Pign UTSW 1 105,512,749 (GRCm39) missense probably benign 0.33
R4859:Pign UTSW 1 105,575,892 (GRCm39) nonsense probably null
R4893:Pign UTSW 1 105,574,436 (GRCm39) missense probably damaging 1.00
R5046:Pign UTSW 1 105,449,798 (GRCm39) missense possibly damaging 0.94
R5377:Pign UTSW 1 105,585,537 (GRCm39) missense probably benign 0.12
R5388:Pign UTSW 1 105,583,695 (GRCm39) missense probably damaging 1.00
R5482:Pign UTSW 1 105,474,435 (GRCm39) missense probably benign 0.44
R5594:Pign UTSW 1 105,574,594 (GRCm39) intron probably benign
R5639:Pign UTSW 1 105,517,040 (GRCm39) missense probably benign 0.09
R5778:Pign UTSW 1 105,519,447 (GRCm39) missense probably damaging 1.00
R5821:Pign UTSW 1 105,516,788 (GRCm39) missense possibly damaging 0.95
R5928:Pign UTSW 1 105,485,792 (GRCm39) missense possibly damaging 0.55
R5979:Pign UTSW 1 105,516,999 (GRCm39) missense probably benign 0.01
R6213:Pign UTSW 1 105,516,991 (GRCm39) missense possibly damaging 0.50
R6292:Pign UTSW 1 105,512,802 (GRCm39) missense possibly damaging 0.69
R6343:Pign UTSW 1 105,512,820 (GRCm39) missense probably benign 0.33
R6566:Pign UTSW 1 105,565,906 (GRCm39) critical splice donor site probably null
R6856:Pign UTSW 1 105,481,620 (GRCm39) nonsense probably null
R6954:Pign UTSW 1 105,481,622 (GRCm39) missense probably benign 0.39
R7361:Pign UTSW 1 105,512,778 (GRCm39) missense probably benign 0.01
R7582:Pign UTSW 1 105,577,092 (GRCm39) missense probably benign 0.00
R7622:Pign UTSW 1 105,575,842 (GRCm39) missense possibly damaging 0.65
R7742:Pign UTSW 1 105,480,122 (GRCm39) missense probably benign
R7892:Pign UTSW 1 105,585,401 (GRCm39) missense probably benign 0.01
R8273:Pign UTSW 1 105,516,803 (GRCm39) missense probably benign 0.00
R8352:Pign UTSW 1 105,575,917 (GRCm39) missense probably benign 0.35
R8452:Pign UTSW 1 105,575,917 (GRCm39) missense probably benign 0.35
R8826:Pign UTSW 1 105,481,827 (GRCm39) missense probably damaging 1.00
R8841:Pign UTSW 1 105,485,634 (GRCm39) intron probably benign
R8886:Pign UTSW 1 105,512,779 (GRCm39) missense probably benign
R8904:Pign UTSW 1 105,519,359 (GRCm39) missense possibly damaging 0.87
R9074:Pign UTSW 1 105,556,246 (GRCm39) missense unknown
R9197:Pign UTSW 1 105,516,818 (GRCm39) missense probably benign 0.03
R9630:Pign UTSW 1 105,481,591 (GRCm39) missense probably benign 0.23
R9702:Pign UTSW 1 105,485,212 (GRCm39) missense probably damaging 1.00
X0025:Pign UTSW 1 105,585,359 (GRCm39) missense probably benign 0.03
Z1177:Pign UTSW 1 105,585,545 (GRCm39) start codon destroyed probably null 0.98
Predicted Primers PCR Primer
(F):5'- GGCACAAGATTAGTCAGGCC -3'
(R):5'- GTAGCCTTGCTGACAGTTGC -3'

Sequencing Primer
(F):5'- GATTAGTCAGGCCAAAGCACTCG -3'
(R):5'- TGTCCAGCACTCCTGAAA -3'
Posted On 2016-04-27