Mutagenetix > Incidental Mutation

Incidental Mutation 'R4939:Orc3'

382892

Institutional Source

Beutler Lab

Gene Symbol

Orc3

Ensembl Gene

ENSMUSG00000040044

Gene Name

origin recognition complex, subunit 3

Synonyms

Orc3l

MMRRC Submission

042538-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4939 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

34570796-34614944 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to A at 34593126 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Stop codon at position 256 (Q256*)

Ref Sequence

ENSEMBL: ENSMUSP00000119335 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000048706] [ENSMUST00000108142] [ENSMUST00000140334]

AlphaFold

Q9JK30

Predicted Effect

probably null
Transcript: ENSMUST00000048706
AA Change: Q314*

SMART Domains

Protein: ENSMUSP00000048319
Gene: ENSMUSG00000040044
AA Change: Q314*

Domain	Start	End	E-Value	Type
Pfam:ORC3_N	25	350	3e-130	PFAM
low complexity region	653	664	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000108142
AA Change: Q314*

SMART Domains

Protein: ENSMUSP00000103777
Gene: ENSMUSG00000040044
AA Change: Q314*

Domain	Start	End	E-Value	Type
Pfam:ORC3_N	24	350	7.7e-136	PFAM
low complexity region	652	663	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132918

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133107

Predicted Effect

probably null
Transcript: ENSMUST00000140334
AA Change: Q256*

SMART Domains

Protein: ENSMUSP00000119335
Gene: ENSMUSG00000040044
AA Change: Q256*

Domain	Start	End	E-Value	Type
Pfam:ORC3_N	2	278	1.4e-117	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141529

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156987

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.6%
20x: 93.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The origin recognition complex (ORC) is a highly conserved six subunits protein complex essential for the initiation of the DNA replication in eukaryotic cells. Studies in yeast demonstrated that ORC binds specifically to origins of replication and serves as a platform for the assembly of additional initiation factors such as Cdc6 and Mcm proteins. The protein encoded by this gene is a subunit of the ORC complex. Studies of a similar gene in Drosophila suggested a possible role of this protein in neuronal proliferation and olfactory memory. Alternatively spliced transcript variants encoding distinct isoforms have been reported for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a conditional allele activated in the neural cells exhibit reduced neuronal precursor proliferation and reduced radial glial cell. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamtsl1	A	T	4: 86,161,962 (GRCm39)	Y365F	possibly damaging	Het
Atp2a1	T	C	7: 126,049,288 (GRCm39)	M585V	probably benign	Het
Brca1	A	G	11: 101,398,876 (GRCm39)	V1572A	probably benign	Het
C1ql4	A	T	15: 98,985,521 (GRCm39)	M30K	probably damaging	Het
Ccdc73	A	G	2: 104,822,502 (GRCm39)		probably null	Het
Cdk6	A	T	5: 3,394,377 (GRCm39)	D4V	probably null	Het
Celf3	ACAGCAGCAGCAGCAGCAGCAGCA	ACAGCAGCAGCAGCAGCAGCA	3: 94,395,537 (GRCm39)		probably benign	Het
Clic4	T	C	4: 134,950,852 (GRCm39)	E113G	probably benign	Het
Creld1	C	A	6: 113,465,140 (GRCm39)	H122Q	probably benign	Het
Cyp4a29	G	A	4: 115,104,873 (GRCm39)		probably null	Het
Dnaaf3	A	T	7: 4,530,144 (GRCm39)	S246R	probably damaging	Het
Dnah12	A	T	14: 26,613,481 (GRCm39)	T3925S	probably damaging	Het
Dnajc21	T	A	15: 10,449,683 (GRCm39)	D446V	probably damaging	Het
Dock8	A	T	19: 25,099,764 (GRCm39)	Y629F	probably damaging	Het
Duxf4	T	C	10: 58,071,425 (GRCm39)	N263S	probably benign	Het
E2f8	A	T	7: 48,521,886 (GRCm39)	N405K	probably benign	Het
Flg	A	G	3: 93,187,154 (GRCm39)	N202S	probably benign	Het
Glyatl3	A	G	17: 41,220,914 (GRCm39)		probably null	Het
Gm38999	A	G	7: 43,077,885 (GRCm39)	T63A	possibly damaging	Het
Grap	A	G	11: 61,551,124 (GRCm39)	Y52C	probably damaging	Het
Haus2	T	A	2: 120,449,517 (GRCm39)	I187K	probably damaging	Het
Heatr5b	T	C	17: 79,069,689 (GRCm39)	E1686G	probably benign	Het
Herc2	A	G	7: 55,856,484 (GRCm39)	D3944G	probably damaging	Het
Hexd	A	T	11: 121,098,542 (GRCm39)	M9L	probably benign	Het
Hoxa3	T	C	6: 52,147,656 (GRCm39)		probably benign	Het
Hspg2	A	T	4: 137,235,342 (GRCm39)	I126F	probably damaging	Het
Itpr1	T	A	6: 108,417,519 (GRCm39)	C123*	probably null	Het
Jmjd1c	T	A	10: 67,081,916 (GRCm39)	N2346K	possibly damaging	Het
Kctd9	A	G	14: 67,967,135 (GRCm39)	Y37C	probably damaging	Het
Kmt5b	A	C	19: 3,865,245 (GRCm39)	S747R	possibly damaging	Het
Krt26	T	C	11: 99,225,522 (GRCm39)	M320V	probably benign	Het
Lama1	T	G	17: 68,044,470 (GRCm39)	V123G	possibly damaging	Het
Lamc2	T	C	1: 153,002,582 (GRCm39)	D1103G	probably damaging	Het
Lepr	A	T	4: 101,590,635 (GRCm39)	K71I	possibly damaging	Het
Llgl1	A	T	11: 60,600,805 (GRCm39)		probably null	Het
Mcoln2	A	T	3: 145,897,996 (GRCm39)	H39L	probably benign	Het
Mtrex	T	C	13: 113,046,426 (GRCm39)	D308G	possibly damaging	Het
Myh11	T	A	16: 14,057,371 (GRCm39)	T315S	probably benign	Het
Ncapd3	T	C	9: 26,975,165 (GRCm39)		probably null	Het
Nlrp9b	G	T	7: 19,758,421 (GRCm39)	V553F	probably damaging	Het
Nubpl	A	G	12: 52,227,878 (GRCm39)	N129S	probably damaging	Het
Nup214	C	A	2: 31,873,171 (GRCm39)	T255K	probably benign	Het
Or10j3	T	C	1: 173,031,030 (GRCm39)	Y36H	possibly damaging	Het
Or2t46	G	T	11: 58,472,037 (GRCm39)	M122I	probably damaging	Het
Or2y17	A	G	11: 49,231,376 (GRCm39)	T6A	probably benign	Het
Or4d1	G	T	11: 87,804,950 (GRCm39)	P261T	probably damaging	Het
Or52z14	T	C	7: 103,253,458 (GRCm39)	V199A	probably benign	Het
Or5b3	T	A	19: 13,388,219 (GRCm39)	N95K	probably benign	Het
Pbrm1	A	G	14: 30,783,580 (GRCm39)	M566V	probably damaging	Het
Pde6b	A	G	5: 108,569,363 (GRCm39)	I357V	probably benign	Het
Pkdrej	A	G	15: 85,704,484 (GRCm39)	I484T	possibly damaging	Het
Plvap	A	G	8: 71,964,083 (GRCm39)	V93A	probably benign	Het
Plxna4	T	C	6: 32,142,697 (GRCm39)	Y1586C	probably damaging	Het
Ppfia4	A	T	1: 134,255,817 (GRCm39)	L196Q	possibly damaging	Het
Ptpn13	T	G	5: 103,665,335 (GRCm39)		probably null	Het
Ranbp17	T	C	11: 33,169,223 (GRCm39)	N997S	probably benign	Het
Rpap2	G	T	5: 107,751,491 (GRCm39)		probably null	Het
Rrm1	T	C	7: 102,116,131 (GRCm39)	V683A	probably benign	Het
Ruvbl1	A	G	6: 88,460,021 (GRCm39)		probably null	Het
Sh3pxd2a	A	G	19: 47,266,843 (GRCm39)	Y277H	probably damaging	Het
Shank1	C	T	7: 43,975,586 (GRCm39)	P477S	unknown	Het
Shtn1	T	C	19: 59,010,633 (GRCm39)	E278G	probably benign	Het
Skap2	T	A	6: 51,899,303 (GRCm39)	I109F	possibly damaging	Het
Slc28a3	A	C	13: 58,706,395 (GRCm39)	I615M	probably benign	Het
Slc4a11	A	G	2: 130,526,788 (GRCm39)	L780P	probably damaging	Het
Slc5a4b	T	C	10: 75,917,301 (GRCm39)	E245G	probably benign	Het
Slfn8	C	T	11: 82,894,111 (GRCm39)	A843T	probably benign	Het
Sncaip	A	T	18: 53,040,335 (GRCm39)	Q843L	possibly damaging	Het
Spidr	T	A	16: 15,958,610 (GRCm39)	K51*	probably null	Het
Spopfm2	A	T	3: 94,083,540 (GRCm39)	Y90*	probably null	Het
Tas2r123	T	C	6: 132,824,808 (GRCm39)	V235A	probably benign	Het
Tgfbr3	T	C	5: 107,278,335 (GRCm39)	D757G	probably benign	Het
Tmem132d	A	T	5: 127,873,139 (GRCm39)	V490D	probably damaging	Het
Top2a	T	A	11: 98,900,918 (GRCm39)	H557L	probably damaging	Het
Trafd1	A	G	5: 121,513,254 (GRCm39)	I328T	probably benign	Het
Trappc11	G	A	8: 47,972,700 (GRCm39)	A291V	probably damaging	Het
Tuba1c	A	G	15: 98,935,835 (GRCm39)	Y432C	probably damaging	Het
Utp11	T	G	4: 124,577,043 (GRCm39)	R109S	possibly damaging	Het
Vmn1r159	T	G	7: 22,542,316 (GRCm39)	T239P	probably damaging	Het
Vwce	A	T	19: 10,622,414 (GRCm39)	N239Y	probably damaging	Het
Yes1	T	C	5: 32,802,457 (GRCm39)		probably null	Het
Zfand6	A	C	7: 84,265,030 (GRCm39)	*224G	probably null	Het
Zfp408	A	T	2: 91,475,450 (GRCm39)	I668N	probably damaging	Het
Zfp647	TGCACG	TGCACGCACG	15: 76,795,244 (GRCm39)		probably null	Het
Zfp946	T	C	17: 22,674,418 (GRCm39)	F391L	probably damaging	Het

Other mutations in Orc3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01636:Orc3	APN	4	34,595,096 (GRCm39)	missense	probably damaging	1.00
IGL03293:Orc3	APN	4	34,595,210 (GRCm39)	missense	probably damaging	0.96
IGL02991:Orc3	UTSW	4	34,593,083 (GRCm39)	missense	probably damaging	1.00
R0157:Orc3	UTSW	4	34,607,130 (GRCm39)	critical splice donor site	probably null
R0708:Orc3	UTSW	4	34,597,368 (GRCm39)	missense	probably damaging	1.00
R1331:Orc3	UTSW	4	34,599,748 (GRCm39)	missense	probably benign	0.01
R1481:Orc3	UTSW	4	34,607,228 (GRCm39)	missense	possibly damaging	0.50
R1755:Orc3	UTSW	4	34,575,114 (GRCm39)	missense	possibly damaging	0.67
R1886:Orc3	UTSW	4	34,584,829 (GRCm39)	missense	probably damaging	1.00
R2008:Orc3	UTSW	4	34,611,049 (GRCm39)	splice site	probably null
R2054:Orc3	UTSW	4	34,584,846 (GRCm39)	missense	probably damaging	0.97
R2307:Orc3	UTSW	4	34,586,503 (GRCm39)	missense	probably damaging	1.00
R3001:Orc3	UTSW	4	34,571,790 (GRCm39)	missense	probably benign	0.10
R3002:Orc3	UTSW	4	34,571,790 (GRCm39)	missense	probably benign	0.10
R3153:Orc3	UTSW	4	34,575,124 (GRCm39)	missense	probably damaging	0.99
R4044:Orc3	UTSW	4	34,587,055 (GRCm39)	nonsense	probably null
R4814:Orc3	UTSW	4	34,572,450 (GRCm39)	splice site	probably benign
R4825:Orc3	UTSW	4	34,571,774 (GRCm39)	missense	possibly damaging	0.95
R6314:Orc3	UTSW	4	34,579,797 (GRCm39)	missense	possibly damaging	0.85
R6867:Orc3	UTSW	4	34,605,539 (GRCm39)	missense	probably damaging	1.00
R7227:Orc3	UTSW	4	34,572,542 (GRCm39)	missense	probably benign	0.00
R7417:Orc3	UTSW	4	34,595,136 (GRCm39)	missense	probably damaging	1.00
R7655:Orc3	UTSW	4	34,587,032 (GRCm39)	nonsense	probably null
R7656:Orc3	UTSW	4	34,587,032 (GRCm39)	nonsense	probably null
R7707:Orc3	UTSW	4	34,598,691 (GRCm39)	nonsense	probably null
R7856:Orc3	UTSW	4	34,585,647 (GRCm39)	missense	probably benign
R7967:Orc3	UTSW	4	34,598,645 (GRCm39)	missense	probably damaging	0.98
R8058:Orc3	UTSW	4	34,595,223 (GRCm39)	nonsense	probably null
R8443:Orc3	UTSW	4	34,593,173 (GRCm39)	missense	probably damaging	1.00
R8670:Orc3	UTSW	4	34,572,529 (GRCm39)	missense	probably damaging	1.00
R8738:Orc3	UTSW	4	34,599,778 (GRCm39)	missense	possibly damaging	0.91
R8827:Orc3	UTSW	4	34,605,569 (GRCm39)	missense	probably benign	0.01
R9303:Orc3	UTSW	4	34,607,181 (GRCm39)	nonsense	probably null
R9305:Orc3	UTSW	4	34,607,181 (GRCm39)	nonsense	probably null
R9684:Orc3	UTSW	4	34,607,135 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- CTGTCTTCTATAGGTGACTTCAGC -3'
(R):5'- GTTTAGCGGATGAGACCCTC -3'

Sequencing Primer
(F):5'- TGACTTCAGCATAATAAAGGAAAGG -3'
(R):5'- TCTCTCAAACAAACAGGCATTG -3'

Posted On

2016-04-27