Mutagenetix > Incidental Mutation

Incidental Mutation 'R4995:Crot'

385160

Institutional Source

Beutler Lab

Gene Symbol

Crot

Ensembl Gene

ENSMUSG00000003623

Gene Name

carnitine O-octanoyltransferase

Synonyms

1200003H03Rik

MMRRC Submission

042589-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.103) question?

Stock #

R4995 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

9016033-9047324 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 9024000 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Glutamic Acid at position 372 (V372E)

Ref Sequence

ENSEMBL: ENSMUSP00000003720 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000003720]

AlphaFold

Q9DC50

PDB Structure

Crystal Structure of Mouse Carnitine Octanoyltransferase [X-RAY DIFFRACTION]
Crystal structure of mouse carnitine octanoyltransferase in complex with octanoylcarnitine [X-RAY DIFFRACTION]
C323M mutant structure of mouse carnitine octanoyltransferase [X-RAY DIFFRACTION]
M335V mutant structure of mouse carnitine octanoyltransferase [X-RAY DIFFRACTION]

Predicted Effect

probably damaging
Transcript: ENSMUST00000003720
AA Change: V372E

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000003720
Gene: ENSMUSG00000003623
AA Change: V372E

Domain	Start	End	E-Value	Type
Pfam:Carn_acyltransf	20	604	2.3e-167	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000120584

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146115

Meta Mutation Damage Score

0.6139

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.7%
20x: 93.6%

Validation Efficiency

99% (86/87)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the carnitine/choline acetyltransferase family. The encoded protein converts 4,8-dimethylnonanoyl-CoA to its corresponding carnitine ester. This transesterification occurs in the peroxisome and is necessary for transport of medium- and long- chain acyl-CoA molecules out of the peroxisome to the cytosol and mitochondria. The protein thus plays a role in lipid metabolism and fatty acid beta-oxidation. Alternatively spliced transcript variants have been described.[provided by RefSeq, Jan 2009]

Allele List at MGI

Other mutations in this stock

Total: 79 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921504E06Rik	G	A	2: 19,498,995 (GRCm39)	Q333*	probably null	Het
4930505A04Rik	C	T	11: 30,376,349 (GRCm39)	V173M	probably damaging	Het
Acvrl1	G	A	15: 101,033,741 (GRCm39)	R141H	probably benign	Het
Adprm	A	G	11: 66,932,436 (GRCm39)	F158L	possibly damaging	Het
Aldoart2	C	T	12: 55,613,038 (GRCm39)	T321M	probably benign	Het
Ap3m2	A	G	8: 23,293,792 (GRCm39)	V86A	probably benign	Het
Arhgef19	T	A	4: 140,974,826 (GRCm39)		probably null	Het
Bcl2l12	T	G	7: 44,643,615 (GRCm39)		probably null	Het
Bptf	T	C	11: 106,945,391 (GRCm39)	Q2501R	probably damaging	Het
C230029F24Rik	A	T	1: 49,377,295 (GRCm39)		noncoding transcript	Het
C7	C	T	15: 5,079,074 (GRCm39)	G78D	probably damaging	Het
Caly	T	C	7: 139,650,538 (GRCm39)	T135A	probably benign	Het
Cbl	A	G	9: 44,065,108 (GRCm39)	M740T	possibly damaging	Het
Cbx4	A	G	11: 118,972,037 (GRCm39)	V446A	probably benign	Het
Celsr1	C	A	15: 85,822,112 (GRCm39)	R1735L	probably damaging	Het
Cep250	A	G	2: 155,830,236 (GRCm39)	D135G	probably damaging	Het
Cgn	T	C	3: 94,687,246 (GRCm39)	T19A	probably damaging	Het
Chic2	A	T	5: 75,204,865 (GRCm39)	V32D	probably damaging	Het
Cntln	A	G	4: 84,968,120 (GRCm39)	K780E	probably benign	Het
Col8a2	A	T	4: 126,204,581 (GRCm39)	D197V	probably damaging	Het
Cyb561d2	C	T	9: 107,418,747 (GRCm39)	V26M	probably damaging	Het
Ddx5	G	A	11: 106,676,062 (GRCm39)	T237I	probably damaging	Het
Dmxl2	G	T	9: 54,408,725 (GRCm39)		probably benign	Het
Dock8	T	A	19: 25,135,747 (GRCm39)	S1188R	probably benign	Het
Ehbp1	T	A	11: 22,051,073 (GRCm39)	H493L	probably damaging	Het
Eif5b	T	A	1: 38,090,792 (GRCm39)	*1217K	probably null	Het
Eprs1	A	G	1: 185,142,336 (GRCm39)		probably benign	Het
Etfdh	T	C	3: 79,513,095 (GRCm39)	D376G	probably benign	Het
Fam186a	T	C	15: 99,842,980 (GRCm39)	Q1088R	probably benign	Het
Fbxw16	G	T	9: 109,270,318 (GRCm39)	T141N	probably damaging	Het
Fgf11	G	A	11: 69,689,585 (GRCm39)	H138Y	probably damaging	Het
Htra3	T	C	5: 35,828,418 (GRCm39)	E154G	probably damaging	Het
Hydin	T	A	8: 111,296,274 (GRCm39)	V3601D	probably damaging	Het
Jup	G	T	11: 100,270,367 (GRCm39)	S380*	probably null	Het
Klrg1	T	A	6: 122,255,234 (GRCm39)	D66V	probably benign	Het
Llgl1	C	T	11: 60,600,550 (GRCm39)	A633V	probably benign	Het
Lmln	T	A	16: 32,894,467 (GRCm39)	Y203*	probably null	Het
Lrrc58	T	G	16: 37,697,418 (GRCm39)	C165G	probably benign	Het
Lss	T	C	10: 76,383,371 (GRCm39)	V557A	probably benign	Het
Mast4	T	C	13: 103,042,262 (GRCm39)		probably benign	Het
Med13l	C	A	5: 118,869,014 (GRCm39)	P754Q	possibly damaging	Het
Mga	C	T	2: 119,763,063 (GRCm39)	R1240*	probably null	Het
Mgat5b	T	A	11: 116,865,025 (GRCm39)		probably null	Het
Mtor	A	G	4: 148,610,209 (GRCm39)	D1572G	probably damaging	Het
Muc4	T	A	16: 32,754,214 (GRCm38)	S1363T	probably benign	Het
Muc4	T	A	16: 32,575,332 (GRCm39)	S1306T	probably benign	Het
Myo18b	A	G	5: 112,908,258 (GRCm39)	V2005A	probably damaging	Het
Myo1e	G	A	9: 70,260,554 (GRCm39)	D571N	probably benign	Het
Mypn	T	C	10: 62,955,747 (GRCm39)		probably null	Het
Ndufb10	T	C	17: 24,941,731 (GRCm39)		probably null	Het
Nelfb	G	T	2: 25,096,208 (GRCm39)	D300E	probably benign	Het
Nicol1	G	A	5: 34,142,270 (GRCm39)	R79H	probably damaging	Het
Odad2	G	A	18: 7,223,663 (GRCm39)	T460M	probably damaging	Het
Or2y1d	T	A	11: 49,321,482 (GRCm39)	Y60N	probably damaging	Het
Or4e5	A	T	14: 52,727,988 (GRCm39)	C61*	probably null	Het
Or52n2c	T	A	7: 104,574,942 (GRCm39)	T10S	probably benign	Het
Or52z15	T	A	7: 103,332,574 (GRCm39)	D206E	probably damaging	Het
Pcdha11	C	T	18: 37,144,080 (GRCm39)	T57M	probably benign	Het
Pkp1	A	T	1: 135,808,593 (GRCm39)	I458N	possibly damaging	Het
Prr12	T	A	7: 44,700,653 (GRCm39)		probably benign	Het
Prrc2c	A	T	1: 162,532,879 (GRCm39)		probably benign	Het
Psd4	T	C	2: 24,287,259 (GRCm39)	F397S	probably benign	Het
Pygm	T	C	19: 6,448,169 (GRCm39)	I737T	probably damaging	Het
Rfx1	T	A	8: 84,806,743 (GRCm39)		probably null	Het
Rsl1	A	G	13: 67,330,313 (GRCm39)	T254A	possibly damaging	Het
Sh3rf3	A	G	10: 58,922,646 (GRCm39)	Q574R	probably benign	Het
Spire1	T	C	18: 67,685,849 (GRCm39)		probably null	Het
St6galnac4	G	A	2: 32,484,075 (GRCm39)	G91D	probably damaging	Het
Sytl2	T	C	7: 90,031,465 (GRCm39)		probably benign	Het
Tbpl2	T	A	2: 23,983,872 (GRCm39)	K188N	possibly damaging	Het
Tenm3	A	T	8: 48,682,172 (GRCm39)	M2486K	possibly damaging	Het
Tgoln1	A	C	6: 72,593,123 (GRCm39)	V119G	possibly damaging	Het
Tpgs1	A	T	10: 79,505,325 (GRCm39)	N28Y	probably benign	Het
U2surp	A	C	9: 95,344,847 (GRCm39)		probably benign	Het
Vmn2r103	A	G	17: 19,993,773 (GRCm39)	H50R	probably benign	Het
Vmn2r19	A	G	6: 123,306,869 (GRCm39)	N459S	probably benign	Het
Vmn2r72	T	C	7: 85,387,693 (GRCm39)	S624G	probably damaging	Het
Vps13c	A	G	9: 67,826,603 (GRCm39)	T1415A	probably benign	Het
Vwa5b1	G	A	4: 138,336,154 (GRCm39)	P147S	probably damaging	Het

Other mutations in Crot

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00756:Crot	APN	5	9,026,072 (GRCm39)	missense	probably damaging	1.00
IGL01013:Crot	APN	5	9,043,575 (GRCm39)	missense	probably benign	0.06
IGL01085:Crot	APN	5	9,023,955 (GRCm39)	missense	probably damaging	1.00
IGL02017:Crot	APN	5	9,020,046 (GRCm39)	splice site	probably benign
IGL02306:Crot	APN	5	9,018,701 (GRCm39)	missense	possibly damaging	0.94
IGL02612:Crot	APN	5	9,019,945 (GRCm39)	missense	probably damaging	1.00
IGL02884:Crot	APN	5	9,028,197 (GRCm39)	critical splice donor site	probably null
IGL03091:Crot	APN	5	9,016,897 (GRCm39)	missense	probably benign
IGL03356:Crot	APN	5	9,038,295 (GRCm39)	splice site	probably benign
ouray	UTSW	5	9,043,504 (GRCm39)	critical splice donor site	probably null
R0383:Crot	UTSW	5	9,018,734 (GRCm39)	missense	probably damaging	1.00
R0396:Crot	UTSW	5	9,019,959 (GRCm39)	missense	probably damaging	1.00
R0502:Crot	UTSW	5	9,026,075 (GRCm39)	missense	possibly damaging	0.66
R0503:Crot	UTSW	5	9,026,075 (GRCm39)	missense	possibly damaging	0.66
R0676:Crot	UTSW	5	9,043,622 (GRCm39)	utr 5 prime	probably benign
R1079:Crot	UTSW	5	9,043,504 (GRCm39)	critical splice donor site	probably null
R1472:Crot	UTSW	5	9,016,941 (GRCm39)	missense	probably damaging	1.00
R1595:Crot	UTSW	5	9,024,186 (GRCm39)	missense	probably benign	0.00
R1757:Crot	UTSW	5	9,037,828 (GRCm39)	missense	probably damaging	1.00
R1828:Crot	UTSW	5	9,019,080 (GRCm39)	missense	probably benign	0.01
R1846:Crot	UTSW	5	9,038,248 (GRCm39)	missense	probably benign	0.36
R2142:Crot	UTSW	5	9,037,780 (GRCm39)	missense	possibly damaging	0.94
R3973:Crot	UTSW	5	9,027,541 (GRCm39)	missense	probably benign
R3974:Crot	UTSW	5	9,027,541 (GRCm39)	missense	probably benign
R3975:Crot	UTSW	5	9,027,541 (GRCm39)	missense	probably benign
R4445:Crot	UTSW	5	9,023,643 (GRCm39)	missense	probably damaging	1.00
R4446:Crot	UTSW	5	9,023,643 (GRCm39)	missense	probably damaging	1.00
R5084:Crot	UTSW	5	9,019,994 (GRCm39)	missense	probably damaging	1.00
R5464:Crot	UTSW	5	9,033,690 (GRCm39)	splice site	probably null
R5673:Crot	UTSW	5	9,038,131 (GRCm39)	missense	probably benign	0.00
R5814:Crot	UTSW	5	9,023,996 (GRCm39)	missense	probably damaging	0.99
R5935:Crot	UTSW	5	9,024,192 (GRCm39)	missense	probably benign
R5951:Crot	UTSW	5	9,019,120 (GRCm39)	nonsense	probably null
R6862:Crot	UTSW	5	9,039,641 (GRCm39)	missense	probably damaging	0.99
R6885:Crot	UTSW	5	9,023,635 (GRCm39)	missense	probably benign	0.00
R6983:Crot	UTSW	5	9,028,280 (GRCm39)	missense	probably benign	0.06
R7150:Crot	UTSW	5	9,037,878 (GRCm39)	missense	probably damaging	0.99
R7228:Crot	UTSW	5	9,026,051 (GRCm39)	missense	probably damaging	1.00
R7361:Crot	UTSW	5	9,027,534 (GRCm39)	missense	probably damaging	1.00
R7662:Crot	UTSW	5	9,019,072 (GRCm39)	missense	probably damaging	1.00
R7747:Crot	UTSW	5	9,018,869 (GRCm39)	critical splice donor site	probably null
R8002:Crot	UTSW	5	9,043,599 (GRCm39)	missense	probably benign	0.36
R8105:Crot	UTSW	5	9,027,505 (GRCm39)	missense	probably damaging	0.99
R8233:Crot	UTSW	5	9,026,027 (GRCm39)	missense	possibly damaging	0.77
R8474:Crot	UTSW	5	9,043,518 (GRCm39)	missense	probably damaging	1.00
R8519:Crot	UTSW	5	9,023,629 (GRCm39)	missense	probably benign
R8734:Crot	UTSW	5	9,028,208 (GRCm39)	missense	probably benign	0.02
R9528:Crot	UTSW	5	9,043,575 (GRCm39)	missense	possibly damaging	0.46
R9649:Crot	UTSW	5	9,024,170 (GRCm39)	missense	probably benign	0.03

Predicted Primers

PCR Primer
(F):5'- TCTGCAGATCTGACGCCTAC -3'
(R):5'- GGTCATGGTGAACATTGCAC -3'

Sequencing Primer
(F):5'- TGAGAAATCATGGAAAAGCAAACTC -3'
(R):5'- GAGCAAGTCGTCATCCTT -3'

Posted On

2016-05-10