Mutagenetix > Incidental Mutation

Incidental Mutation 'R4957:Tnfrsf1b'

381639

Institutional Source

Beutler Lab

Gene Symbol

Tnfrsf1b

Ensembl Gene

ENSMUSG00000028599

Gene Name

tumor necrosis factor receptor superfamily, member 1b

Synonyms

CD120b, TNFBR, TNFR80, p75, TNFalpha-R2, TNFRII, p75 TNFR, TNF-R2, TNF-R-II, TNF-alphaR2, Tnfr2, TNF-R75

MMRRC Submission

042554-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.216) question?

Stock #

R4957 (G1)

Quality Score

131

Status

Validated

Chromosome

Chromosomal Location

144940033-144973440 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 144973327 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Histidine at position 15 (Q15H)

Ref Sequence

ENSEMBL: ENSMUSP00000030336 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030336] [ENSMUST00000143055]

AlphaFold

P25119

Predicted Effect

probably damaging
Transcript: ENSMUST00000030336
AA Change: Q15H

PolyPhen 2 Score 0.986 (Sensitivity: 0.74; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000030336
Gene: ENSMUSG00000028599
AA Change: Q15H

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
TNFR	40	76	2.15e-9	SMART
TNFR	79	119	2.19e-10	SMART
TNFR	121	163	7.27e-7	SMART
TNFR	166	202	2.22e-2	SMART
transmembrane domain	263	285	N/A	INTRINSIC
low complexity region	324	338	N/A	INTRINSIC
low complexity region	363	378	N/A	INTRINSIC
low complexity region	390	405	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000143055
AA Change: Q15H

PolyPhen 2 Score 0.969 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000115702
Gene: ENSMUSG00000028599
AA Change: Q15H

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.3%
20x: 92.5%

Validation Efficiency

99% (80/81)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the TNF-receptor superfamily. This protein and TNF-receptor 1 form a heterocomplex that mediates the recruitment of two anti-apoptotic proteins, c-IAP1 and c-IAP2, which possess E3 ubiquitin ligase activity. The function of IAPs in TNF-receptor signalling is unknown, however, c-IAP1 is thought to potentiate TNF-induced apoptosis by the ubiquitination and degradation of TNF-receptor-associated factor 2, which mediates anti-apoptotic signals. Knockout studies in mice also suggest a role of this protein in protecting neurons from apoptosis by stimulating antioxidative pathways. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygotes for targeted null mutations exhibit altered inflammatory responses in a variety of experimental conditions, impaired recovery from spinal cord injury, enhanced ischemia-reperfusion-induced retinal damage, and resistance to cerebral malaria. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3110009E18Rik	G	C	1: 120,096,840 (GRCm39)		probably benign	Het
3110009E18Rik	C	T	1: 120,096,850 (GRCm39)		probably benign	Het
3110009E18Rik	G	T	1: 120,096,849 (GRCm39)		probably benign	Het
6820408C15Rik	T	A	2: 152,286,013 (GRCm39)	V342D	probably damaging	Het
Arhgap33	C	T	7: 30,231,786 (GRCm39)	G101R	probably damaging	Het
Atf7ip	C	T	6: 136,583,808 (GRCm39)	R1280C	probably damaging	Het
Cacnb4	T	C	2: 52,448,303 (GRCm39)	H8R	probably damaging	Het
Ccdc150	T	A	1: 54,404,027 (GRCm39)		probably benign	Het
Cd74	A	G	18: 60,942,109 (GRCm39)	N113D	probably benign	Het
Cdc25b	T	C	2: 131,035,525 (GRCm39)	V341A	possibly damaging	Het
Clptm1l	T	A	13: 73,759,315 (GRCm39)	I245N	possibly damaging	Het
Clptm1l	T	C	13: 73,760,547 (GRCm39)	I310T	probably damaging	Het
Creb5	A	T	6: 53,670,907 (GRCm39)		probably null	Het
Crebbp	T	C	16: 3,935,231 (GRCm39)	Q460R	probably benign	Het
Dnah17	A	T	11: 117,965,124 (GRCm39)	I2306N	probably benign	Het
Dync1h1	C	A	12: 110,624,560 (GRCm39)	T3700N	probably damaging	Het
Elovl1	A	T	4: 118,289,120 (GRCm39)	H215L	probably damaging	Het
Enkd1	A	G	8: 106,431,121 (GRCm39)	I202T	probably benign	Het
Epha7	C	T	4: 28,871,892 (GRCm39)	A407V	probably damaging	Het
Ercc3	G	T	18: 32,376,170 (GRCm39)	G130W	probably damaging	Het
Fbxl8	A	G	8: 105,994,827 (GRCm39)	E113G	probably damaging	Het
Frmpd1	T	G	4: 45,273,099 (GRCm39)	N339K	probably damaging	Het
Frrs1	G	A	3: 116,678,897 (GRCm39)	D240N	probably benign	Het
Gemin2	A	G	12: 59,063,954 (GRCm39)	S105G	probably benign	Het
Glra1	T	A	11: 55,418,224 (GRCm39)	I257F	probably damaging	Het
Gmcl1	G	A	6: 86,687,503 (GRCm39)	P354S	probably damaging	Het
Gpr15	G	T	16: 58,538,537 (GRCm39)	A184E	probably damaging	Het
Grm7	G	A	6: 111,335,824 (GRCm39)	G745E	probably damaging	Het
H2-T10	T	A	17: 36,428,308 (GRCm39)		probably benign	Het
Hdac5	C	A	11: 102,096,082 (GRCm39)		probably benign	Het
Ift22	G	A	5: 136,937,070 (GRCm39)		probably benign	Het
Ighg3	T	C	12: 113,324,750 (GRCm39)	E34G	unknown	Het
Itga11	A	T	9: 62,674,930 (GRCm39)	T821S	probably benign	Het
Lmod2	T	C	6: 24,603,871 (GRCm39)	V282A	possibly damaging	Het
Maml2	A	G	9: 13,531,572 (GRCm39)	K262R	probably damaging	Het
Mme	T	A	3: 63,250,910 (GRCm39)		probably benign	Het
Mnat1	A	G	12: 73,170,652 (GRCm39)	Y14C	probably damaging	Het
Mtdh	A	T	15: 34,083,281 (GRCm39)	T34S	possibly damaging	Het
Ncaph	T	C	2: 126,963,177 (GRCm39)	D352G	possibly damaging	Het
Or2t43	A	G	11: 58,457,344 (GRCm39)	Y276H	probably damaging	Het
Or4f17-ps1	C	A	2: 111,358,569 (GRCm39)	N321K	probably benign	Het
Or5m9b	T	A	2: 85,905,854 (GRCm39)	Y257N	probably damaging	Het
Or9g8	T	C	2: 85,607,459 (GRCm39)	F177S	probably damaging	Het
Pcdhb13	T	A	18: 37,577,837 (GRCm39)	D738E	possibly damaging	Het
Pla2g4f	C	T	2: 120,130,980 (GRCm39)	R825Q	probably benign	Het
Pnliprp2	C	T	19: 58,763,577 (GRCm39)	L409F	possibly damaging	Het
Prlr	G	T	15: 10,319,281 (GRCm39)	C70F	probably damaging	Het
Ptpn14	C	T	1: 189,583,469 (GRCm39)	T772I	probably benign	Het
Ryr2	T	C	13: 11,799,966 (GRCm39)	Q927R	probably damaging	Het
Scarf1	A	G	11: 75,416,460 (GRCm39)	E634G	probably benign	Het
Scart1	T	C	7: 139,808,435 (GRCm39)	V782A	probably damaging	Het
Skic3	T	G	13: 76,333,232 (GRCm39)		probably null	Het
Slc39a14	A	T	14: 70,553,260 (GRCm39)	S158R	probably damaging	Het
Slc9c1	A	T	16: 45,365,194 (GRCm39)	T176S	probably benign	Het
Srsf10	T	C	4: 135,583,541 (GRCm39)	S2P	probably damaging	Het
Tcam1	T	A	11: 106,173,705 (GRCm39)	C50S	probably damaging	Het
Tcf7l2	A	G	19: 55,919,864 (GRCm39)		probably null	Het
Tdrd3	T	A	14: 87,743,223 (GRCm39)	H390Q	probably benign	Het
Tlk2	T	C	11: 105,144,185 (GRCm39)		probably null	Het
Tnc	G	C	4: 63,894,793 (GRCm39)	P1531R	probably damaging	Het
Tssk4	A	T	14: 55,889,266 (GRCm39)	E264V	probably damaging	Het
Ugt3a1	G	A	15: 9,365,274 (GRCm39)	V296I	probably benign	Het
Usp5	C	G	6: 124,799,593 (GRCm39)	K318N	possibly damaging	Het
Vmn2r8	T	G	5: 108,947,129 (GRCm39)	E541A	probably benign	Het
Ybx1	A	T	4: 119,136,135 (GRCm39)		probably benign	Het
Zfp39	T	A	11: 58,782,057 (GRCm39)	Y235F	possibly damaging	Het
Zfp422	T	A	6: 116,603,904 (GRCm39)	K32*	probably null	Het
Zpbp2	T	A	11: 98,442,150 (GRCm39)		probably null	Het

Other mutations in Tnfrsf1b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01375:Tnfrsf1b	APN	4	144,951,986 (GRCm39)	missense	probably damaging	1.00
IGL01716:Tnfrsf1b	APN	4	144,942,493 (GRCm39)	missense	probably damaging	0.97
IGL01974:Tnfrsf1b	APN	4	144,942,421 (GRCm39)	missense	probably damaging	1.00
IGL02631:Tnfrsf1b	APN	4	144,951,398 (GRCm39)	missense	probably damaging	1.00
R0011:Tnfrsf1b	UTSW	4	144,949,536 (GRCm39)	missense	possibly damaging	0.77
R0135:Tnfrsf1b	UTSW	4	144,955,616 (GRCm39)	missense	probably benign	0.15
R0194:Tnfrsf1b	UTSW	4	144,951,382 (GRCm39)	missense	probably benign	0.04
R0761:Tnfrsf1b	UTSW	4	144,942,670 (GRCm39)	missense	possibly damaging	0.95
R1124:Tnfrsf1b	UTSW	4	144,950,926 (GRCm39)	missense	probably benign	0.23
R1696:Tnfrsf1b	UTSW	4	144,954,044 (GRCm39)	missense	probably benign
R3692:Tnfrsf1b	UTSW	4	144,954,092 (GRCm39)	missense	probably benign	0.01
R4248:Tnfrsf1b	UTSW	4	144,942,535 (GRCm39)	missense	probably benign	0.01
R4409:Tnfrsf1b	UTSW	4	144,950,855 (GRCm39)	nonsense	probably null
R4957:Tnfrsf1b	UTSW	4	144,973,328 (GRCm39)	missense	possibly damaging	0.90
R5180:Tnfrsf1b	UTSW	4	144,954,067 (GRCm39)	missense	probably damaging	1.00
R5425:Tnfrsf1b	UTSW	4	144,955,678 (GRCm39)	critical splice acceptor site	probably null
R6163:Tnfrsf1b	UTSW	4	144,946,477 (GRCm39)	missense	probably benign	0.24
R7055:Tnfrsf1b	UTSW	4	144,951,457 (GRCm39)	missense	probably damaging	1.00
R7891:Tnfrsf1b	UTSW	4	144,955,660 (GRCm39)	missense	probably damaging	1.00
R8796:Tnfrsf1b	UTSW	4	144,946,485 (GRCm39)	missense	possibly damaging	0.95
R8919:Tnfrsf1b	UTSW	4	144,950,150 (GRCm39)	missense	probably damaging	1.00
R9658:Tnfrsf1b	UTSW	4	144,942,424 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AACATAAGGCTGTCGGGAAC -3'
(R):5'- TCTGTGTAAAGAGGCGTGTC -3'

Sequencing Primer
(F):5'- AGGATCCCAACGGGCCAG -3'
(R):5'- AGGCGTGTCCTCAGGGC -3'

Posted On

2016-04-27