Mutagenetix > Incidental Mutation

Incidental Mutation 'R4993:Dpf3'

385039

Institutional Source

Beutler Lab

Gene Symbol

Dpf3

Ensembl Gene

ENSMUSG00000021221

Gene Name

double PHD fingers 3

Synonyms

cer-d4, CERD4, 2810403B03Rik, Gm18872

MMRRC Submission

042587-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.488) question?

Stock #

R4993 (G1)

Quality Score

167

Status

Not validated

Chromosome

Chromosomal Location

83260519-83534490 bp(-) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

A to T at 83378635 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000136280 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000177801] [ENSMUST00000177959] [ENSMUST00000178756]

AlphaFold

P58269

Predicted Effect

probably null
Transcript: ENSMUST00000133282

SMART Domains

Protein: ENSMUSP00000121199
Gene: ENSMUSG00000021221

Domain	Start	End	E-Value	Type
low complexity region	80	100	N/A	INTRINSIC
low complexity region	106	124	N/A	INTRINSIC
ZnF_C2H2	133	156	1.82e-3	SMART
PDB:2KWO\|A	195	227	2e-14	PDB
Blast:PHD	196	227	5e-14	BLAST
low complexity region	230	246	N/A	INTRINSIC
low complexity region	272	283	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000144237

SMART Domains

Protein: ENSMUSP00000122004
Gene: ENSMUSG00000021221

Domain	Start	End	E-Value	Type
low complexity region	81	101	N/A	INTRINSIC
low complexity region	107	125	N/A	INTRINSIC
ZnF_C2H2	134	157	1.82e-3	SMART
PDB:2KWO\|A	196	228	2e-14	PDB
Blast:PHD	197	228	5e-14	BLAST
low complexity region	231	247	N/A	INTRINSIC
low complexity region	273	284	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000147469

SMART Domains

Protein: ENSMUSP00000122598
Gene: ENSMUSG00000021221

Domain	Start	End	E-Value	Type
low complexity region	81	101	N/A	INTRINSIC
low complexity region	107	125	N/A	INTRINSIC
ZnF_C2H2	134	157	1.82e-3	SMART
PHD	197	253	3.27e-9	SMART
RING	198	252	3.44e0	SMART
PHD	254	300	1.53e-9	SMART
RING	255	299	1.38e0	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000177801

SMART Domains

Protein: ENSMUSP00000136740
Gene: ENSMUSG00000021221

Domain	Start	End	E-Value	Type
Pfam:Requiem_N	8	43	2.9e-13	PFAM
low complexity region	103	123	N/A	INTRINSIC
low complexity region	129	147	N/A	INTRINSIC
ZnF_C2H2	156	179	1.82e-3	SMART
PDB:2KWO\|A	218	250	4e-14	PDB
Blast:PHD	219	250	9e-14	BLAST
low complexity region	253	269	N/A	INTRINSIC
low complexity region	295	306	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000177959

SMART Domains

Protein: ENSMUSP00000137477
Gene: ENSMUSG00000021221

Domain	Start	End	E-Value	Type
Pfam:Requiem_N	12	85	2.6e-40	PFAM
low complexity region	144	164	N/A	INTRINSIC
low complexity region	170	188	N/A	INTRINSIC
ZnF_C2H2	197	220	1.82e-3	SMART
PDB:2KWO\|A	259	291	4e-14	PDB
Blast:PHD	260	291	1e-13	BLAST
low complexity region	294	310	N/A	INTRINSIC
low complexity region	336	347	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000178756

SMART Domains

Protein: ENSMUSP00000136280
Gene: ENSMUSG00000021221

Domain	Start	End	E-Value	Type
Pfam:Requiem_N	13	84	4.8e-40	PFAM
low complexity region	145	165	N/A	INTRINSIC
low complexity region	171	189	N/A	INTRINSIC
ZnF_C2H2	198	221	1.82e-3	SMART
PHD	261	317	3.27e-9	SMART
RING	262	316	3.44e0	SMART
PHD	318	364	1.53e-9	SMART
RING	319	363	1.38e0	SMART

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 94.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the D4 protein family. The encoded protein is a transcription regulator that binds acetylated histones and is a component of the BAF chromatin remodeling complex. Alternate splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2013]
PHENOTYPE: Mice homozygous for a null allele display no detectable phenotype. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 91 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930505A04Rik	C	T	11: 30,376,349 (GRCm39)	V173M	probably damaging	Het
9130008F23Rik	G	T	17: 41,191,052 (GRCm39)	Q126K	probably benign	Het
Abca15	C	A	7: 120,000,941 (GRCm39)	N1492K	probably damaging	Het
Afap1l2	C	T	19: 56,906,472 (GRCm39)	D402N	probably damaging	Het
Akap11	A	G	14: 78,750,408 (GRCm39)	F660L	probably damaging	Het
Bcl3	T	C	7: 19,554,102 (GRCm39)	T89A	probably benign	Het
Bub1b	T	C	2: 118,467,251 (GRCm39)	I858T	possibly damaging	Het
Cdk19	A	G	10: 40,352,214 (GRCm39)	D288G	possibly damaging	Het
Cyp2d34	T	A	15: 82,502,530 (GRCm39)	D202V	probably damaging	Het
Dip2c	T	G	13: 9,625,259 (GRCm39)	Y584*	probably null	Het
Drp2	G	A	X: 133,342,065 (GRCm39)	R567H	probably damaging	Homo
Emid1	G	T	11: 5,081,512 (GRCm39)	Q212K	probably benign	Het
Esm1	C	T	13: 113,349,933 (GRCm39)	Q118*	probably null	Het
Fahd2a	T	G	2: 127,278,284 (GRCm39)	I308L	probably benign	Het
Fanci	T	C	7: 79,085,126 (GRCm39)	*851Q	probably null	Het
Fastkd1	C	A	2: 69,533,084 (GRCm39)	V428F	probably damaging	Het
Fat2	A	T	11: 55,173,918 (GRCm39)	I2265N	probably damaging	Het
Gale	C	A	4: 135,694,171 (GRCm39)	H191Q	probably damaging	Het
Ghsr	T	A	3: 27,426,403 (GRCm39)	V153E	possibly damaging	Het
Gpc6	A	G	14: 117,861,951 (GRCm39)	N289S	possibly damaging	Het
Hoxb6	A	T	11: 96,191,537 (GRCm39)	Y153F	probably damaging	Het
Ints3	T	C	3: 90,322,814 (GRCm39)	T139A	probably benign	Het
Irf2bp2	A	G	8: 127,319,410 (GRCm39)	S256P	probably benign	Het
Klf4	G	T	4: 55,530,640 (GRCm39)	P148Q	probably damaging	Het
Loxl1	T	G	9: 58,219,820 (GRCm39)	H117P	probably damaging	Het
Lpl	A	G	8: 69,348,445 (GRCm39)	K225E	probably benign	Het
Lrba	T	A	3: 86,267,344 (GRCm39)	V1678D	probably damaging	Het
Med1	A	T	11: 98,054,730 (GRCm39)	F398Y	probably damaging	Het
Mfap2	T	C	4: 140,742,889 (GRCm39)	*186Q	probably null	Het
Mfsd3	T	C	15: 76,586,182 (GRCm39)	L105P	probably damaging	Het
Mlxip	T	G	5: 123,533,357 (GRCm39)	I122S	probably damaging	Het
Mmrn2	A	T	14: 34,118,355 (GRCm39)	Y107F	probably damaging	Het
Mtg1	G	T	7: 139,720,196 (GRCm39)	D88Y	probably null	Het
Mutyh	T	A	4: 116,675,132 (GRCm39)	S426R	probably benign	Het
Myo16	C	T	8: 10,526,094 (GRCm39)	T878I	probably damaging	Het
Myo9a	T	A	9: 59,768,755 (GRCm39)	Y912*	probably null	Het
Ncor1	A	C	11: 62,234,167 (GRCm39)	I669R	probably damaging	Het
Ndufs1	T	C	1: 63,202,935 (GRCm39)	I210V	probably benign	Het
Nek9	A	G	12: 85,357,194 (GRCm39)	C657R	probably damaging	Het
Noct	C	T	3: 51,157,442 (GRCm39)	T260I	probably damaging	Het
Nr1h4	A	T	10: 89,334,042 (GRCm39)	M102K	probably benign	Het
Obscn	G	A	11: 59,015,587 (GRCm39)	R1054C	possibly damaging	Het
Or10ag58	T	A	2: 87,265,496 (GRCm39)	F222I	probably benign	Het
Or1j20	C	A	2: 36,760,000 (GRCm39)	Q141K	probably benign	Het
Or2a57	A	G	6: 43,213,390 (GRCm39)	M283V	possibly damaging	Het
Or51ah3	T	A	7: 103,210,524 (GRCm39)	I280N	possibly damaging	Het
Or52z14	A	T	7: 103,252,863 (GRCm39)	M1L	probably benign	Het
Or5p75-ps1	G	A	7: 108,107,450 (GRCm39)	M62I	probably damaging	Het
Otol1	C	A	3: 69,926,211 (GRCm39)	Q129K	probably benign	Het
Otx1	A	T	11: 21,948,532 (GRCm39)		probably null	Het
Pcdhac2	C	A	18: 37,279,304 (GRCm39)	N761K	probably damaging	Het
Pde1c	A	T	6: 56,127,609 (GRCm39)	M452K	probably damaging	Het
Phkg2	T	C	7: 127,173,113 (GRCm39)	Y24H	probably damaging	Het
Pigr	G	A	1: 130,769,554 (GRCm39)	D122N	probably benign	Het
Prg4	C	T	1: 150,336,432 (GRCm39)	C97Y	probably damaging	Het
Ptdss1	T	C	13: 67,093,352 (GRCm39)	V64A	probably benign	Het
Ralgapa2	T	C	2: 146,289,231 (GRCm39)	K324E	probably damaging	Het
Rfx5	G	A	3: 94,863,126 (GRCm39)	V73I	probably benign	Het
Riiad1	T	C	3: 94,380,170 (GRCm39)	T42A	probably benign	Het
Rims2	T	C	15: 39,317,841 (GRCm39)	V640A	possibly damaging	Het
Rnpep	G	T	1: 135,190,770 (GRCm39)	S592Y	possibly damaging	Het
Scap	T	C	9: 110,207,458 (GRCm39)	L431P	probably damaging	Het
Siglec1	T	A	2: 130,915,281 (GRCm39)	I1437F	possibly damaging	Het
Skic3	T	A	13: 76,331,055 (GRCm39)	M1495K	probably damaging	Het
Skint1	T	C	4: 111,885,530 (GRCm39)		probably null	Het
Slc44a1	A	G	4: 53,543,644 (GRCm39)	E396G	probably damaging	Het
Slc4a2	T	C	5: 24,639,867 (GRCm39)	F521S	probably damaging	Het
Smarcc1	T	A	9: 110,004,129 (GRCm39)	S394R	probably damaging	Het
Socs1	A	G	16: 10,602,549 (GRCm39)	S63P	probably benign	Het
Spopfm2	C	T	3: 94,083,623 (GRCm39)	G63R	probably damaging	Het
Sun1	T	G	5: 139,211,088 (GRCm39)	S20A	possibly damaging	Het
Tac4	A	T	11: 95,156,068 (GRCm39)	K50*	probably null	Het
Tasor	T	A	14: 27,151,071 (GRCm39)	W16R	possibly damaging	Het
Tcaf2	A	G	6: 42,619,574 (GRCm39)	I151T	probably damaging	Het
Tcf4	T	C	18: 69,814,840 (GRCm39)	V587A	probably damaging	Het
Ttn	T	A	2: 76,571,253 (GRCm39)	K24801*	probably null	Het
Tuba3b	G	T	6: 145,566,999 (GRCm39)	M413I	possibly damaging	Het
Ufl1	C	T	4: 25,267,832 (GRCm39)	A280T	possibly damaging	Het
Ugt2b5	T	A	5: 87,287,532 (GRCm39)	I212L	probably benign	Het
Umodl1	A	G	17: 31,205,459 (GRCm39)	T685A	probably benign	Het
Uqcrc1	T	A	9: 108,773,878 (GRCm39)	V183D	probably damaging	Het
Ush2a	A	G	1: 188,642,917 (GRCm39)	N4093S	probably benign	Het
Vmn1r167	C	T	7: 23,204,653 (GRCm39)	S121N	probably damaging	Het
Vmn1r47	A	G	6: 89,999,740 (GRCm39)	S291G	possibly damaging	Het
Vmn2r108	A	G	17: 20,701,449 (GRCm39)	V17A	probably benign	Het
Vmn2r58	T	A	7: 41,487,176 (GRCm39)	H573L	probably benign	Het
Xirp1	C	T	9: 119,847,858 (GRCm39)	V342I	probably damaging	Het
Zfp462	A	G	4: 55,051,204 (GRCm39)	M2226V	possibly damaging	Het
Zfp467	G	A	6: 48,415,963 (GRCm39)	H230Y	probably damaging	Het
Zfp595	T	A	13: 67,464,465 (GRCm39)	K599N	probably damaging	Het
Zfp819	C	A	7: 43,266,720 (GRCm39)	T401K	probably benign	Het

Other mutations in Dpf3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01452:Dpf3	APN	12	83,316,263 (GRCm39)	missense	probably benign
IGL01719:Dpf3	APN	12	83,341,207 (GRCm39)	missense	probably damaging	0.99
IGL01950:Dpf3	APN	12	83,371,723 (GRCm39)	missense	probably benign	0.00
R0457:Dpf3	UTSW	12	83,319,179 (GRCm39)	missense	probably damaging	0.96
R1104:Dpf3	UTSW	12	83,378,761 (GRCm39)	missense	probably benign	0.30
R1565:Dpf3	UTSW	12	83,417,391 (GRCm39)	missense	probably damaging	0.98
R1969:Dpf3	UTSW	12	83,371,809 (GRCm39)	critical splice acceptor site	probably null
R1970:Dpf3	UTSW	12	83,371,809 (GRCm39)	critical splice acceptor site	probably null
R1971:Dpf3	UTSW	12	83,371,809 (GRCm39)	critical splice acceptor site	probably null
R2344:Dpf3	UTSW	12	83,397,594 (GRCm39)	missense	probably damaging	1.00
R3732:Dpf3	UTSW	12	83,316,281 (GRCm39)	missense	possibly damaging	0.90
R4828:Dpf3	UTSW	12	83,341,273 (GRCm39)	missense	possibly damaging	0.89
R4936:Dpf3	UTSW	12	83,378,740 (GRCm39)	missense	probably damaging	1.00
R4970:Dpf3	UTSW	12	83,417,385 (GRCm39)	nonsense	probably null
R5112:Dpf3	UTSW	12	83,417,385 (GRCm39)	nonsense	probably null
R5182:Dpf3	UTSW	12	83,417,370 (GRCm39)	missense	probably damaging	0.99
R5638:Dpf3	UTSW	12	83,371,714 (GRCm39)	missense	probably damaging	1.00
R5657:Dpf3	UTSW	12	83,371,785 (GRCm39)	missense	probably damaging	0.98
R7472:Dpf3	UTSW	12	83,319,159 (GRCm39)	missense	probably benign	0.37
R7481:Dpf3	UTSW	12	83,378,701 (GRCm39)	missense	probably damaging	1.00
R8350:Dpf3	UTSW	12	83,397,625 (GRCm39)	missense	probably damaging	1.00
R9340:Dpf3	UTSW	12	83,534,449 (GRCm39)	critical splice donor site	probably null
R9634:Dpf3	UTSW	12	83,378,635 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- TCTGAGTACAGATACCAGGAAAC -3'
(R):5'- AACTCTGGACTCTTCATCCTGG -3'

Sequencing Primer
(F):5'- TACAGATACCAGGAAACCAGGG -3'
(R):5'- ATCCTGGTTCCCAAGGATTAC -3'

Posted On

2016-05-10