Mutagenetix > Incidental Mutation

Incidental Mutation 'R4969:Or52u1'

384271

Institutional Source

Beutler Lab

Gene Symbol

Or52u1

Ensembl Gene

ENSMUSG00000073925

Gene Name

olfactory receptor family 52 subfamily U member 1

Synonyms

MOR38-2, Olfr654, GA_x6K02T2PBJ9-7215221-7216195

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.066) question?

Stock #

R4969 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

104236926-104238081 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 104237730 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Tyrosine at position 240 (N240Y)

Ref Sequence

ENSEMBL: ENSMUSP00000149640 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000098173] [ENSMUST00000210457] [ENSMUST00000213984] [ENSMUST00000215585] [ENSMUST00000217466]

AlphaFold

Q8VF27

Predicted Effect

probably damaging
Transcript: ENSMUST00000098173
AA Change: N257Y

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000095775
Gene: ENSMUSG00000073925
AA Change: N257Y

Domain	Start	End	E-Value	Type
low complexity region	3	17	N/A	INTRINSIC
Pfam:7TM_GPCR_Srbc	43	176	2.5e-8	PFAM
Pfam:7tm_4	49	328	1.7e-103	PFAM
Pfam:7TM_GPCR_Srsx	53	325	1.6e-7	PFAM
Pfam:7tm_1	59	310	9.2e-22	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000210457
AA Change: N240Y

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

Predicted Effect

probably damaging
Transcript: ENSMUST00000213984
AA Change: N240Y

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

Predicted Effect

probably benign
Transcript: ENSMUST00000215585

Predicted Effect

probably benign
Transcript: ENSMUST00000217466

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.6%
20x: 93.2%

Validation Efficiency

MGI Phenotype

FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc8	A	G	7: 45,754,943 (GRCm39)	I1525T	probably benign	Het
Agtpbp1	A	G	13: 59,648,392 (GRCm39)	V476A	probably benign	Het
Aipl1	A	G	11: 71,922,256 (GRCm39)	I151T	probably benign	Het
Apc	C	T	18: 34,445,971 (GRCm39)	R938*	probably null	Het
Atp2a2	A	G	5: 122,596,554 (GRCm39)	F855S	possibly damaging	Het
Axdnd1	T	C	1: 156,223,075 (GRCm39)	T261A	possibly damaging	Het
Cbfa2t2	A	G	2: 154,365,900 (GRCm39)	D370G	probably damaging	Het
Cep350	T	C	1: 155,736,025 (GRCm39)	I2964V	probably damaging	Het
Clec16a	T	C	16: 10,386,375 (GRCm39)	V158A	probably damaging	Het
Col6a5	G	A	9: 105,741,806 (GRCm39)	T2371I	probably damaging	Het
Cpne8	T	C	15: 90,503,929 (GRCm39)	T79A	probably damaging	Het
Cyp2b13	A	G	7: 25,780,413 (GRCm39)	R145G	probably damaging	Het
Disc1	G	A	8: 125,851,289 (GRCm39)	W391*	probably null	Het
Dnah8	G	A	17: 30,941,988 (GRCm39)	V1745I	probably damaging	Het
Dsp	T	C	13: 38,376,886 (GRCm39)	V1557A	probably benign	Het
Egfem1	T	A	3: 29,637,145 (GRCm39)	Y194N	probably damaging	Het
Eif4a3	A	G	11: 119,179,705 (GRCm39)	Y361H	probably damaging	Het
Esd	T	A	14: 74,982,153 (GRCm39)	S189R	possibly damaging	Het
Fancf	A	T	7: 51,511,196 (GRCm39)	Y269*	probably null	Het
Fbln2	A	T	6: 91,248,569 (GRCm39)	H1078L	possibly damaging	Het
Fbxw13	A	G	9: 109,010,592 (GRCm39)		probably null	Het
Fcgr2b	A	T	1: 170,790,941 (GRCm39)	V284D	probably benign	Het
Fuz	G	A	7: 44,549,718 (GRCm39)	G363R	probably damaging	Het
Gas7	A	G	11: 67,574,234 (GRCm39)	E403G	probably damaging	Het
Gnl1	A	G	17: 36,291,581 (GRCm39)	D49G	possibly damaging	Het
Gucy2g	A	G	19: 55,214,445 (GRCm39)	V561A	probably benign	Het
H1f7	A	T	15: 98,154,216 (GRCm39)	V311E	unknown	Het
Hebp2	T	C	10: 18,420,122 (GRCm39)	T104A	probably benign	Het
Ighv1-19	T	A	12: 114,672,377 (GRCm39)	Q80L	probably benign	Het
Kctd19	T	A	8: 106,122,959 (GRCm39)		probably null	Het
Kdm3b	T	C	18: 34,955,428 (GRCm39)	L905P	probably damaging	Het
Klkb1	T	C	8: 45,735,814 (GRCm39)	D183G	probably benign	Het
Krt6b	T	C	15: 101,588,460 (GRCm39)	R67G	possibly damaging	Het
Krt75	T	C	15: 101,482,248 (GRCm39)	I7V	probably benign	Het
Lpo	A	T	11: 87,697,751 (GRCm39)	N685K	probably benign	Het
Mroh7	A	T	4: 106,538,070 (GRCm39)	I1202N	probably benign	Het
Muc4	T	A	16: 32,754,572 (GRCm38)	M1482K	probably benign	Het
Mylk	T	A	16: 34,791,810 (GRCm39)	V1494E	probably damaging	Het
Neurl4	A	G	11: 69,801,913 (GRCm39)	D17G	probably damaging	Het
Nkx6-3	A	G	8: 23,647,725 (GRCm39)	Y228C	probably damaging	Het
Nprl2	G	A	9: 107,420,273 (GRCm39)		probably null	Het
Nxf1	A	G	19: 8,739,669 (GRCm39)		probably null	Het
Or4a39	A	G	2: 89,236,770 (GRCm39)	F218L	probably benign	Het
Pde3b	A	G	7: 114,118,847 (GRCm39)	E662G	possibly damaging	Het
Plekhm3	G	A	1: 64,977,078 (GRCm39)	R131C	probably damaging	Het
Plpp7	T	C	2: 31,985,950 (GRCm39)	S43P	probably benign	Het
Pramel5	A	G	4: 143,998,187 (GRCm39)	L352P	probably damaging	Het
Prepl	T	C	17: 85,395,902 (GRCm39)	S27G	probably benign	Het
Ptprd	A	G	4: 76,051,542 (GRCm39)	I227T	probably damaging	Het
Pttg1ip	C	T	10: 77,419,854 (GRCm39)	Q6*	probably null	Het
Rgl1	C	T	1: 152,424,813 (GRCm39)		probably null	Het
Riiad1	C	A	3: 94,380,173 (GRCm39)	G41*	probably null	Het
Rnf214	C	T	9: 45,807,486 (GRCm39)	R239H	probably damaging	Het
Rpap3	C	T	15: 97,584,407 (GRCm39)	V346I	probably benign	Het
Scaf4	G	A	16: 90,048,831 (GRCm39)	Q328*	probably null	Het
Sec23a	A	G	12: 59,051,274 (GRCm39)		probably null	Het
Slc5a8	T	A	10: 88,740,774 (GRCm39)		probably null	Het
Slc9a8	A	G	2: 167,288,449 (GRCm39)	T183A	probably benign	Het
Sod3	A	T	5: 52,525,736 (GRCm39)	H145L	probably damaging	Het
Sp4	A	G	12: 118,263,341 (GRCm39)	V235A	probably damaging	Het
Spp1	A	C	5: 104,588,153 (GRCm39)	E185A	possibly damaging	Het
Susd1	A	T	4: 59,351,679 (GRCm39)	W461R	probably benign	Het
Svil	A	C	18: 5,095,516 (GRCm39)	K1124Q	probably damaging	Het
Tdrd12	A	T	7: 35,186,720 (GRCm39)		probably null	Het
Terb1	A	T	8: 105,221,795 (GRCm39)	N168K	probably benign	Het
Tnnt1	A	G	7: 4,510,573 (GRCm39)	L216P	probably damaging	Het
Ttc28	A	G	5: 111,424,121 (GRCm39)	K1463E	probably damaging	Het
Twf2	T	G	9: 106,089,098 (GRCm39)		probably null	Het
Urb1	C	T	16: 90,602,299 (GRCm39)	R90Q	probably damaging	Het
Wdr45b	A	T	11: 121,219,650 (GRCm39)	C299*	probably null	Het
Wrap73	A	G	4: 154,237,138 (GRCm39)	S54G	probably damaging	Het
Zeb2	T	C	2: 44,888,931 (GRCm39)	K323R	probably damaging	Het
Zfp410	T	C	12: 84,378,582 (GRCm39)	I302T	possibly damaging	Het

Other mutations in Or52u1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01481:Or52u1	APN	7	104,237,067 (GRCm39)	missense	probably damaging	1.00
IGL01677:Or52u1	APN	7	104,237,352 (GRCm39)	missense	probably damaging	0.97
IGL01807:Or52u1	APN	7	104,237,091 (GRCm39)	missense	probably damaging	1.00
IGL03113:Or52u1	APN	7	104,237,940 (GRCm39)	missense	probably benign	0.01
R0504:Or52u1	UTSW	7	104,237,682 (GRCm39)	nonsense	probably null
R0647:Or52u1	UTSW	7	104,237,322 (GRCm39)	missense	probably damaging	1.00
R0941:Or52u1	UTSW	7	104,237,545 (GRCm39)	missense	probably damaging	1.00
R0945:Or52u1	UTSW	7	104,237,879 (GRCm39)	missense	probably damaging	1.00
R1423:Or52u1	UTSW	7	104,237,682 (GRCm39)	nonsense	probably null
R1860:Or52u1	UTSW	7	104,237,112 (GRCm39)	missense	probably damaging	0.98
R2872:Or52u1	UTSW	7	104,237,700 (GRCm39)	missense	possibly damaging	0.87
R2872:Or52u1	UTSW	7	104,237,700 (GRCm39)	missense	possibly damaging	0.87
R4082:Or52u1	UTSW	7	104,237,830 (GRCm39)	missense	probably damaging	1.00
R4760:Or52u1	UTSW	7	104,237,696 (GRCm39)	missense	probably benign	0.32
R4787:Or52u1	UTSW	7	104,237,167 (GRCm39)	missense	probably benign
R5186:Or52u1	UTSW	7	104,237,418 (GRCm39)	missense	probably damaging	1.00
R5706:Or52u1	UTSW	7	104,237,097 (GRCm39)	missense	probably benign	0.02
R6582:Or52u1	UTSW	7	104,237,218 (GRCm39)	missense	probably damaging	1.00
R7076:Or52u1	UTSW	7	104,237,430 (GRCm39)	missense	probably damaging	1.00
R7155:Or52u1	UTSW	7	104,237,764 (GRCm39)	missense	possibly damaging	0.88
R7424:Or52u1	UTSW	7	104,237,907 (GRCm39)	missense	probably damaging	1.00
R7559:Or52u1	UTSW	7	104,237,087 (GRCm39)	missense	probably damaging	1.00
R7722:Or52u1	UTSW	7	104,237,505 (GRCm39)	missense	possibly damaging	0.77
Z1177:Or52u1	UTSW	7	104,237,211 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCATGCCAATCGAGTCATCCC -3'
(R):5'- ATTTTGTCCCGAAATTCCTTGG -3'

Sequencing Primer
(F):5'- CCTACTGTGAACACATGGCTG -3'
(R):5'- GTCCCGAAATTCCTTGGTTTTTAC -3'

Posted On

2016-04-27