Mutagenetix > Incidental Mutation

Incidental Mutation 'R4970:Lrfn5'

384406

Institutional Source

Beutler Lab

Gene Symbol

Lrfn5

Ensembl Gene

ENSMUSG00000035653

Gene Name

leucine rich repeat and fibronectin type III domain containing 5

Synonyms

MMRRC Submission

042565-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.084) question?

Stock #

R4970 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

61569936-61905128 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 61886461 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Tyrosine at position 83 (S83Y)

Ref Sequence

ENSEMBL: ENSMUSP00000113123 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000055815] [ENSMUST00000119481]

AlphaFold

Q8BXA0

Predicted Effect

probably damaging
Transcript: ENSMUST00000055815
AA Change: S83Y

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000051546
Gene: ENSMUSG00000035653
AA Change: S83Y

Domain	Start	End	E-Value	Type
signal peptide	1	17	N/A	INTRINSIC
LRRNT	19	55	1.11e1	SMART
LRR	74	97	3.07e-1	SMART
LRR_TYP	98	121	1.2e-3	SMART
LRR_TYP	122	145	8.94e-3	SMART
LRR	146	169	6.58e0	SMART
LRR_TYP	170	193	8.34e-3	SMART
LRR	194	218	2.47e1	SMART
LRRCT	240	285	1.65e-2	SMART
IGc2	299	364	3.53e-13	SMART
low complexity region	393	412	N/A	INTRINSIC
Blast:FN3	414	495	2e-48	BLAST
transmembrane domain	528	550	N/A	INTRINSIC
low complexity region	613	627	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000119481
AA Change: S83Y

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000113123
Gene: ENSMUSG00000035653
AA Change: S83Y

Domain	Start	End	E-Value	Type
signal peptide	1	17	N/A	INTRINSIC
LRRNT	19	55	1.11e1	SMART
LRR	74	97	3.07e-1	SMART
LRR_TYP	98	121	1.2e-3	SMART
LRR_TYP	122	145	8.94e-3	SMART
LRR	146	169	6.58e0	SMART
LRR_TYP	170	193	8.34e-3	SMART
LRR	194	218	2.47e1	SMART
LRRCT	240	285	1.65e-2	SMART
IGc2	299	364	3.53e-13	SMART
low complexity region	393	412	N/A	INTRINSIC
Blast:FN3	414	495	2e-48	BLAST
transmembrane domain	528	550	N/A	INTRINSIC
low complexity region	613	627	N/A	INTRINSIC

Meta Mutation Damage Score

0.8411

Coding Region Coverage

1x: 99.2%
3x: 98.4%
10x: 96.7%
20x: 93.6%

Validation Efficiency

99% (114/115)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that belongs to the leucine-rich repeat and fibronectin type III domain-containing family of proteins. A similar protein in mouse, a glycosylated transmembrane protein, is thought to function in presynaptic differentiation. [provided by RefSeq, Sep 2016]

Allele List at MGI

Other mutations in this stock

Total: 101 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700128F08Rik	A	G	9: 8,222,066 (GRCm39)		noncoding transcript	Het
Aars1	A	G	8: 111,770,311 (GRCm39)	M370V	probably benign	Het
Abca2	A	G	2: 25,328,383 (GRCm39)	K846R	probably damaging	Het
Acad9	A	T	3: 36,139,674 (GRCm39)	I425F	probably damaging	Het
Adhfe1	C	A	1: 9,628,463 (GRCm39)	D278E	possibly damaging	Het
Afg3l1	G	A	8: 124,225,392 (GRCm39)	V532I	probably benign	Het
Anks6	C	T	4: 47,030,795 (GRCm39)	G601S	probably damaging	Het
Ano7	G	A	1: 93,325,085 (GRCm39)	V546M	possibly damaging	Het
Aox1	G	A	1: 58,349,254 (GRCm39)		probably null	Het
Asah1	G	T	8: 41,813,314 (GRCm39)	S33*	probably null	Het
Astn1	C	T	1: 158,484,763 (GRCm39)	S15F	possibly damaging	Het
Bag4	A	T	8: 26,261,272 (GRCm39)	Y156*	probably null	Het
Bmpr1b	T	C	3: 141,550,948 (GRCm39)	E381G	probably damaging	Het
Btnl7-ps	A	G	17: 34,756,092 (GRCm39)		noncoding transcript	Het
Caap1	A	T	4: 94,409,297 (GRCm39)		probably null	Het
Card10	C	T	15: 78,686,580 (GRCm39)		probably null	Het
Ccp110	T	C	7: 118,321,614 (GRCm39)	V423A	possibly damaging	Het
Cdc123	A	G	2: 5,809,748 (GRCm39)	L221P	possibly damaging	Het
Cdh19	A	G	1: 110,882,354 (GRCm39)	V46A	possibly damaging	Het
Cfap57	A	G	4: 118,477,568 (GRCm39)	F12S	probably damaging	Het
Clvs1	A	G	4: 9,350,857 (GRCm39)		probably benign	Het
Dgkh	A	T	14: 78,856,077 (GRCm39)	V199E	probably damaging	Het
Dhx32	T	A	7: 133,340,384 (GRCm39)		probably benign	Het
Dpf3	G	T	12: 83,417,385 (GRCm39)	S29*	probably null	Het
Efcab7	C	A	4: 99,719,780 (GRCm39)	S87R	probably damaging	Het
Fam81a	G	A	9: 70,000,872 (GRCm39)	Q291*	probably null	Het
Fbxo41	G	T	6: 85,454,906 (GRCm39)	N667K	probably damaging	Het
Flacc1	T	C	1: 58,698,441 (GRCm39)	T326A	probably benign	Het
Gm10313	A	T	8: 46,708,462 (GRCm39)		noncoding transcript	Het
Gm28051	G	A	12: 102,686,430 (GRCm39)	Q77*	probably null	Het
Gm5535	T	A	2: 144,016,569 (GRCm39)		noncoding transcript	Het
Gtf2ird1	A	T	5: 134,431,038 (GRCm39)	D339E	probably damaging	Het
Gvin3	A	T	7: 106,199,864 (GRCm39)		noncoding transcript	Het
Igfbp7	A	G	5: 77,555,608 (GRCm39)	M85T	possibly damaging	Het
Il20ra	A	G	10: 19,634,691 (GRCm39)	T311A	possibly damaging	Het
Il24	T	C	1: 130,811,179 (GRCm39)		probably null	Het
Itch	T	C	2: 155,027,513 (GRCm39)	F379L	possibly damaging	Het
Itgad	T	A	7: 127,789,015 (GRCm39)	V488D	possibly damaging	Het
Itpr2	A	T	6: 146,135,489 (GRCm39)	M1814K	possibly damaging	Het
Kirrel3	A	G	9: 34,855,735 (GRCm39)	E92G	possibly damaging	Het
Lpin2	T	C	17: 71,538,329 (GRCm39)	V325A	probably damaging	Het
Lrba	C	T	3: 86,132,678 (GRCm39)	T28M	probably benign	Het
Lrch3	T	C	16: 32,818,883 (GRCm39)	Y661H	probably damaging	Het
Lrp1	A	C	10: 127,375,389 (GRCm39)	L4435R	probably benign	Het
Lrrn1	A	G	6: 107,546,305 (GRCm39)	D701G	probably benign	Het
Map4k3	A	T	17: 80,961,332 (GRCm39)	Y125N	probably benign	Het
Mau2	A	T	8: 70,480,353 (GRCm39)	H273Q	possibly damaging	Het
Med16	A	C	10: 79,742,871 (GRCm39)		probably null	Het
Mmp17	A	G	5: 129,679,229 (GRCm39)	H376R	possibly damaging	Het
Nlrp12	G	A	7: 3,289,613 (GRCm39)	H300Y	possibly damaging	Het
Nlrp3	A	T	11: 59,439,554 (GRCm39)	Y377F	probably damaging	Het
Notch2	T	C	3: 98,008,952 (GRCm39)		probably null	Het
Nudcd1	A	T	15: 44,240,039 (GRCm39)	C500*	probably null	Het
Or52z14	T	C	7: 103,253,197 (GRCm39)	I112T	probably damaging	Het
Or5d37	A	G	2: 87,923,353 (GRCm39)	V309A	probably damaging	Het
Or6b6	T	A	7: 106,570,778 (GRCm39)	M258L	probably benign	Het
Or8g23	A	T	9: 38,971,827 (GRCm39)	M45K	probably benign	Het
Or8h9	A	T	2: 86,789,698 (GRCm39)	Y35N	probably damaging	Het
Pcdhb20	T	A	18: 37,639,824 (GRCm39)	N783K	probably benign	Het
Pclo	T	A	5: 14,727,896 (GRCm39)		probably benign	Het
Pdyn	T	A	2: 129,530,021 (GRCm39)	D216V	probably damaging	Het
Phldb3	A	T	7: 24,324,110 (GRCm39)	I495F	possibly damaging	Het
Pmpca	A	T	2: 26,285,178 (GRCm39)	I468F	probably damaging	Het
Pmpcb	G	A	5: 21,961,441 (GRCm39)	R399H	probably damaging	Het
Polrmt	G	T	10: 79,572,421 (GRCm39)	H1145N	probably damaging	Het
Proser1	A	G	3: 53,371,727 (GRCm39)	D11G	probably damaging	Het
Ptprc	A	G	1: 138,022,037 (GRCm39)	S544P	probably damaging	Het
Ptprn2	G	A	12: 117,240,215 (GRCm39)	E991K	probably damaging	Het
Pwp2	A	C	10: 78,009,527 (GRCm39)	L797R	possibly damaging	Het
Rbm20	G	A	19: 53,840,100 (GRCm39)	A1030T	probably damaging	Het
Rdh7	T	C	10: 127,721,691 (GRCm39)	Y195C	probably benign	Het
Rev3l	T	A	10: 39,699,326 (GRCm39)	D1274E	probably benign	Het
Scfd2	G	T	5: 74,366,982 (GRCm39)	H639Q	probably benign	Het
Sell	T	A	1: 163,892,887 (GRCm39)	H34Q	possibly damaging	Het
Senp8	A	C	9: 59,644,504 (GRCm39)	D204E	probably benign	Het
Setd2	A	G	9: 110,377,226 (GRCm39)	D347G	probably benign	Het
Sh2b1	T	A	7: 126,067,975 (GRCm39)	R560W	probably damaging	Het
Slc36a3	T	A	11: 55,039,399 (GRCm39)	K76N	probably damaging	Het
Slc6a9	A	T	4: 117,713,205 (GRCm39)	Y60F	probably damaging	Het
Slfn10-ps	C	T	11: 82,921,207 (GRCm39)		noncoding transcript	Het
Spata31d1d	G	A	13: 59,875,334 (GRCm39)	H734Y	probably benign	Het
Spmip10	G	T	18: 56,725,494 (GRCm39)	M46I	possibly damaging	Het
Spsb1	T	A	4: 149,991,612 (GRCm39)		probably benign	Het
Sptbn5	T	A	2: 119,882,258 (GRCm39)		noncoding transcript	Het
Sugp2	G	A	8: 70,712,462 (GRCm39)	V1026I	possibly damaging	Het
Syt14	T	A	1: 192,613,285 (GRCm39)		probably benign	Het
Sytl1	G	A	4: 132,982,893 (GRCm39)	Q373*	probably null	Het
Trim38	T	A	13: 23,975,312 (GRCm39)	L417Q	probably damaging	Het
Ttll1	T	C	15: 83,380,597 (GRCm39)	H256R	probably damaging	Het
Ttyh2	A	T	11: 114,587,583 (GRCm39)	T195S	probably benign	Het
Unc119b	A	G	5: 115,263,553 (GRCm39)	L217P	probably damaging	Het
Usp6nl	A	G	2: 6,425,714 (GRCm39)	K152E	probably benign	Het
Vcam1	T	C	3: 115,910,941 (GRCm39)	R486G	probably benign	Het
Vmn1r225	G	A	17: 20,722,831 (GRCm39)	G91S	possibly damaging	Het
Vmn2r1	A	C	3: 63,997,544 (GRCm39)	Q400P	possibly damaging	Het
Vmn2r87	A	T	10: 130,314,422 (GRCm39)	L388Q	probably damaging	Het
Wnk1	A	T	6: 119,942,696 (GRCm39)		probably benign	Het
Zfp239	A	G	6: 117,847,478 (GRCm39)		probably benign	Het
Zfp688	T	C	7: 127,018,327 (GRCm39)	Y266C	probably damaging	Het
Zfp850	A	T	7: 27,689,658 (GRCm39)	C183*	probably null	Het
Zscan29	T	C	2: 120,999,676 (GRCm39)		probably null	Het

Other mutations in Lrfn5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00492:Lrfn5	APN	12	61,890,912 (GRCm39)	missense	probably benign
IGL02010:Lrfn5	APN	12	61,886,469 (GRCm39)	missense	probably damaging	0.96
IGL03033:Lrfn5	APN	12	61,886,833 (GRCm39)	missense	probably damaging	1.00
IGL03094:Lrfn5	APN	12	61,886,532 (GRCm39)	missense	probably benign	0.00
IGL03207:Lrfn5	APN	12	61,890,112 (GRCm39)	missense	probably damaging	1.00
falstaffian	UTSW	12	61,890,348 (GRCm39)	missense	probably benign	0.21
PIT4696001:Lrfn5	UTSW	12	61,890,343 (GRCm39)	missense	probably damaging	1.00
R0402:Lrfn5	UTSW	12	61,886,803 (GRCm39)	missense	probably benign	0.22
R0738:Lrfn5	UTSW	12	61,887,378 (GRCm39)	nonsense	probably null
R0744:Lrfn5	UTSW	12	61,886,454 (GRCm39)	missense	probably damaging	1.00
R0833:Lrfn5	UTSW	12	61,886,454 (GRCm39)	missense	probably damaging	1.00
R0973:Lrfn5	UTSW	12	61,890,223 (GRCm39)	missense	probably damaging	1.00
R0973:Lrfn5	UTSW	12	61,890,223 (GRCm39)	missense	probably damaging	1.00
R0974:Lrfn5	UTSW	12	61,890,223 (GRCm39)	missense	probably damaging	1.00
R1073:Lrfn5	UTSW	12	61,887,595 (GRCm39)	missense	probably damaging	1.00
R1332:Lrfn5	UTSW	12	61,904,314 (GRCm39)	splice site	probably benign
R1500:Lrfn5	UTSW	12	61,886,527 (GRCm39)	missense	probably damaging	1.00
R2039:Lrfn5	UTSW	12	61,887,109 (GRCm39)	missense	possibly damaging	0.82
R3834:Lrfn5	UTSW	12	61,886,816 (GRCm39)	missense	probably damaging	1.00
R4171:Lrfn5	UTSW	12	61,890,168 (GRCm39)	missense	probably damaging	1.00
R4212:Lrfn5	UTSW	12	61,890,606 (GRCm39)	missense	probably benign
R4394:Lrfn5	UTSW	12	61,890,276 (GRCm39)	missense	probably damaging	1.00
R4578:Lrfn5	UTSW	12	61,890,763 (GRCm39)	missense	probably benign
R4661:Lrfn5	UTSW	12	61,886,433 (GRCm39)	missense	probably damaging	1.00
R4730:Lrfn5	UTSW	12	61,887,505 (GRCm39)	missense	probably benign	0.03
R4955:Lrfn5	UTSW	12	61,886,764 (GRCm39)	missense	probably benign	0.29
R4968:Lrfn5	UTSW	12	61,886,461 (GRCm39)	missense	probably damaging	1.00
R5078:Lrfn5	UTSW	12	61,890,660 (GRCm39)	missense	possibly damaging	0.47
R5165:Lrfn5	UTSW	12	61,886,410 (GRCm39)	missense	possibly damaging	0.89
R5768:Lrfn5	UTSW	12	61,886,509 (GRCm39)	missense	probably benign	0.44
R5892:Lrfn5	UTSW	12	61,890,204 (GRCm39)	missense	probably damaging	1.00
R6133:Lrfn5	UTSW	12	61,890,574 (GRCm39)	missense	probably benign	0.22
R6211:Lrfn5	UTSW	12	61,886,256 (GRCm39)	missense	probably benign	0.00
R6297:Lrfn5	UTSW	12	61,890,348 (GRCm39)	missense	probably benign	0.21
R6341:Lrfn5	UTSW	12	61,890,368 (GRCm39)	nonsense	probably null
R6861:Lrfn5	UTSW	12	61,886,476 (GRCm39)	missense	probably damaging	1.00
R7179:Lrfn5	UTSW	12	61,890,768 (GRCm39)	missense	probably benign
R7392:Lrfn5	UTSW	12	61,887,090 (GRCm39)	missense	probably benign	0.00
R8224:Lrfn5	UTSW	12	61,890,192 (GRCm39)	missense	possibly damaging	0.91
R8261:Lrfn5	UTSW	12	61,886,323 (GRCm39)	missense	probably damaging	1.00
R9528:Lrfn5	UTSW	12	61,886,408 (GRCm39)	missense	probably benign	0.28
R9641:Lrfn5	UTSW	12	61,886,540 (GRCm39)	missense	probably damaging	1.00
R9652:Lrfn5	UTSW	12	61,890,418 (GRCm39)	missense	probably damaging	0.99
R9653:Lrfn5	UTSW	12	61,890,418 (GRCm39)	missense	probably damaging	0.99
Z1177:Lrfn5	UTSW	12	61,886,603 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CATTGGCATAGCTGTGCGAG -3'
(R):5'- TCATCGAAGGCTGTGGAAG -3'

Sequencing Primer
(F):5'- CAGATCTGTCCAAAGCGTTG -3'
(R):5'- CTGTGGAAGAAATTAAAGTCAGCTG -3'

Posted On

2016-04-27