Incidental Mutation 'R4958:Or52n2b'
| ID |
381707 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Or52n2b
|
| Ensembl Gene |
ENSMUSG00000056782 |
| Gene Name |
olfactory receptor family 52 subfamily N member 2B |
| Synonyms |
MOR34-2, GA_x6K02T2PBJ9-7546146-7545166, Olfr667, MOR34-11 |
| MMRRC Submission |
042555-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly essential
(E-score: 0.574)
|
| Stock # |
R4958 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
7 |
| Chromosomal Location |
104565521-104566501 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 104565668 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Isoleucine to Methionine
at position 278
(I278M)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000150340
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000071362]
[ENSMUST00000217177]
|
| AlphaFold |
Q7TRP4 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000071362
AA Change: I278M
PolyPhen 2
Score 0.968 (Sensitivity: 0.77; Specificity: 0.95)
|
| SMART Domains |
Protein: ENSMUSP00000100470
Gene: ENSMUSG00000056782
AA Change: I278M
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:7tm_4
|
33 |
313 |
4.9e-102 |
PFAM |
|
Pfam:7TM_GPCR_Srsx
|
37 |
310 |
1.2e-8 |
PFAM |
|
Pfam:7tm_1
|
43 |
295 |
1.2e-19 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000209737
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000209875
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000211111
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000217177
AA Change: I278M
PolyPhen 2
Score 0.968 (Sensitivity: 0.77; Specificity: 0.95)
|
| Coding Region Coverage |
- 1x: 99.1%
- 3x: 98.4%
- 10x: 96.7%
- 20x: 93.8%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 37 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Ankrd7 |
A |
G |
6: 18,866,722 (GRCm39) |
S81G |
probably benign |
Het |
| Arel1 |
T |
C |
12: 84,973,078 (GRCm39) |
K573R |
possibly damaging |
Het |
| Atf7ip |
C |
T |
6: 136,583,808 (GRCm39) |
R1280C |
probably damaging |
Het |
| Atp1a4 |
T |
A |
1: 172,058,718 (GRCm39) |
D909V |
probably damaging |
Het |
| Cdh2 |
T |
G |
18: 16,760,622 (GRCm39) |
|
probably null |
Het |
| Col6a1 |
A |
T |
10: 76,559,339 (GRCm39) |
I99N |
probably damaging |
Het |
| Dennd4c |
A |
G |
4: 86,699,916 (GRCm39) |
T256A |
probably damaging |
Het |
| Dync1h1 |
C |
A |
12: 110,624,560 (GRCm39) |
T3700N |
probably damaging |
Het |
| Ereg |
T |
C |
5: 91,237,970 (GRCm39) |
V152A |
probably damaging |
Het |
| Gm4950 |
T |
C |
18: 51,998,641 (GRCm39) |
T105A |
probably benign |
Het |
| Hsf2 |
T |
C |
10: 57,377,467 (GRCm39) |
I121T |
probably damaging |
Het |
| Kmt2a |
A |
T |
9: 44,759,764 (GRCm39) |
L728Q |
probably damaging |
Het |
| Llgl1 |
G |
T |
11: 60,602,261 (GRCm39) |
R768L |
probably benign |
Het |
| Lyst |
A |
G |
13: 13,810,048 (GRCm39) |
I573V |
probably benign |
Het |
| Macf1 |
G |
T |
4: 123,369,157 (GRCm39) |
T303K |
probably damaging |
Het |
| Map3k5 |
A |
T |
10: 19,899,535 (GRCm39) |
Q264L |
possibly damaging |
Het |
| Mboat1 |
T |
C |
13: 30,408,376 (GRCm39) |
S180P |
probably damaging |
Het |
| Mfsd6 |
T |
C |
1: 52,700,183 (GRCm39) |
D655G |
probably damaging |
Het |
| Myh2 |
A |
G |
11: 67,083,785 (GRCm39) |
E1521G |
possibly damaging |
Het |
| Nsd2 |
T |
A |
5: 34,049,366 (GRCm39) |
S1200R |
probably damaging |
Het |
| Or51k2 |
T |
C |
7: 103,595,808 (GRCm39) |
F12L |
probably damaging |
Het |
| Or6z3 |
G |
A |
7: 6,464,057 (GRCm39) |
C183Y |
probably damaging |
Het |
| Or8h9 |
T |
C |
2: 86,789,449 (GRCm39) |
M118V |
possibly damaging |
Het |
| Pbrm1 |
T |
C |
14: 30,796,784 (GRCm39) |
I875T |
probably damaging |
Het |
| Pla2g1b |
T |
A |
5: 115,608,885 (GRCm39) |
F26I |
probably damaging |
Het |
| Plscr4 |
A |
G |
9: 92,366,814 (GRCm39) |
N143D |
possibly damaging |
Het |
| Rab11fip1 |
G |
T |
8: 27,644,841 (GRCm39) |
R315S |
probably damaging |
Het |
| Rptor |
G |
A |
11: 119,748,217 (GRCm39) |
R727Q |
probably benign |
Het |
| Serac1 |
A |
T |
17: 6,119,657 (GRCm39) |
V91D |
probably benign |
Het |
| Slco1a6 |
C |
A |
6: 142,091,431 (GRCm39) |
G90C |
probably damaging |
Het |
| Sulf1 |
A |
G |
1: 12,867,134 (GRCm39) |
Y106C |
probably benign |
Het |
| Syt13 |
G |
A |
2: 92,783,794 (GRCm39) |
V355M |
probably damaging |
Het |
| Tjp1 |
G |
A |
7: 64,985,850 (GRCm39) |
R314* |
probably null |
Het |
| Tshr |
A |
G |
12: 91,504,961 (GRCm39) |
D633G |
probably damaging |
Het |
| Usp5 |
C |
G |
6: 124,799,593 (GRCm39) |
K318N |
possibly damaging |
Het |
| Znrf4 |
A |
G |
17: 56,818,701 (GRCm39) |
F202S |
probably damaging |
Het |
| Zswim8 |
T |
A |
14: 20,763,533 (GRCm39) |
W427R |
probably damaging |
Het |
|
| Other mutations in Or52n2b |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02707:Or52n2b
|
APN |
7 |
104,565,859 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0457:Or52n2b
|
UTSW |
7 |
104,566,180 (GRCm39) |
missense |
probably benign |
0.19 |
|
R0684:Or52n2b
|
UTSW |
7 |
104,565,841 (GRCm39) |
missense |
probably benign |
0.21 |
|
R1343:Or52n2b
|
UTSW |
7 |
104,565,834 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1401:Or52n2b
|
UTSW |
7 |
104,565,963 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1415:Or52n2b
|
UTSW |
7 |
104,565,543 (GRCm39) |
missense |
probably benign |
0.03 |
|
R1644:Or52n2b
|
UTSW |
7 |
104,566,015 (GRCm39) |
missense |
probably benign |
0.02 |
|
R1907:Or52n2b
|
UTSW |
7 |
104,566,272 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2063:Or52n2b
|
UTSW |
7 |
104,565,982 (GRCm39) |
missense |
probably benign |
0.02 |
|
R3774:Or52n2b
|
UTSW |
7 |
104,566,113 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4751:Or52n2b
|
UTSW |
7 |
104,565,617 (GRCm39) |
nonsense |
probably null |
|
|
R4960:Or52n2b
|
UTSW |
7 |
104,565,915 (GRCm39) |
missense |
probably benign |
0.02 |
|
R5362:Or52n2b
|
UTSW |
7 |
104,565,834 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5988:Or52n2b
|
UTSW |
7 |
104,566,125 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7396:Or52n2b
|
UTSW |
7 |
104,565,558 (GRCm39) |
missense |
probably benign |
|
|
R8169:Or52n2b
|
UTSW |
7 |
104,565,619 (GRCm39) |
missense |
possibly damaging |
0.60 |
|
R8517:Or52n2b
|
UTSW |
7 |
104,565,681 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
R8722:Or52n2b
|
UTSW |
7 |
104,565,708 (GRCm39) |
missense |
probably benign |
0.03 |
|
R9461:Or52n2b
|
UTSW |
7 |
104,565,583 (GRCm39) |
missense |
probably benign |
0.06 |
|
Z1088:Or52n2b
|
UTSW |
7 |
104,565,873 (GRCm39) |
missense |
probably benign |
0.06 |
|
Z1177:Or52n2b
|
UTSW |
7 |
104,566,326 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
| Predicted Primers |
PCR Primer
(F):5'- ATGAGCTGACACCATTCACC -3'
(R):5'- TGTGGCCAAGATATCCTGTGG -3'
Sequencing Primer
(F):5'- CAACAATGTCACTCTTGTCT -3'
(R):5'- CCAAGATATCCTGTGGCAATGTG -3'
|
| Posted On |
2016-04-27 |
Incidental Mutation